2024-04-18 12:07:50, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001105528 3398 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens coiled-coil domain containing 178 (CCDC178), transcript variant 1, mRNA. ACCESSION NM_001105528 VERSION NM_001105528.1 GI:157671918 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3398) AUTHORS Tao,S., Wang,Z., Feng,J., Hsu,F.C., Jin,G., Kim,S.T., Zhang,Z., Gronberg,H., Zheng,L.S., Isaacs,W.B., Xu,J. and Sun,J. TITLE A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants JOURNAL Carcinogenesis 33 (3), 598-603 (2012) PUBMED 22219177 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC091517.1, AC104956.6, BC130535.1, AC025888.8 and AK000027.1. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). ##Evidence-Data-START## Transcript exon combination :: BC130535.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support ERS025084 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1535 BC091517.1 42-1576 1536-1536 AC104956.6 56342-56342 c 1537-1942 BC130535.1 1474-1879 1943-1943 AC025888.8 164652-164652 c 1944-3085 BC130535.1 1881-3022 3086-3398 AK000027.1 607-919 FEATURES Location/Qualifiers source 1..3398 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="18" /map="18q12.1" gene 1..3398 /gene="CCDC178" /gene_synonym="C18orf34" /note="coiled-coil domain containing 178" /db_xref="GeneID:374864" /db_xref="HGNC:29588" exon 1..120 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 121..200 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" misc_feature 125..127 /gene="CCDC178" /gene_synonym="C18orf34" /note="upstream in-frame stop codon" CDS 143..2746 /gene="CCDC178" /gene_synonym="C18orf34" /note="isoform 1 is encoded by transcript variant 1; coiled-coil domain-containing protein 178" /codon_start=1 /product="coiled-coil domain-containing protein 178 isoform 1" /protein_id="NP_001098998.1" /db_xref="GI:157671919" /db_xref="CCDS:CCDS42424.1" /db_xref="GeneID:374864" /db_xref="HGNC:29588" /translation="
MTENKTVSSSSTRDDQTNIGLTCQEVKALREKAWSRTNEGNAMSQSLVLYGASKENSEGFHESKMTNTEGVNKGIYFSYPCRRHSCAVVNIPAPCVNKMISHIQDVESKIQEHLKRFETSFEEWSRTSSTKDLKEDWSVTTPVKEVKPGEKRDEKCPELKQEMETLLSEAIRLIKSLETDRADAEEALKQQRSRKNMINMKIDSWSVWKLQELPLAVQKEHEAYLSDVIELQWHLEDKANQLQHFEKQKTELEEANAKIQADIDYMNEHGPLLDSKQNQELQDLKNHYKKKMEVMDLHRKVNEELEEALEACENARLKAQQIKEEIDKDIYQDEKTIEAYKREIYQLNSLFDHYSSSVINVNTNIEEKEEEVTEAIRETKSSKNELHSLSKMLEDLRRVYDQLTWKQKSHENQYLEAVNDFYAAKKTWDIELSDVAKDFSAISLACTKLTEDNKKLEIDINKITVKTNESIRKKSKYESEIKYLTIMKLKNDKHLKNIYKEAYRIGTLFHLTKHKTDEMEDKIAEVRRKFKGREEFLKKLTQGEVAAGMVLQKKLYSIYEVQALERKELIKNRAICAMSLAELQEPLLQLEDEAERIRSLDKEHSVMLNNIIDQKDLIRRKVGKVKKKLRKKGKKTLDALIETESKRSAIFKDLEATKSKTMIFYAKINELNEELKAKEEEKKSFDQTLEILKNKFITMRFKREHAQTVFDHYMQEKKDCEERIFEEDQRFRVLLAVRQKTLQDTQKIIADSLEENLRLAQEYQQLQITFLKEKDNYFNIYDKQLSLDTSIRDKKQLCQLQRRMHTLWQEHFKLVVLFSQMRLANFQTDSQESIQKILAVQEESSNLMQHILGFFQTLTDGTCENDG
" exon 201..260 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 261..350 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 351..490 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 491..513 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 514..599 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 600..800 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 801..1021 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 1022..1164 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 1165..1318 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 1319..1414 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 1415..1551 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 1552..1735 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 1736..1798 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 1799..1960 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" variation 1941 /gene="CCDC178" /gene_synonym="C18orf34" /replace="g" /replace="t" /db_xref="dbSNP:457896" variation 1943 /gene="CCDC178" /gene_synonym="C18orf34" /replace="a" /replace="g" /db_xref="dbSNP:466113" exon 1961..2074 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 2075..2220 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 2221..2380 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 2381..2530 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 2531..2665 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 2666..3355 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" STS 2936..3113 /gene="CCDC178" /gene_synonym="C18orf34" /standard_name="RH92259" /db_xref="UniSTS:88116" variation 3053 /gene="CCDC178" /gene_synonym="C18orf34" /replace="g" /replace="t" /db_xref="dbSNP:1052411" ORIGIN
