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2020-10-26 18:32:34, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_001128924            4213 bp    mRNA    linear   PRI 17-APR-2013
DEFINITION  Homo sapiens SH3 domain containing 19 (SH3D19), transcript variant
            3, mRNA.
ACCESSION   NM_001128924
VERSION     NM_001128924.1  GI:193083144
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4213)
  AUTHORS   Szafranski,K., Schindler,S., Taudien,S., Hiller,M., Huse,K.,
            Jahn,N., Schreiber,S., Backofen,R. and Platzer,M.
  TITLE     Violating the splicing rules: TG dinucleotides function as
            alternative 3' splice sites in U2-dependent introns
  JOURNAL   Genome Biol. 8 (8), R154 (2007)
   PUBMED   17672918
  REMARK    GeneRIF: occurrence of an unusual TG 3' splice site in intron 6
REFERENCE   2  (bases 1 to 4213)
  AUTHORS   Borner,G.H., Harbour,M., Hester,S., Lilley,K.S. and Robinson,M.S.
  TITLE     Comparative proteomics of clathrin-coated vesicles
  JOURNAL   J. Cell Biol. 175 (4), 571-578 (2006)
   PUBMED   17116749
REFERENCE   3  (bases 1 to 4213)
  AUTHORS   Nguyen,T.T., Ma,L.N., Slovak,M.L., Bangs,C.D., Cherry,A.M. and
            Arber,D.A.
  TITLE     Identification of novel Runx1 (AML1) translocation partner genes
            SH3D19, YTHDf2, and ZNF687 in acute myeloid leukemia
  JOURNAL   Genes Chromosomes Cancer 45 (10), 918-932 (2006)
   PUBMED   16858696
REFERENCE   4  (bases 1 to 4213)
  AUTHORS   Oh,J.H., Yang,J.O., Hahn,Y., Kim,M.R., Byun,S.S., Jeon,Y.J.,
            Kim,J.M., Song,K.S., Noh,S.M., Kim,S., Yoo,H.S., Kim,Y.S. and
            Kim,N.S.
  TITLE     Transcriptome analysis of human gastric cancer
  JOURNAL   Mamm. Genome 16 (12), 942-954 (2005)
   PUBMED   16341674
REFERENCE   5  (bases 1 to 4213)
  AUTHORS   Tanaka,M., Nanba,D., Mori,S., Shiba,F., Ishiguro,H., Yoshino,K.,
            Matsuura,N. and Higashiyama,S.
  TITLE     ADAM binding protein Eve-1 is required for ectodomain shedding of
            epidermal growth factor receptor ligands
  JOURNAL   J. Biol. Chem. 279 (40), 41950-41959 (2004)
   PUBMED   15280379
  REMARK    GeneRIF: yeast two-hybrid screening using the cytoplasmic domain of
            ADAM12 as bait identified a protein designated Eve-1. Eve-1 plays a
            role in positively regulating the activity of ADAMs in the
            signaling of EGFR-ligand shedding.
REFERENCE   6  (bases 1 to 4213)
  AUTHORS   Yam,J.W., Jin,D.Y., So,C.W. and Chan,L.C.
  TITLE     Identification and characterization of EBP, a novel EEN binding
            protein that inhibits Ras signaling and is recruited into the
            nucleus by the MLL-EEN fusion protein
  JOURNAL   Blood 103 (4), 1445-1453 (2004)
   PUBMED   14551139
  REMARK    GeneRIF: identified and characterized EBP, a novel EEN binding
            protein that interacts with the SH3 domain of EEN; normally
            expressed in cytoplasm but recruited to the nucleus by MLL-EEN
            [EBP]
REFERENCE   7  (bases 1 to 4213)
  AUTHORS   Wistow,G., Bernstein,S.L., Wyatt,M.K., Behal,A., Touchman,J.W.,
            Bouffard,G., Smith,D. and Peterson,K.
