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2024-04-19 11:52:41, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001135586 5083 bp mRNA linear PRI 17-APR-2013
DEFINITION Homo sapiens chromosome 5 open reading frame 24 (C5orf24),
transcript variant 1, mRNA.
ACCESSION NM_001135586
VERSION NM_001135586.1 GI:207450710
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5083)
AUTHORS Lamesch,P., Li,N., Milstein,S., Fan,C., Hao,T., Szabo,G., Hu,Z.,
Venkatesan,K., Bethel,G., Martin,P., Rogers,J., Lawlor,S.,
McLaren,S., Dricot,A., Borick,H., Cusick,M.E., Vandenhaute,J.,
Dunham,I., Hill,D.E. and Vidal,M.
TITLE hORFeome v3.1: a resource of human open reading frames representing
over 10,000 human genes
JOURNAL Genomics 89 (3), 307-315 (2007)
PUBMED 17207965
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
DA760705.1 and AC006077.1.
Transcript Variant: This variant (1) represents the longer
transcript. Variants 1 and 2 both encode the same protein.
Sequence Note: This RefSeq record was created from transcript and
genomic sequence data because no single transcript was available
for the full length of the gene. The extent of this transcript is
supported by transcript alignments.
##Evidence-Data-START##
Transcript exon combination :: DA760705.1, AK094881.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
ERS025081, ERS025082 [ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-153 DA760705.1 1-153
154-172 DA760705.1 155-173
173-570 DA760705.1 175-572
571-5083 AC006077.1 22385-26897
FEATURES Location/Qualifiers
source 1..5083
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="5"
/map="5q31.1"
gene 1..5083
/gene="C5orf24"
/note="chromosome 5 open reading frame 24"
/db_xref="GeneID:134553"
/db_xref="HGNC:26746"
exon 1..245
/gene="C5orf24"
/inference="alignment:Splign:1.39.8"
variation 7
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:367568912"
variation 118
/gene="C5orf24"
/replace="c"
/replace="g"
/db_xref="dbSNP:184599692"
misc_feature 210..212
/gene="C5orf24"
/note="upstream in-frame stop codon"
variation 234
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:150880564"
exon 246..5083
/gene="C5orf24"
/inference="alignment:Splign:1.39.8"
CDS 249..815
/gene="C5orf24"
/codon_start=1
/product="UPF0461 protein C5orf24"
/protein_id="NP_001129058.1"
/db_xref="GI:207450711"
/db_xref="CCDS:CCDS4179.1"
/db_xref="GeneID:134553"
/db_xref="HGNC:26746"
/translation="
MMHPVASSNPAFCGPGKPSCLNEDAMRAADQFDIYSSQQSKYSHTVNHKPMVCQRQDPLNETHLQTTSGRSIEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPPGSIKALSRLADLGYGCGTAAFPYPMMHGRAVHGVEETSSEVKPPNE
"
misc_feature 357..359
/gene="C5orf24"
/experiment="experimental evidence, no additional details
recorded"
/note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
(Q7Z6I8.1); phosphorylation site"
variation 256
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:182827108"
variation 324
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:144977700"
variation 371
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:368441862"
variation 373
/gene="C5orf24"
/replace="a"
/replace="c"
/db_xref="dbSNP:76797142"
variation 375
/gene="C5orf24"
/replace="a"
/replace="t"
/db_xref="dbSNP:372418986"
variation 385
/gene="C5orf24"
/replace="g"
/replace="t"
/db_xref="dbSNP:373302777"
variation 390
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:189210384"
variation 437
/gene="C5orf24"
/replace="c"
/replace="g"
/db_xref="dbSNP:376967674"
variation 455
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:138898204"
variation 507
/gene="C5orf24"
/replace="a"
/replace="t"
/db_xref="dbSNP:142019018"
variation 530
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:146323904"
prim_transcript join(<571..593,1093..1300)
/gene="C5orf24"
/standard_name="za86e05"
/note="99% entity EST dbEST:N76126"
prim_transcript <571..786
/gene="C5orf24"
/standard_name="vr48g07"
/note="91% entity mouse EST dbEST:AA794927"