tgtctgctcaatcaagtcaaatactgaacaacttcctggcggagaggctgagaattttatacttgcttgctcgaaagcaccccaaataagatgatccacgccaacacctcccctttacaggttttaaaatattcttataactatgactgaaaacaagacagtttcctcttcttccactagagatgatcaaaccaatataggtttaacatgtcaggaagtaaaggctctcagagagaaggcatggtcaaggacaaatgaaggcaatgccatgtctcaaagtttggttctatatggagcctctaaggagaacagtgaaggttttcatgaaagtaaaatgacaaatactgaaggggtgaataaaggcatttactttagctacccatgtcgacgtcacagctgtgccgtagtaaatattccagcaccttgtgtcaacaaaatgatttcacacatccaagatgtggagtccaaaatacaggagcatttgaaaaggtttgaaacttcttttgaagaatggagcagaacttcttccacaaaagacctgaaagaagattggagtgtaactacaccagtgaaagaggtcaaaccaggagaaaagagagatgaaaagtgtccagagttaaagcaggaaatggaaacattgctctcagaggccattcgtctcattaaaagtctagaaactgaccgggcagacgctgaagaagctttaaaacaacagagatcaagaaagaatatgattaacatgaaaattgactcttggtcagtctggaaacttcaagaactcccattggctgtgcagaaagaacatgaggcctatttgagtgatgttatagaattacaatggcatcttgaagataaagctaatcaactacaacattttgaaaaacaaaagacagagttagaagaagcaaatgcaaagattcaagcagacatagactacatgaatgaacatggccctctactggactctaagcagaatcaggaacttcaagatctgaagaaccattataaaaaaaaaatggaggtaatggacctacacagaaaagttaatgaagaacttgaagaagctttagaagcctgtgaaaatgccagattgaaggctcagcaaattaaagaagagattgataaggatatttaccaggatgaaaaaaccatagaggcctacaagagagagatatatcaacttaacagtctatttgatcattactcttcatcagtgataaatgttaatactaatattgaggagaaggaagaggaagtgactgaagcaataagggaaacaaagtcatcaaaaaatgaattacattctctatcaaaaatgctggaagatttgagaagagtttatgaccaactaacctggaagcaaaaaagtcatgaaaatcagtatctggaagcagttaatgatttttatgctgcaaaaaaaacatgggatattgagctttctgatgttgcaaaagatttttcagctatttctttggcatgtacaaaactgacggaagacaataaaaaacttgagattgatattaacaaaataacagtaaaaaccaatgaaagcatacggaaaaaatcaaaatacgaatctgaaataaaatatttgacaataatgaagttaaagaatgataaacatctcaagaacatctataaggaggcttatcgcattggtactcttttccacctaaccaaacacaagacagatgaaatggaagataaaatagcagaagtgagaagaaagttcaagggtagagaagaattcctgaaaaaactcactcaaggtgaagtggctgctggaatggtgcttcagaaaaaactatattccatttacgaagtccaggcacttgagcggaaagagcttataaaaaatagagcaatatgtgccatgtcactggcagaactacaggaacctctgcttcaactagaagatgaagctgaaagaatcagaagtctcgacaaagaacattctgttatgcttaataatataattgatcagaaagatcttattagaagaaaggtgggaaaagtaaagaaaaaattacgaaaaaaggggaagaaaacccttgatgcattaatagaaactgagagtaaacgctcagcaatttttaaagacctagaagcaactaaaagtaagacaatgattttttatgcaaaaataaatgaattgaatgaggaattaaaagcaaaagaagaagaaaagaaaagttttgatcagacacttgaaatattaaagaacaaatttataactatgagatttaaaagggaacatgcacaaactgtgtttgatcattatatgcaagagaaaaaagactgtgaagagagaatctttgaggaagatcagagatttagagtgctccttgctgtaagacaaaaaactcttcaagatacccaaaaaataatagctgattcacttgaagaaaatctgcgtttagctcaagagtatcaacagctacagattacattcttaaaagaaaaggacaattatttcaatatatatgataaacagctatcacttgatacttcaattagagataagaaacagctctgtcagctgcagagaaggatgcacacactgtggcaggagcacttcaaactggtggtcctcttcagccagatgaggctggccaacttccagacagactctcaggagagtattcagaaaatattagctgtgcaggaggaatcttcaaatttaatgcaacacatcttaggtttcttccagactttgacagatggcacatgcgaaaacgatggttaagcaaacaaccaatgtatcttggatgctgaaataaaagacaagaaaagtcacacagttcagataacagtgtaattggacattcacctgtttgccatttcacacttccatgaacgaaaaactcactcacctcccagcatgctttgccactcttttactcacagcaaatccataacaatgaaacaggtgactttcatgctgctgtcaggaacgatctaatttcagctctgggtgactgattgcaattggctttgcctcatctgataattaatctatgtcaccattaattggaagagagaataattactggcggtgttgacagtgactgttcgcttccccagatttccctatcgtcttggcccaaataaaggctttgccattcagtacttaaagtttgtgtaaactgtaacaatatctatgcccatgtgacactttgagacactctgtctaatgtacttttgtttttgtgtttaccagtcttttttagctcactgagagctgtctctctcaatcactcctcaatgttctatcttaattttgtggaagtttaaagttttcaatgagctggagatgaatgattaatgaataaatttaaatgcttcattttgtccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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