  TITLE     Expressed sequence tag analysis of adult human lens for the NEIBank
            Project: over 2000 non-redundant transcripts, novel genes and
            splice variants
  JOURNAL   Mol. Vis. 8, 171-184 (2002)
   PUBMED   12107413
  REMARK    Publication Status: Online-Only
REFERENCE   8  (bases 1 to 4213)
  AUTHORS   Kirchhausen,T.
  TITLE     Three ways to make a vesicle
  JOURNAL   Nat. Rev. Mol. Cell Biol. 1 (3), 187-198 (2000)
   PUBMED   11252894
  REMARK    Review article
            Erratum:[Nat Rev Mol Cell Biol 2001 Mar;2(3):216]
REFERENCE   9  (bases 1 to 4213)
  AUTHORS   Lippincott-Schwartz,J., Roberts,T.H. and Hirschberg,K.
  TITLE     Secretory protein trafficking and organelle dynamics in living
            cells
  JOURNAL   Annu. Rev. Cell Dev. Biol. 16, 557-589 (2000)
   PUBMED   11031247
  REMARK    Review article
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from BC108893.1, BC032404.1,
            CD675494.1, BM831166.1, AW263019.1 and BM670337.1.
            
            Summary: This gene encodes a multiple SH3 domain-containing
            protein, which interacts with other proteins, such as EBP and
            members of ADAM family, via the SH3 domains. This protein may be
            involved in suppression of Ras-induced cellular transformation and
            Ras-mediated activation of ELK1 by EBP, and regulation of ADAM
            proteins in the signaling of EGFR-ligand shedding. Alternatively
            spliced transcript variants encoding different isoforms have been
            found for this gene. [provided by RefSeq, Aug 2011].
            
            Transcript Variant: This variant (3) lacks an in-frame coding exon
            in the 5' region compared to variant 1. This results in a shorter
            isoform (3) missing an internal protein segment compared to isoform
            1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC108893.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           ERS025098 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2656              BC108893.1         1-2656
            2657-3036           BC032404.1         3515-3894
            3037-3481           CD675494.1         173-617
            3482-4045           BM831166.1         92-655
            4046-4192           AW263019.1         17-163              c
            4193-4213           BM670337.1         1-21                c
FEATURES             Location/Qualifiers
     source          1..4213
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="4"
                     /map="4q31.3"
     gene            1..4213
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /note="SH3 domain containing 19"
                     /db_xref="GeneID:152503"
                     /db_xref="HGNC:30418"
                     /db_xref="MIM:608674"
     exon            1..883
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /inference="alignment:Splign:1.39.8"
     CDS             190..2385
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /note="isoform 3 is encoded by transcript variant 3; SH3
                     domain-containing protein 19; SH3 domain protein D19;
                     EEN-binding protein; ADAM-binding protein Eve-1"
                     /codon_start=1
                     /product="SH3 domain-containing protein 19 isoform 3"
                     /protein_id="NP_001122396.1"
                     /db_xref="GI:193083145"
                     /db_xref="CCDS:CCDS47143.1"
                     /db_xref="GeneID:152503"
                     /db_xref="HGNC:30418"
                     /db_xref="MIM:608674"