variation 576
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:368128995"
variation 624
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:148188988"
variation 650
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:141164760"
variation 665
/gene="C5orf24"
/replace="c"
/replace="g"
/db_xref="dbSNP:193092391"
variation 678
/gene="C5orf24"
/replace="a"
/replace="c"
/db_xref="dbSNP:375925184"
variation 696
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:199887798"
variation 747
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:369059533"
variation 765
/gene="C5orf24"
/replace="g"
/replace="t"
/db_xref="dbSNP:150693644"
variation 768
/gene="C5orf24"
/replace="a"
/replace="c"
/db_xref="dbSNP:139980444"
variation 772
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:150797739"
variation 779
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:145067433"
variation 800
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:75692562"
variation 808
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:140427240"
variation 857
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:368013222"
variation 862
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:371433307"
variation 868
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:139222825"
variation 870
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:143589903"
variation 878
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:184484229"
variation 1094
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:147194284"
variation 1112
/gene="C5orf24"
/replace="a"
/replace="c"
/db_xref="dbSNP:187459204"
variation 1140
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:191834107"
variation 1275..1280
/gene="C5orf24"
/replace=""
/replace="gtaaca"
/db_xref="dbSNP:368150166"
variation 1275
/gene="C5orf24"
/replace="g"
/replace="t"
/db_xref="dbSNP:202016249"
variation 1351
/gene="C5orf24"
/replace="g"
/replace="t"
/db_xref="dbSNP:184054742"
variation 1513
/gene="C5orf24"
/replace="a"
/replace="c"
/db_xref="dbSNP:376746765"
variation 1567
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:113314814"
variation 1636
/gene="C5orf24"
/replace="g"
/replace="t"
/db_xref="dbSNP:188596864"
variation 1926
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:112436387"
variation 1989..2000
/gene="C5orf24"
/replace=""
/replace="aaataaataaat"
/db_xref="dbSNP:144902250"
variation 1989..1992
/gene="C5orf24"
/replace=""
/replace="aaat"
/db_xref="dbSNP:202226698"
variation 2000..2003
/gene="C5orf24"
/replace=""
/replace="taaa"
/db_xref="dbSNP:10552008"
variation 2022
/gene="C5orf24"
/replace=""
/replace="ataa"
/db_xref="dbSNP:72322633"
variation 2028
/gene="C5orf24"
/replace=""
/replace="taaa"
/db_xref="dbSNP:61626616"
variation 2031
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:181710725"
variation 2094
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:185140929"
variation 2128
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:112492801"
variation 2142
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:190830022"
variation 2191
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:181935929"
variation 2319
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:144737830"
variation 2346
/gene="C5orf24"
/replace="g"
/replace="t"
/db_xref="dbSNP:186132693"
variation 2701
/gene="C5orf24"
/replace="g"
/replace="t"
/db_xref="dbSNP:78987868"
misc_feature 2705..2779
/gene="C5orf24"
/note="GRAIL 2 excellent exon, frame 2"
variation 2720
/gene="C5orf24"
/replace="c"
/replace="g"
/db_xref="dbSNP:373114001"
variation 2797
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:377231492"
variation 2822
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:115396590"
variation 2845
/gene="C5orf24"
/replace="a"
/replace="t"
/db_xref="dbSNP:145780106"
variation 2981
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:114887018"
prim_transcript 3077..3664
/gene="C5orf24"
/standard_name="af70g12"
