LOCUS       NM_001135686             897 bp    mRNA    linear   PRI 14-MAY-2013
DEFINITION  Homo sapiens T cell-interacting, activating receptor on myeloid
            cells 1 (TARM1), mRNA.
ACCESSION   NM_001135686 XM_001127643 XM_001718727 XM_497642
VERSION     NM_001135686.1  GI:208879428
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 897)
  AUTHORS   Kohn,L., Bowne,S.J., S Sullivan,L., Daiger,S.P., Burstedt,M.S.,
            Kadzhaev,K., Sandgren,O. and Golovleva,I.
  TITLE     Breakpoint characterization of a novel approximately 59 kb genomic
            deletion on 19q13.42 in autosomal-dominant retinitis pigmentosa
            with incomplete penetrance
  JOURNAL   Eur. J. Hum. Genet. 17 (5), 651-655 (2009)
   PUBMED   19050727
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from DQ479398.1.
            On or before Oct 8, 2008 this sequence version replaced
            gi:169214465, gi:169214024, gi:169213424.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DQ479398.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..897
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="19"
                     /map="19q13.42"
     gene            1..897
                     /gene="TARM1"
                     /gene_synonym="OLT-2"
                     /note="T cell-interacting, activating receptor on myeloid
                     cells 1"
                     /db_xref="GeneID:441864"
                     /db_xref="HGNC:37250"
     exon            1..59
                     /gene="TARM1"
                     /gene_synonym="OLT-2"
                     /inference="alignment:Splign:1.39.8"
     misc_feature    14..16
                     /gene="TARM1"
                     /gene_synonym="OLT-2"
                     /note="upstream in-frame stop codon"
     CDS             26..841
                     /gene="TARM1"
                     /gene_synonym="OLT-2"
                     /note="T-cell-interacting, activating receptor on myeloid
                     cells protein 1; OSCAR-like transcript-2 protein"
                     /codon_start=1
                     /product="T-cell-interacting, activating receptor on
                     myeloid cells protein 1 precursor"
                     /protein_id="NP_001129158.1"
                     /db_xref="GI:208879429"
                     /db_xref="CCDS:CCDS46173.1"
                     /db_xref="GeneID:441864"
                     /db_xref="HGNC:37250"
                     /translation="

MIPKLLSLLCFRLCVGQGDTRGDGSLPKPSLSAWPSSVVPANSNVTLRCWTPARGVSFVLRKGGIILESPKPLDSTEGAAEFHLNNLKVRNAGEYTCEYYRKASPHILSQRSDVLLLLVTGHLSKPFLRTYQRGTVTAGGRVTLQCQKRDQLFVPIMFALLKAGTPSPIQLQSPAGKEIDFSLVDVTAGDAGNYSCMYYQTKSPFWASEPSDQLEILVTVPPGTTSSNYSLGNFVRLGLAAVIVVIMGAFLVEAWYSRNVSPGESEAFKPE

"
     sig_peptide     26..73
                     /gene="TARM1"
                     /gene_synonym="OLT-2"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     mat_peptide     74..838
                     /gene="TARM1"
                     /gene_synonym="OLT-2"
                     /product="T-cell-interacting, activating receptor on
                     myeloid cells protein 1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (B6A8C7.1)"
     misc_feature    104..385
                     /gene="TARM1"
                     /gene_synonym="OLT-2"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:213125"
     misc_feature    395..682
                     /gene="TARM1"
                     /gene_synonym="OLT-2"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:213125"
     misc_feature    734..796
                     /gene="TARM1"
                     /gene_synonym="OLT-2"
                     /inference="non-experimental evidence, no additional
                     details recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (B6A8C7.1);
                     transmembrane region"
     exon            60..95
                     /gene="TARM1"
                     /gene_synonym="OLT-2"
                     /inference="alignment:Splign:1.39.8"
     exon            96..386
                     /gene="TARM1"
                     /gene_synonym="OLT-2"
                     /inference="alignment:Splign:1.39.8"
     variation       266
                     /gene="TARM1"
                     /gene_synonym="OLT-2"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2361558"
     exon            387..683
                     /gene="TARM1"
                     /gene_synonym="OLT-2"
                     /inference="alignment:Splign:1.39.8"
     STS             412..673
                     /gene="TARM1"
                     /gene_synonym="OLT-2"
                     /standard_name="REN91435"
                     /db_xref="UniSTS:416233"
     exon            684..897
                     /gene="TARM1"
                     /gene_synonym="OLT-2"
                     /inference="alignment:Splign:1.39.8"
ORIGIN      

actctgggagggctaaggagccatcatgatccctaagctgctttccctcctctgtttcagactgtgcgtgggccaaggagacacaaggggagatgggtcactgcccaagccgtccctcagtgcctggcccagctcggtggtccctgccaacagcaatgtgacgctgcgatgttggactcctgccagaggtgtgagctttgttctcaggaagggaggaattattctggagtccccgaagccccttgattctacagagggcgcggccgaatttcacctcaataatctaaaagtcagaaatgctggagagtacacctgtgaatactacagaaaagcatccccccacatcctttcacagcgcagtgacgtccttctactgttggtgacaggacatttatctaaacctttcctccgaacctaccaaaggggtacagtgaccgcaggtggaagggtgactctgcagtgccagaagcgagaccaattgtttgtgcctatcatgttcgctctactgaaggcagggacgccatcacccatccagctgcagagtccagcggggaaggagatagacttctctctggtggacgtgacagccggcgatgctgggaactacagctgcatgtactaccagacaaagtctcccttctgggcctcagaacccagtgatcagcttgagatattggtgacagttcccccaggtaccacatcgagcaactactccctgggtaacttcgtacgactgggtctggctgccgtaattgtggttatcatgggagctttcctggtggaggcctggtacagccggaatgtgtctccaggtgaatcagaggccttcaaaccagagtgactccatcttgaaccggggctgggtaaactgaggctgcaacctgctggactgcattc

//

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:441864 -> Cellular component: GO:0016021 [integral to membrane] evidence: IEA