                     /translation="
MNIMNTEQSQNSIVSRIKVFEGQTNIETSGLPKKPEITPRSLPPKPTVSSGKPSVAPKPAANRASGEWDSGTENRLKVTSKEGLTPYPPLQEAGSIPVTKPELPKKPNPGLIRSVNPEIPGRGPLAESSDSGKKVPTPAPRPLLLKKSVSSENPTYPSAPLKPVTVPPRLAGASQAKAYKSLGEGPPANPPVPVLQSKPLVDIDLISFDDDVLPTPSGNLAEESVGSEMVLGLHEDPQSPPPLPAEKPIGNTFSTVSGKLSNVERTRNLESNHPGQTGGFVRVPPRLPPRPVNGKTIPTQQPPTKVPPERPPPPKLSATRRSNKKLPFNRSSSDMDLQKKQSNLATGLSKAKSQVFKNQDPVLPPRPKPGHPLYSKYMRGDVLVMLKQTENNYLECQKGEDTGRVHLSQMKIITPLDEHLRSRPNDPSHAQKPVDSGAPHAVVLHDFPAEQVDDLNLTSGEIVYLLEKIDTDWYRGNCRNQIGIFPANYVKVIIDIPEGGNGKRECVSSHCVKGSRCVARFEYIGEQKDELSFSEGEIIILKEYVNEEWARGEVRGRTGIFPLNFVEPVEDYPTSGANVLSTKVPLKTKKEDSGSNSQVNSLPAEWCEALHSFTAETSDDLSFKRGDRIQILERLDSDWCRGRLQDREGIFPAVFVRPCPAEAKSMLAIVPKGRKAKALYDFRGENEDELSFKAGDIITELESVDDDWMSGELMGKSGIFPKNYIQFLQIS
"
     misc_feature    <1324..1416
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /note="Src Homology 3 domain superfamily; Region: SH3;
                     cl17036"
                     /db_xref="CDD:213143"
     misc_feature    order(1363..1368,1405..1407,1411..1416)
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212690"
     misc_feature    1507..1662
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /note="Second Src homology 3 domain of ADAM-binding
                     protein Eve-1; Region: SH3_Eve1_2; cd11815"
                     /db_xref="CDD:212749"
     misc_feature    order(1522..1524,1528..1530,1537..1539,1549..1551,
                     1603..1608,1645..1647,1651..1656)
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212749"
     misc_feature    1735..1887
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /note="Third Src homology 3 domain of ADAM-binding protein
                     Eve-1; Region: SH3_Eve1_3; cd11816"
                     /db_xref="CDD:212750"
     misc_feature    order(1750..1752,1756..1758,1765..1767,1777..1779,
                     1831..1836,1873..1875,1879..1884)
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212750"
     misc_feature    2005..2154
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /note="Fourth Src homology 3 domain of ADAM-binding
                     protein Eve-1; Region: SH3_Eve1_4; cd11817"
                     /db_xref="CDD:212751"
     misc_feature    order(2020..2022,2026..2028,2035..2037,2047..2049,
                     2101..2106,2143..2145,2149..2154)
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212751"
     misc_feature    2212..2361
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /note="Fifth Src homology 3 domain of ADAM-binding protein
                     Eve-1; Region: SH3_Eve1_5; cd11818"
                     /db_xref="CDD:212752"
     misc_feature    order(2227..2229,2233..2235,2242..2244,2254..2256,
                     2308..2313,2350..2352,2356..2361)
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /note="peptide ligand binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:212752"
     exon            884..996
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /inference="alignment:Splign:1.39.8"
     exon            997..1058
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /inference="alignment:Splign:1.39.8"
     exon            1059..1323
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /inference="alignment:Splign:1.39.8"
     exon            1324..1464
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /inference="alignment:Splign:1.39.8"
     exon            1465..1537
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /inference="alignment:Splign:1.39.8"
     exon            1538..1668
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /inference="alignment:Splign:1.39.8"