/note="99% entity EST dbEST:AA625228"
variation 3132
/gene="C5orf24"
/replace="a"
/replace="t"
/db_xref="dbSNP:148502660"
variation 3142
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:116661206"
variation 3206
/gene="C5orf24"
/replace="a"
/replace="c"
/db_xref="dbSNP:189595352"
variation 3368
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:180750598"
variation 3396
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:367598207"
variation 3470
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:80346634"
variation 3479
/gene="C5orf24"
/replace="a"
/replace="t"
/db_xref="dbSNP:118050206"
variation 3566
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:374934904"
variation 3620
/gene="C5orf24"
/replace="a"
/replace="t"
/db_xref="dbSNP:185600585"
variation 3753
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:190060727"
variation 4010
/gene="C5orf24"
/replace="g"
/replace="t"
/db_xref="dbSNP:113157441"
variation 4107
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:151105359"
STS 4142..4311
/gene="C5orf24"
/standard_name="SHGC-64770"
/db_xref="UniSTS:184206"
variation 4210
/gene="C5orf24"
/replace="a"
/replace="t"
/db_xref="dbSNP:15236"
variation 4216
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:112372759"
variation 4271
/gene="C5orf24"
/replace="a"
/replace="c"
/db_xref="dbSNP:17695346"
variation 4323
/gene="C5orf24"
/replace="c"
/replace="t"
/db_xref="dbSNP:145093735"
variation 4427
/gene="C5orf24"
/replace="a"
/replace="c"
/db_xref="dbSNP:4418145"
variation 4428
/gene="C5orf24"
/replace="c"
/replace="g"
/db_xref="dbSNP:371291842"
variation 4490
/gene="C5orf24"
/replace="a"
/replace="c"
/db_xref="dbSNP:5028926"
variation 4492
/gene="C5orf24"
/replace="a"
/replace="c"
/db_xref="dbSNP:5028927"
variation 4495
/gene="C5orf24"
/replace="a"
/replace="t"
/db_xref="dbSNP:5028928"
variation 4506
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:62380022"
variation 4508
/gene="C5orf24"
/replace="a"
/replace="t"
/db_xref="dbSNP:140681325"
variation 4511
/gene="C5orf24"
/replace="g"
/replace="t"
/db_xref="dbSNP:5028929"
STS 4805..4946
/gene="C5orf24"
/standard_name="A007F30"
/db_xref="UniSTS:63148"
variation 4857
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:11553310"
STS 4861..4986
/gene="C5orf24"
/standard_name="RH47430"
/db_xref="UniSTS:24779"
variation 4891
/gene="C5orf24"
/replace="a"
/replace="c"
/db_xref="dbSNP:3200480"
variation 4895
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:144649531"
variation 4967
/gene="C5orf24"
/replace="a"
/replace="g"
/db_xref="dbSNP:35694512"
variation 4982
/gene="C5orf24"
/replace="a"
/replace="t"
/db_xref="dbSNP:11553311"
ORIGIN
aacactacagggtggtagcggcctcttcgtactgcgtccggggcaggaccgtgcgcggcggccgcggcgggtgctgggagccagcgcctgcctcgccgccgccctcgctgcctgccactccgtcttggcccgttctccgcaccgtgcagaggcggcgggctggggagggagcggcgccagcacgaggttcccagccgctgggaagcccctagacgcgccgaggggccgggctacgagcggctgagaaaatgatgcatcctgttgccagcagtaatccagctttctgtgggcctggcaagccttcctgcctcaatgaagatgccatgagagctgctgatcagtttgacatatattcctcccagcaaagcaaatacagccacacagtcaaccacaaaccaatggtttgtcagaggcaagacccattaaatgaaacacacttgcagactacaagtggcagaagcatagaaataaaagatgaactaaagaaaaagaagaatctcaaccgatctggtaagcgtggccggccttcgggaaccaccaaatcagcaggataccggaccagcacaggcagacccctgggaaccaccaaagcagctggatttaagacaagtccaggcagacctttggggacaactaaagctgcgggatacaaagtcagcccaggcagacctccaggtagcattaaagctctatcccgtcttgccgatcttggttatggctgtggcactgctgcttttccttaccctatgatgcatggcagagcagttcatggggtagaggaaactagcagtgaagtcaaaccacccaatgagtgaatgaggcaggaaaagagggccaggtttagaaggaagattgtgaataatcccaaagcttcttggttttattttgatatacataattttatggcctgggctttccaaatttgttttcctgtttggtttttttcctgcttttgctcaaaaactgccatatgctgacagatgcactcagggcatgagcagcggcattgtatttgtacataggttcaagtgtaacacctaactaaatcatttttccttttcctttagagttatggtcatgtctcatgtttcattactactttggggctgttctaaatagatgctttatgtgataaacaactgaaaccattatacctattagtttgtgaagtaagcctacagtataataaagacactaacgtatttttaactgatggagcaaaaaagcaaactaatgaatcaggattacttgaggtaatggctgtgtgagtttttgtaacatttattttcacaagatgggacacatatttgtatgctttggcatttacatccacttcaaatgttaaaaaacttatttttaatgttttaggtttaagcagcttgtaatttattgatctacatggcattaattgatttaaccattatacctgaaataattcttcagtgtttgcctttgagcagtgataggttgtgtattttttaattgcctaagagcatatataccaaacactacaaacaattcatatttacagaaaatttaaactattttataaaaactgcacattacatttttggtgaaatatagtgcattctgaggatagcatatttcatataatagaaaaagaagcattctctaggtttgcatgtagctatagtcactatattttgcctttcatatagaaagttttaaagtattatgtttaaaaacatttattggctgggtgtggtggctcacacccagcactttgggaggccgaggcaggcggatcacttgaggtcagcagttcaagactagcctggccaacatggtgaaaccccatctctactaaaaatataaaaattagccaggcgtggtggcgggcgcctgtaatccaagctactggggaggctgaggcaggagaattgcttaaatccaggaggcggaggttgcagtgagccaagattgtgccactgcactccagcctgggtgacagagtaagactccgtctcaaataaataaataaataaataaataaataaataaataaataaaaccatttattgatgttgctcatttatttggaacgtttttagtttttctcagaaattgtcccattgcattagcacttactgtgttttcaggttgatatctaccaaaggacacaaattgaatggtagactgtaaaactggtataaacagaatgcagtttcccgaccatcagaacccaaatattaagaagcatataggaatccatctatgcatgaaacatgtaaaaaatatgttggttagtttaattaaaaatcttattgtgggtccagtgagaccatctcatccaaaagattttttttcccccaatgatgtttgctttagaagcaagatagaaaggaaaaaaagtattaggtagatatgtatagtagggacagagggaaatctttcttctttcctttctgaaagtaatacttcttgttacacattttatttattgagtttgttctaaataaaatattataaacttcagacttgaaaaaattccacttaactttaaagttacaatgtttgtatttgggattttaaatgcctttgagattaaaatgtagaattgcaggacccaaaaacttttaaaataattaaaattttaaaagagcacatgttgtgttttttgggcttgctattaatgcaaactctgattgcaaatggatgtcatgtttcataccttttttatcaggaaaaaagcagcaagccttcaggtgttccagtgatgcctgacacaattgagctggactttatgctgctctttacagtaagaggtgttgcattgtatgtggggactatgtgcactggcgtctaagacagtgacctcaacaatattagctttgcacaaaccatagagaacgatgttggatggttacataatcagttataacattctggcagctaaattgctacaagagctttttcttgcaaaagcttaaaatacaagatttttaataatttactcagaacagtataacttctgacacacacaaatgcttgcctctttattcatatgttcgttacctactctgtacatgtatctgtcatttagctgtttctcaagatgatgttcagcagttggctgcttagaaatctttttcaagccagtttctaaagacatttgtttaatgttctaccatagaataatgcacaccattgtcaaagatttgattattgtgttttatagtaagtccatttgacatttatttccctttcagtttattttccttccttattttgttatacatacccttccctttctcccctgcctttcgtacattcattcctcttcctctaccctccagcacatctacttactggtgctgtgctgtgtgtcagaagataaaacaggtgtattattgtataatgaattttgtatacatgtttatgaaatggtgagatcaactaaaggaggcatgttcataacagtgtttattatcagcagctatgtcccaggaaaaaaaaatgggaggggcaaatggctacagttgtaaatggataacatcatttagaaagccgaatttactgttcatctgagcggttacctggagtattatatctatgcactggtgagcatctcctgattccacttacttttctccctgtgaacagtttaccggtgccatgctgaagagaaagacatctaagtgataacatgaatgaagtcttaaaatttaaagtatttttactgctatataaactaaagactacattgtgcatattttgttaacactgtctcttgttatgataaacactgaaatagcatgttaaacagttgcctatactttaatataatcagttggggaaaactggccttttctcccccactgtatgattgtttcttgaaaggtaaattgctaattttatacagtgtaattctgttcttcacaaaataggtttcattattctatatttaaactgttggtcagaaaatgatctgcaattcaagtaagtctgcattacttttttctttaaaaagtactttaacatgccttatttattatattagcaaatgagctaataacagatgaaattttcattttttgacagatataaccttgcataagtagtatttagggtgattttgatactatctttagagttttgcattggatattaaaaaatatattggcacaatgtattggaagaaaatgagtagtatctggtttaatttttaatatttagggacattttaaaaaatcaatgttttaattagactaaaaattctttatattttttatttactttttaaagaaacatctgtcaaagtaatattgattccaaactgatgtttgtgtgaatttacatgtctattttcatgaactaagaatagagtttctttgagttgaggagaaaaaaatatatatgtgggtccatttattaggttaaagttgacccattcagtgtaaaaataaccatagtgtgtgagctaaagaaaaaaaaaagtaaatttctcctttatattctaagaagctttaaaagaacaattcaggggttattgataactgctactctgtcggtcattgtctctatatgcagtaaaattttatggtccctttataggaatataaagaattcaaaacagtttttcaaaagatttttttccttggacataaaaaattttgatgctattctatttttgtttttattacagcttaactgtatgctgttaaactctaggatgtatctgaatctttccttttttcccccctcctccaaatatataaatctgtgctctcacatgtaatgtatttaatttttggaaaatttaatgctatatagtaaatcaagtgtgtgatttaaagtaatcagatcactttgattcttttaagttttcagaatttcttttttccacaggtaattttggagaaaataattaccaattaactgataataagcacgctgtcctctgctgtaaaaagtctgaatagatactgtgtatgtttttatgtccatgaacttgagctactcgtgtgcaattatgtgtatgggaatggagtagtgttcatgatttgtatctacatcatcatatggatgtatatttattaataaagtcattactttaaaacca
//
by
@meso_cacase at
DBCLS
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