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2024-04-18 12:07:50, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001105528 3398 bp mRNA linear PRI 17-APR-2013
DEFINITION Homo sapiens coiled-coil domain containing 178 (CCDC178),
transcript variant 1, mRNA.
ACCESSION NM_001105528
VERSION NM_001105528.1 GI:157671918
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3398)
AUTHORS Tao,S., Wang,Z., Feng,J., Hsu,F.C., Jin,G., Kim,S.T., Zhang,Z.,
Gronberg,H., Zheng,L.S., Isaacs,W.B., Xu,J. and Sun,J.
TITLE A genome-wide search for loci interacting with known prostate
cancer risk-associated genetic variants
JOURNAL Carcinogenesis 33 (3), 598-603 (2012)
PUBMED 22219177
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
BC091517.1, AC104956.6, BC130535.1, AC025888.8 and AK000027.1.
Transcript Variant: This variant (1) represents the longer
transcript and encodes the longer isoform (1).
##Evidence-Data-START##
Transcript exon combination :: BC130535.1 [ECO:0000332]
RNAseq introns :: mixed/partial sample support
ERS025084 [ECO:0000350]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-1535 BC091517.1 42-1576
1536-1536 AC104956.6 56342-56342 c
1537-1942 BC130535.1 1474-1879
1943-1943 AC025888.8 164652-164652 c
1944-3085 BC130535.1 1881-3022
3086-3398 AK000027.1 607-919
FEATURES Location/Qualifiers
source 1..3398
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="18"
/map="18q12.1"
gene 1..3398
/gene="CCDC178"
/gene_synonym="C18orf34"
/note="coiled-coil domain containing 178"
/db_xref="GeneID:374864"
/db_xref="HGNC:29588"
exon 1..120
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 121..200
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
misc_feature 125..127
/gene="CCDC178"
/gene_synonym="C18orf34"
/note="upstream in-frame stop codon"
CDS 143..2746
/gene="CCDC178"
/gene_synonym="C18orf34"
/note="isoform 1 is encoded by transcript variant 1;
coiled-coil domain-containing protein 178"
/codon_start=1
/product="coiled-coil domain-containing protein 178
isoform 1"
/protein_id="NP_001098998.1"
/db_xref="GI:157671919"
/db_xref="CCDS:CCDS42424.1"
/db_xref="GeneID:374864"
/db_xref="HGNC:29588"
/translation="
MTENKTVSSSSTRDDQTNIGLTCQEVKALREKAWSRTNEGNAMSQSLVLYGASKENSEGFHESKMTNTEGVNKGIYFSYPCRRHSCAVVNIPAPCVNKMISHIQDVESKIQEHLKRFETSFEEWSRTSSTKDLKEDWSVTTPVKEVKPGEKRDEKCPELKQEMETLLSEAIRLIKSLETDRADAEEALKQQRSRKNMINMKIDSWSVWKLQELPLAVQKEHEAYLSDVIELQWHLEDKANQLQHFEKQKTELEEANAKIQADIDYMNEHGPLLDSKQNQELQDLKNHYKKKMEVMDLHRKVNEELEEALEACENARLKAQQIKEEIDKDIYQDEKTIEAYKREIYQLNSLFDHYSSSVINVNTNIEEKEEEVTEAIRETKSSKNELHSLSKMLEDLRRVYDQLTWKQKSHENQYLEAVNDFYAAKKTWDIELSDVAKDFSAISLACTKLTEDNKKLEIDINKITVKTNESIRKKSKYESEIKYLTIMKLKNDKHLKNIYKEAYRIGTLFHLTKHKTDEMEDKIAEVRRKFKGREEFLKKLTQGEVAAGMVLQKKLYSIYEVQALERKELIKNRAICAMSLAELQEPLLQLEDEAERIRSLDKEHSVMLNNIIDQKDLIRRKVGKVKKKLRKKGKKTLDALIETESKRSAIFKDLEATKSKTMIFYAKINELNEELKAKEEEKKSFDQTLEILKNKFITMRFKREHAQTVFDHYMQEKKDCEERIFEEDQRFRVLLAVRQKTLQDTQKIIADSLEENLRLAQEYQQLQITFLKEKDNYFNIYDKQLSLDTSIRDKKQLCQLQRRMHTLWQEHFKLVVLFSQMRLANFQTDSQESIQKILAVQEESSNLMQHILGFFQTLTDGTCENDG
"
exon 201..260
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 261..350
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 351..490
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 491..513
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 514..599
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 600..800
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 801..1021
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 1022..1164
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 1165..1318
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 1319..1414
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 1415..1551
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 1552..1735
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 1736..1798
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 1799..1960
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
variation 1941
/gene="CCDC178"
/gene_synonym="C18orf34"
/replace="g"
/replace="t"
/db_xref="dbSNP:457896"
variation 1943
/gene="CCDC178"
/gene_synonym="C18orf34"
/replace="a"
/replace="g"
/db_xref="dbSNP:466113"
exon 1961..2074