     exon            1669..1727
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /inference="alignment:Splign:1.39.8"
     exon            1728..1930
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /inference="alignment:Splign:1.39.8"
     exon            1931..1983
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /inference="alignment:Splign:1.39.8"
     exon            1984..2170
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /inference="alignment:Splign:1.39.8"
     exon            2171..2268
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /inference="alignment:Splign:1.39.8"
     exon            2269..4195
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /inference="alignment:Splign:1.39.8"
     STS             2930..3083
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /standard_name="SHGC-31182"
                     /db_xref="UniSTS:74763"
     variation       2945
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:1046126"
     variation       2965
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:1046133"
     STS             3913..4039
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /standard_name="A009Z47"
                     /db_xref="UniSTS:4599"
     STS             3913..4039
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /standard_name="G33033"
                     /db_xref="UniSTS:117610"
     variation       4126
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:1046168"
     polyA_signal    4169..4174
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
     polyA_site      4195
                     /gene="SH3D19"
                     /gene_synonym="EBP; EVE1; Kryn; SH3P19"
ORIGIN      
cccagtgctacaagatgtccagtgccaaaaccaagatcaaaaagcaacctcagaccaatacccagagattctcacattaaagagcaaagtcaacagaaaatcagcccagcagccgtaggagaggagtcatccccaggccggccccagtctctgctggacaacgctagcacctcagacagtcaggcagtgatgaacattatgaacacagaacaaagccaaaatagtattgtttccagaattaaagtgtttgagggtcagacaaacatagaaacctcaggactgcccaagaaaccagaaattactccacgttcacttcctccaaagcctactgtttcctcagggaaaccttctgtagctcccaaaccagctgctaacagagcttctggagagtgggactctgggactgagaacagactcaaggtgacctccaaggaaggactcaccccataccctcccctgcaagaagcgggaagcatcccagtaaccaaacctgaattgccaaagaaaccaaaccctggccttatacgaagtgttaatcctgagattccgggaagagggcccctggctgagagctctgatagtgggaagaaagtgccaactcctgccccgcggcctttgctgctgaagaaatctgtttcctcagaaaaccccacctacccttcagctccactgaaacctgtcactgttcctccccgactcgcaggggcatcacaagccaaagcatacaagtcactgggagaagggcccccagccaaccccccagttccagttctgcagagcaagcccttggtggacatcgatctcatcagctttgatgatgatgttttgcccaccccatcggggaacctggctgaagaatctgttggttcagagatggttctaggtttacatgaggatccacaaagtccacctcctctccctgctgaaaaacctattggaaacactttcagtacagtatctggaaagctcagtaatgttgagagaactagaaacttggaatccaaccacccaggtcaaacaggaggttttgtgcgagtacccccaaggttgccaccgagacctgtgaatggaaaaaccattccaactcaacagcctccaaccaaggtgccccctgagagaccacctcccccaaagctttctgcaaccagaagatctaataagaaactgccttttaatcgatcctcttctgacatggatcttcagaaaaaacaaagtaacttggcaactggactctcaaaagccaagagtcaagtttttaaaaatcaagatccggtgctaccccctcgtcccaaaccaggacaccctctctacagtaaatacatgcgtggggatgtacttgtgatgctgaagcagacggaaaataattacttggagtgccaaaagggagaagacactggcagagttcacctgtctcaaatgaagattatcactccacttgatgaacatcttagaagcagaccaaacgatccaagccacgctcagaagcctgttgacagtggtgctcctcatgctgtcgttcttcatgatttcccagcagagcaagttgatgatttgaacctcacttctggagaaattgtttatcttctggagaagatagatacagattggtacagagggaactgtagaaaccagattggcatatttcctgccaactatgtcaaagtgattattgatatcccagaaggaggaaatgggaaaagagaatgtgtttcatctcattgtgttaaaggctcaagatgtgttgctcggtttgaatatattggagagcagaaggatgagttgagtttctcagagggagaaattattattcttaaagagtatgtgaatgaggaatgggccagaggagaagttcgaggcagaactgggattttccccctgaactttgtggagcctgttgaggattatcccacctctggtgcaaatgttttaagcacaaaggtaccactgaaaaccaaaaaagaagattctggctcaaactctcaggttaacagtcttccggcagaatggtgtgaagctcttcacagttttacagcagagaccagtgatgacttatcattcaagaggggagaccggatccagattctggaacgtctggattctgactggtgcaggggcagactgcaggacagggaggggatcttcccagcagtgtttgtgaggccctgcccagctgaggcaaaaagtatgttggccatagtaccgaaggggaggaaggccaaagccttatatgatttccgaggggagaatgaagatgaactttccttcaaggctggagatataataacagagctggaatctgtagatgatgactggatgagtggagaacttatgggaaaatctggaatatttcccaaaaactacatacagtttctacagatcagctagaggagaagcttgtctgtgttccttggcacaagaactcacttgaactatcaccttgactatcagatatgtttttgcactattttttttaactgaaaaagaaatatctaagctgtacatggtacactagaattttctgaaagcagaaaacgttcagattttgtagttaattttcattacaatagaaacatgcacatggaaacccatgagctaggattctaccgaggaaaacatctagtgggattagcaaggtgaagggaaagcatctggtggcatggcagcatggggaggctcacacacagaagttgcacgtggacatctgttttaatcagcacaagtgaattaaccatgcttcttcatttttttactttagttaaaaaagaggacatttaatattctacatgctgtaactatcaggacatggttagcaatctcaatttcatttttgatattcaaattaattcttacagcttgagcatatcagccttattaccagagcaaatccttccttcagatgggatagtttactgactagttggagcatttgtaagcacatggtgaaatcagcccctgcccaccaaaataatctttatgttaccaagtgattcccatttgtctaaggatttgaagggggtctaaattggatgtatcttacttagtctaaagaaccaaaaccatccctgaaatgccttgctaatacaactaatccttccatatatgtgccatacttatttttttcctcagtgtatactttatgttaacagggttattacaaagcacattttctgaatctgcaatcattcctttgacaattactggacccaaaggaaaattcattttctttgcattattccagtaatatataaaaactgtgtcttgttatagtagtacattatgaatcacatataaaatcttacaatacagaacaactgttaagatggaaaacagtgccaaacctccacagctcatttctttgtaatataatcagaatgaaaaataatttaagaggacagaagactggtacttttttgttttattttttctctagcttatccctgcacaattattagagtgaatgaaaaaccactttcctgctttccattgttataaattctaagcttaagataaaagtggttctttacatgactgaatcaattacaatttatgggctagagccaaataggttgaagacaatcatccaaacagatcaatggaatagaatttcattggaaatgtaaaacactttcccaacaatggtcatgactttcttctgtttttgagaagagtttcatatgctggaccacattttagcttttattgttttttttttcccattgtccaaaaagttaagcaacaagtggccacacttttacgtgactacaacctggagttctgcaaagaaggtaatatttacttggtctttgactaaagttatctccccattctatggttacattttattttggactatggggacttctaatacgttttggtaaagaagagagtataaagaaaattcttgtcaaatttcactcaaaagtaatttcatgagaaatcaatgatttaaagcattatccaaattaaattatcatttgcagcaaactgtacaacagcaggaaggatatggaatggaacatgaggtatatatctttgcctttataattttaacatcttatattgaagattctgaaaacctatctttattagaggaaaatctcaatcttcagttttggccttctgtcagcagaatgataagtgcaatagttgtaaatctacttgacactgtaataaactgaactgaactttcaaagtcaaaaaaaaaaaaaaaaaa
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:152503 -> Molecular function: GO:0005515 [protein binding] evidence: IPI
            GeneID:152503 -> Molecular function: GO:0070064 [proline-rich region binding] evidence: IPI
            GeneID:152503 -> Biological process: GO:0006892 [post-Golgi vesicle-mediated transport] evidence: TAS
            GeneID:152503 -> Biological process: GO:0007010 [cytoskeleton organization] evidence: IMP
            GeneID:152503 -> Biological process: GO:0016044 [cellular membrane organization] evidence: TAS
            GeneID:152503 -> Biological process: GO:0022604 [regulation of cell morphogenesis] evidence: IMP
            GeneID:152503 -> Biological process: GO:0051044 [positive regulation of membrane protein ectodomain proteolysis] evidence: IMP
            GeneID:152503 -> Cellular component: GO:0005634 [nucleus] evidence: IDA
            GeneID:152503 -> Cellular component: GO:0005730 [nucleolus] evidence: IDA
            GeneID:152503 -> Cellular component: GO:0005794 [Golgi apparatus] evidence: IDA
            GeneID:152503 -> Cellular component: GO:0005829 [cytosol] evidence: TAS
            GeneID:152503 -> Cellular component: GO:0005886 [plasma membrane] evidence: IDA

by @meso_cacase at DBCLS
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