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2024-04-20 01:48:24, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001134672 2565 bp mRNA linear PRI 17-APR-2013
DEFINITION Homo sapiens family with sequence similarity 204, member A
(FAM204A), transcript variant 2, mRNA.
ACCESSION NM_001134672
VERSION NM_001134672.1 GI:197927281
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2565)
AUTHORS Lamesch,P., Li,N., Milstein,S., Fan,C., Hao,T., Szabo,G., Hu,Z.,
Venkatesan,K., Bethel,G., Martin,P., Rogers,J., Lawlor,S.,
McLaren,S., Dricot,A., Borick,H., Cusick,M.E., Vandenhaute,J.,
Dunham,I., Hill,D.E. and Vidal,M.
TITLE hORFeome v3.1: a resource of human open reading frames representing
over 10,000 human genes
JOURNAL Genomics 89 (3), 307-315 (2007)
PUBMED 17207965
REFERENCE 2 (bases 1 to 2565)
AUTHORS Grupe,A., Li,Y., Rowland,C., Nowotny,P., Hinrichs,A.L., Smemo,S.,
Kauwe,J.S., Maxwell,T.J., Cherny,S., Doil,L., Tacey,K., van
Luchene,R., Myers,A., Wavrant-De Vrieze,F., Kaleem,M.,
Hollingworth,P., Jehu,L., Foy,C., Archer,N., Hamilton,G.,
Holmans,P., Morris,C.M., Catanese,J., Sninsky,J., White,T.J.,
Powell,J., Hardy,J., O'Donovan,M., Lovestone,S., Jones,L.,
Morris,J.C., Thal,L., Owen,M., Williams,J. and Goate,A.
TITLE A scan of chromosome 10 identifies a novel locus showing strong
association with late-onset Alzheimer disease
JOURNAL Am. J. Hum. Genet. 78 (1), 78-88 (2006)
PUBMED 16385451
REMARK GeneRIF: Observational study of gene-disease association. (HuGE
Navigator)
REFERENCE 3 (bases 1 to 2565)
AUTHORS Oh,J.H., Yang,J.O., Hahn,Y., Kim,M.R., Byun,S.S., Jeon,Y.J.,
Kim,J.M., Song,K.S., Noh,S.M., Kim,S., Yoo,H.S., Kim,Y.S. and
Kim,N.S.
TITLE Transcriptome analysis of human gastric cancer
JOURNAL Mamm. Genome 16 (12), 942-954 (2005)
PUBMED 16341674
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
DA168924.1, BM837313.1, BC023577.2 and AL365498.21.
Transcript Variant: This variant (2) differs in the 5' UTR when
compared to variant 1.
Sequence Note: The RefSeq transcript and protein were derived from
transcript and genomic sequence to make the sequence consistent
with the reference genome assembly. The extent of this transcript
is supported by transript alignments.
##Evidence-Data-START##
Transcript exon combination :: BQ425453.1, BE410050.1 [ECO:0000332]
RNAseq introns :: mixed/partial sample support
ERS025081, ERS025082 [ECO:0000350]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-7 DA168924.1 5-11
8-663 BM837313.1 1-656
664-905 BC023577.2 848-1089
906-2565 AL365498.21 35892-37551 c
FEATURES Location/Qualifiers
source 1..2565
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="10"
/map="10q26.11"
gene 1..2565
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/note="family with sequence similarity 204, member A"
/db_xref="GeneID:63877"
/db_xref="HGNC:25794"
misc_feature <1..>1660
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/note="annotated region of clone"
exon 1..58
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/inference="alignment:Splign:1.39.8"
exon 59..300
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/inference="alignment:Splign:1.39.8"
CDS 67..768
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/codon_start=1
/product="protein FAM204A"
/protein_id="NP_001128144.1"
/db_xref="GI:197927282"
/db_xref="CCDS:CCDS7605.1"
/db_xref="GeneID:63877"
/db_xref="HGNC:25794"
/translation="
MWSGLLPPGLNESDAESNSEDEATLENSGLNLQEDKEDESIRKTEIIDFSTDEPKTETESNVNAYEECPSGIPIDMWNKFQELHKKHSEQKSTTSRFRGKRRKRSRKDKLKNEKELHSEPSSNETQWKELTQYFGVNDRFDPPVKRKKVEKSGLEKRIDQAVEEWNIEKAEELSNQLATRELGVKIAKAVACHNFVKAKKEVENSQAARKKKKLAWGFEAKKRWETKSNMGYM
"
exon 301..388
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/inference="alignment:Splign:1.39.8"
exon 389..419
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/inference="alignment:Splign:1.39.8"
exon 420..519
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/inference="alignment:Splign:1.39.8"
exon 520..609