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 2075..2220
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 2221..2380
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 2381..2530
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 2531..2665
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
exon 2666..3355
/gene="CCDC178"
/gene_synonym="C18orf34"
/inference="alignment:Splign:1.39.8"
STS 2936..3113
/gene="CCDC178"
/gene_synonym="C18orf34"
/standard_name="RH92259"
/db_xref="UniSTS:88116"
variation 3053
/gene="CCDC178"
/gene_synonym="C18orf34"
/replace="g"
/replace="t"
/db_xref="dbSNP:1052411"
ORIGIN
tgtctgctcaatcaagtcaaatactgaacaacttcctggcggagaggctgagaattttatacttgcttgctcgaaagcaccccaaataagatgatccacgccaacacctcccctttacaggttttaaaatattcttataactatgactgaaaacaagacagtttcctcttcttccactagagatgatcaaaccaatataggtttaacatgtcaggaagtaaaggctctcagagagaaggcatggtcaaggacaaatgaaggcaatgccatgtctcaaagtttggttctatatggagcctctaaggagaacagtgaaggttttcatgaaagtaaaatgacaaatactgaaggggtgaataaaggcatttactttagctacccatgtcgacgtcacagctgtgccgtagtaaatattccagcaccttgtgtcaacaaaatgatttcacacatccaagatgtggagtccaaaatacaggagcatttgaaaaggtttgaaacttcttttgaagaatggagcagaacttcttccacaaaagacctgaaagaagattggagtgtaactacaccagtgaaagaggtcaaaccaggagaaaagagagatgaaaagtgtccagagttaaagcaggaaatggaaacattgctctcagaggccattcgtctcattaaaagtctagaaactgaccgggcagacgctgaagaagctttaaaacaacagagatcaagaaagaatatgattaacatgaaaattgactcttggtcagtctggaaacttcaagaactcccattggctgtgcagaaagaacatgaggcctatttgagtgatgttatagaattacaatggcatcttgaagataaagctaatcaactacaacattttgaaaaacaaaagacagagttagaagaagcaaatgcaaagattcaagcagacatagactacatgaatgaacatggccctctactggactctaagcagaatcaggaacttcaagatctgaagaaccattataaaaaaaaaatggaggtaatggacctacacagaaaagttaatgaagaacttgaagaagctttagaagcctgtgaaaatgccagattgaaggctcagcaaattaaagaagagattgataaggatatttaccaggatgaaaaaaccatagaggcctacaagagagagatatatcaacttaacagtctatttgatcattactcttcatcagtgataaatgttaatactaatattgaggagaaggaagaggaagtgactgaagcaataagggaaacaaagtcatcaaaaaatgaattacattctctatcaaaaatgctggaagatttgagaagagtttatgaccaactaacctggaagcaaaaaagtcatgaaaatcagtatctggaagcagttaatgatttttatgctgcaaaaaaaacatgggatattgagctttctgatgttgcaaaagatttttcagctatttctttggcatgtacaaaactgacggaagacaataaaaaacttgagattgatattaacaaaataacagtaaaaaccaatgaaagcatacggaaaaaatcaaaatacgaatctgaaataaaatatttgacaataatgaagttaaagaatgataaacatctcaagaacatctataaggaggcttatcgcattggtactcttttccacctaaccaaacacaagacagatgaaatggaagataaaatagcagaagtgagaagaaagttcaagggtagagaagaattcctgaaaaaactcactcaaggtgaagtggctgctggaatggtgcttcagaaaaaactatattccatttacgaagtccaggcacttgagcggaaagagcttataaaaaatagagcaatatgtgccatgtcactggcagaactacaggaacctctgcttcaactagaagatgaagctgaaagaatcagaagtctcgacaaagaacattctgttatgcttaataatataattgatcagaaagatcttattagaagaaaggtgggaaaagtaaagaaaaaattacgaaaaaaggggaagaaaacccttgatgcattaatagaaactgagagtaaacgctcagcaatttttaaagacctagaagcaactaaaagtaagacaatgattttttatgcaaaaataaatgaattgaatgaggaattaaaagcaaaagaagaagaaaagaaaagttttgatcagacacttgaaatattaaagaacaaatttataactatgagatttaaaagggaacatgcacaaactgtgtttgatcattatatgcaagagaaaaaagactgtgaagagagaatctttgaggaagatcagagatttagagtgctccttgctgtaagacaaaaaactcttcaagatacccaaaaaataatagctgattcacttgaagaaaatctgcgtttagctcaagagtatcaacagctacagattacattcttaaaagaaaaggacaattatttcaatatatatgataaacagctatcacttgatacttcaattagagataagaaacagctctgtcagctgcagagaaggatgcacacactgtggcaggagcacttcaaactggtggtcctcttcagccagatgaggctggccaacttccagacagactctcaggagagtattcagaaaatattagctgtgcaggaggaatcttcaaatttaatgcaacacatcttaggtttcttccagactttgacagatggcacatgcgaaaacgatggttaagcaaacaaccaatgtatcttggatgctgaaataaaagacaagaaaagtcacacagttcagataacagtgtaattggacattcacctgtttgccatttcacacttccatgaacgaaaaactcactcacctcccagcatgctttgccactcttttactcacagcaaatccataacaatgaaacaggtgactttcatgctgctgtcaggaacgatctaatttcagctctgggtgactgattgcaattggctttgcctcatctgataattaatctatgtcaccattaattggaagagagaataattactggcggtgttgacagtgactgttcgcttccccagatttccctatcgtcttggcccaaataaaggctttgccattcagtacttaaagtttgtgtaaactgtaacaatatctatgcccatgtgacactttgagacactctgtctaatgtacttttgtttttgtgtttaccagtcttttttagctcactgagagctgtctctctcaatcactcctcaatgttctatcttaattttgtggaagtttaaagttttcaatgagctggagatgaatgattaatgaataaatttaaatgcttcattttgtccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
//
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@meso_cacase at
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