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/inference="alignment:Splign:1.39.8"
exon 610..716
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/inference="alignment:Splign:1.39.8"
STS 654..754
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/standard_name="RH143414"
/db_xref="UniSTS:232661"
STS 667..790
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/standard_name="SHGC-76092"
/db_xref="UniSTS:75119"
exon 717..2565
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/inference="alignment:Splign:1.39.8"
STS 724..830
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/standard_name="G22405"
/db_xref="UniSTS:51049"
STS 817..909
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/standard_name="RH93408"
/db_xref="UniSTS:88554"
variation 1119
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/replace="c"
/replace="t"
/db_xref="dbSNP:201808962"
polyA_signal 1827..1832
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
polyA_site 1860
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
STS 1879..2060
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/standard_name="SHGC-52428"
/db_xref="UniSTS:7398"
STS 1882..2157
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
/standard_name="SHGC-132812"
/db_xref="UniSTS:170902"
polyA_site 2274
/gene="FAM204A"
/gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
ORIGIN
agaaggcgcgatgttgacggggtcctaagatggctgctgggcgaccacttcctgacagaagaaaagatgtggagtgggctgctacctcctggcctaaatgaaagtgacgctgagtcaaactcggaagatgaagctacgttggagaactctggacttaacttacaggaagataaagaggatgagagcatcagaaaaacagaaatcatagatttctcaacagatgaaccaaaaactgaaacagagtcaaatgtaaatgcctatgaagagtgtccttctggaattcccatagatatgtggaataaatttcaagaattgcataaaaaacattctgaacagaaaagcacaacctcaagattcagagggaaaagaagaaaacgctccagaaaagataaattgaagaatgaaaaagaattacatagtgaaccgtcctcaaatgaaacccagtggaaagagcttactcagtattttggagtcaatgatagatttgacccgcctgttaaaaggaaaaaagttgagaagtcaggccttgaaaagaggatagaccaggctgtggaggagtggaatattgagaaggctgaggaactcagcaaccagctagctactcgagagcttggtgtaaaaattgccaaagcagttgcctgccacaactttgtaaaagccaaaaaggaggttgaaaattcacaggctgcccgaaaaaagaagaaacttgcatgggggtttgaagcaaagaagagatgggaaaccaaaagcaacatgggatacatgtaacttgccagagtgcttcaagacatttgtagactcaaatgctcaatttactgagaatgttttcctgcctatgttaatatgtcagaaaattgatagcactaaaacaaaaataagcataaaatttgggattttgattatcagctcttttcagtctttctttaaggactttgtcctattgaagtgaataaaatgaagcattctgttatttgtataagaaatgtaagaaaaaaaatatagaaagaagaggataggattttgtttatttgtatggatggacccttggtataaaatcacttttggcgctttccattcatttggtttagcacagccagtgagcttctcgtactttctttctttttttttttttttttgagacagagcctcgcttgctctgtcacccaggctagagtgcagtagcacgatcttggctcactgcaaccactgcttcctgggttcaagtgattctcatgcctcagcctcctgagtagctgggattatggacaaatgccaccacacccggctaattttttttttttttttgtatttttagtagagacagagttttgctgtgttggtcaggctggtcttgaactcctggcctcatatgattcacctgcctctgcctcccaaagttctgggagtacagacatgagctaccatgctgcccttgtattttcttatctgtacccagtgtaactacacgtttactggaactgtgtttttaagactgacagttgtttataatggattagtcgtaagtaccaaaaagtctcagttgatattatctttacaaatgacttgaccttaatgttataaaagtagttactgtttttttttaattggaggcagacttgatatttcagagttgcatagtaaaagcaatttgttaatttttgtgtactttcagataaactattacaataaagaaaggagcagaatgtagtatttggaagatgatttaaattcagcaacgcctaaaaatgtcttcctaagtatttttctcagccatgtcattctttaaattatgagatggttcttagaagagaaaatggtgtaattgtattaaacagacaattataactcaagataatataactttgaaccttctaagaactgatttgtttggttttcctcccattccccattcctccttaaaagattgaatgaattaatgagcagaaagagaggattggtaacatgggaaatcgttttcattagatgtacatttcctggttctgacaggaaaggggctccagaaaatcataaaacaagcaggtgaacaagaccaggtgtgtcggcacctccctgctcagtgcccagcggaggtaaagaaccactcagcatggtttttgtcagttcacctcttctgtcgttgtcagaggtttcctacctgtctgatataaactttctctgggttgataatataaattcagaaacatgtaaaatgaatcatgattatattactgttatttttagacttaaaatagtaacaaaattttatttatggtggcacatttaatggctttttttttctgtgttctggaataagagaatacctagctactatttaagcatccaaaaatcatatcttgctttcatttagttgagaaaagccagcatagagaaagcaaagttttagaatattatgtgtcatactaattcagtatccagaccaaatgttggaaagtcttattttatgatttaatatcccttgttccattttacagatatgatcatgtaaaacttacctacaatattcatttcaaactgctaaattaggtaaatacagacttttagtat
//
by
@meso_cacase at
DBCLS
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