2024-03-29 00:02:45, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001099678 7683 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens leucine rich repeat containing 58 (LRRC58), mRNA. ACCESSION NM_001099678 XM_057296 XM_938862 VERSION NM_001099678.1 GI:153792304 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 7683) AUTHORS Benjamin,D.J., Cesarini,D., van der Loos,M.J., Dawes,C.T., Koellinger,P.D., Magnusson,P.K., Chabris,C.F., Conley,D., Laibson,D., Johannesson,M. and Visscher,P.M. TITLE The genetic architecture of economic and political preferences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 109 (21), 8026-8031 (2012) PUBMED 22566634 REFERENCE 2 (bases 1 to 7683) AUTHORS Lingappa,J.R., Petrovski,S., Kahle,E., Fellay,J., Shianna,K., McElrath,M.J., Thomas,K.K., Baeten,J.M., Celum,C., Wald,A., de Bruyn,G., Mullins,J.I., Nakku-Joloba,E., Farquhar,C., Essex,M., Donnell,D., Kiarie,J., Haynes,B. and Goldstein,D. CONSRTM Partners in Prevention HSV/HIV Transmission Study Team TITLE Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure JOURNAL PLoS ONE 6 (12), E28632 (2011) PUBMED 22174851 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC013757.1 and AC063952.15. On or before Jul 26, 2007 this sequence version replaced gi:113414628, gi:113415191. ##Evidence-Data-START## Transcript exon combination :: BC013757.1 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025081, ERS025083 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-31 BC013757.1 1-31 32-32 AC063952.15 83817-83817 c 33-1780 BC013757.1 33-1780 1781-7683 AC063952.15 59238-65140 c FEATURES Location/Qualifiers source 1..7683 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="3" /map="3q13.33" gene 1..7683 /gene="LRRC58" /note="leucine rich repeat containing 58" /db_xref="GeneID:116064" /db_xref="HGNC:26968" exon 1..596 /gene="LRRC58" /inference="alignment:Splign:1.39.8" CDS 97..1212 /gene="LRRC58" /codon_start=1 /product="leucine-rich repeat-containing protein 58" /protein_id="NP_001093148.1" /db_xref="GI:153792305" /db_xref="CCDS:CCDS46892.1" /db_xref="GeneID:116064" /db_xref="HGNC:26968" /translation="
MEEAGAAVVTAGEAELNWSRLSVSTETLESELEARGEERRGAREALLRLLLPHNRLVSLPRALGSGFPHLQLLDVSGNALTALGPELLALRGLRTLLAKNNRLGGPSALPKGLAQSPLCRSLQVLNLSGNCFQEVPASLLELRALQTLSLGGNQLQSIPAEIENLQSLECLYLGGNFIKEIPPELGNLPSLNYLVLCDNKIQSIPPQLSQLHSLRSLSLHNNLLTYLPREILNLIHLEELSLRGNPLVVRFVRDLTYDPPTLLELAARTIKIRNISYTPYDLPGNLLRYLGSASNCPNPKCGGVYFDCCVRQIKFVDFCGKYRLPLMHYLCSPECSSPCSSASHSSTSQSESDSEDEASVAARRMQKVLLG
" misc_feature 166..168 /gene="LRRC58" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (Q96CX6.2); phosphorylation site" misc_feature 229..294 /gene="LRRC58" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q96CX6.2); Region: LRR 1" misc_feature 301..369 /gene="LRRC58" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q96CX6.2); Region: LRR 2" misc_feature 370..435 /gene="LRRC58" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q96CX6.2); Region: LRR 3" misc_feature 457..576 /gene="LRRC58" /note="Leucine Rich repeats (2 copies); Region: LRR_4; pfam12799" /db_xref="CDD:205079" misc_feature 457..525 /gene="LRRC58" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q96CX6.2); Region: LRR 4" misc_feature 526..594 /gene="LRRC58" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q96CX6.2); Region: LRR 5" misc_feature 529..699 /gene="LRRC58" /note="Leucine rich repeat; Region: LRR_8; pfam13855" /db_xref="CDD:206026" misc_feature 595..663 /gene="LRRC58" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q96CX6.2); Region: LRR 6" misc_feature 664..729 /gene="LRRC58" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q96CX6.2); Region: LRR 7" misc_feature 733..798 /gene="LRRC58" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q96CX6.2); Region: LRR 8" misc_feature 802..864 /gene="LRRC58" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q96CX6.2); Region: LRR 9" exon 597..725 /gene="LRRC58" /inference="alignment:Splign:1.39.8" exon 726..1003 /gene="LRRC58" /inference="alignment:Splign:1.39.8" exon 1004..7683 /gene="LRRC58" /inference="alignment:Splign:1.39.8" variation 1967 /gene="LRRC58" /replace="c" /replace="t" /db_xref="dbSNP:2638597" variation 3879 /gene="LRRC58" /replace="a" /replace="g" /db_xref="dbSNP:787206" STS 4562..5974 /gene="LRRC58" /standard_name="D10S512" /db_xref="UniSTS:64760" STS 4881..4983 /gene="LRRC58" /standard_name="D11S3114" /db_xref="UniSTS:152207" STS 4965..6140 /gene="LRRC58" /standard_name="D8S2279" /db_xref="UniSTS:473907" STS 4965..5057 /gene="LRRC58" /standard_name="D8S2279" /db_xref="UniSTS:473907" STS 5019..6171 /gene="LRRC58" /standard_name="D1S1423" /db_xref="UniSTS:149619" variation 5164 /gene="LRRC58" /replace="" /replace="a" /db_xref="dbSNP:66631816" variation 5293 /gene="LRRC58" /replace="a" /replace="g" /db_xref="dbSNP:11554681" STS 6102..6171 /gene="LRRC58" /standard_name="D1S1423" /db_xref="UniSTS:149619" variation 7423 /gene="LRRC58" /replace="a" /replace="g" /db_xref="dbSNP:10511400" ORIGIN
ctcggttcaggttccggggcgccgcagagctcccggcctctggaccgcgcgcggcgctctggggaatccggcgccacgcgccgtgcggtggccaggatggaggaggccggagcagcggtggtcacggccggggaggccgaactgaactggtcccgcctcagcgtgtccaccgagacgctggagtctgagctggaggcgcggggggaggagcggcgcggggcgcgggaggcgctgctgcggctgctgctgcctcacaaccgtctggtgtcgctgccacgggcgctgggcagcggcttcccgcacctccagctgctggacgtgagcggcaacgcgttgaccgcgctcgggccggagctgctcgctctgcgcggcctgcgcacgctgctggccaagaacaaccggctcggcgggcccagtgcgctgcccaagggcctggcccagtcgccgctctgccgcagcctccaggtgctcaacctcagcggcaactgtttccaggaggtgcctgcctcgctcttagagctgcgcgcgctgcagaccctgagcctgggcggcaaccaactgcagagcatcccggctgagatcgagaacttgcagagtttagagtgtttatatcttggaggaaatttcattaaagaaatcccaccagaattaggaaatctgccttctctgaattatttggtattatgtgacaacaaaatccaaagcatacctcctcaactttcacagttacattcacttcgttccctaagtcttcacaataacttgctgacatatctgcctcgagagatcctcaaccttattcatttggaagagttgagtttacgaggaaatccattggttgttcgttttgttagagatttaacctatgatcctccaactctcctggaattagctgcacggaccattaagattcgaaatatttcctacactccctatgatcttcctggaaatcttcttagatacttgggttcagccagcaattgcccaaacccaaagtgtggaggagtctactttgactgctgtgtcagacaaattaaatttgtggacttctgtgggaagtatcgcctcccactgatgcactacttgtgttcaccagaatgttcttccccttgcagttctgcctctcacagctccacttcccagagtgaatctgactcagaagatgaagctagtgttgctgcacgcagaatgcagaaagttcttcttggttgaacaggagtgcacagtgttgtgaaatacttaaaaaactgagcaaaatggttagacaagaaaatagagcttgaagttcactagaaatcttatcttcatcttaagtgttcatcaaagagtctgggatgatataaaacattttgtgtttcatctacccattcagcaagaatgagtccagtcccatgtttagattattttaacataatttgtgaatgatagtttcacatttggctgatggtttgcagttttcactcaagttttgcatgaatcacaaagcagaatggtaccttttgaagagcagttctgcaataagtcatgagtagtataacttttggacattgagatggagaaagtgagaaattatcaaagctataattgccagagttgcccttgggtttaggtagaacactgtataccatatatactatataccatatatactatatataccatatatattatatgccataaacaggattaaccctcccttttctaattgcctgtatgtctagattacagaactattcaaagaagctcacagatggttacatgggacaaacctttctgacaaactaactggtaaagtaaggcatataacatttacatgagatattaaaactttttcattattatcctttgttctatatgattgctattaaccttatgtaatctagcaatgactgttatagtgccttaatccagcaaggatataaaaatgtattcaagaagtaatgccagagcaacctataacctgacataccatgcagaacattgtaaaatattctttaacagaactaggtaaataactgtgtatctaatatccgatctcatggccctcttaacatttttttgtttaaatgtgcactcatcccttataagcacattacttttacacttaatggtaggccacaatcttcatcaatctgttcatcataagacagagtaagaatttttaacagaaaattctaaaagagatagaagctaggaaagcttctttatatcttgcattaaatgggtagggaaaaaatatgactctcacccatgtcatgtactggaccatctttctctactttttaaagaaaaactaatacaactagaaaaacatcacaacaagccaaataaaaatggagaaaaggagtcattgtccttatacctaatggaacagtttccagaactactttaactatggaagcatttttgaaaataaagtattaataaaatagaaaaaaattattaaatatattgtatccttaatgtatagcaggaaaatagtttcacaaattaattgctattagaaattaccaaatttttattaagtactttaatatgcaatacaaattgaataatagtacaactataagttgatataaagtaagtgcttactggtaatcattaaataactaataacatgacttgttggttaatgttaaacctacagtaagaaatgttatacagatcagataggcattagaacatcaggtgtaccttttctgatttctggcattcatggcacaccatttcttaaaagcagattgttgtataataacatatacatgtattagggtttttttcatatatattttttattttagaagaaactagcataattcagggtttatgtgtttatttgtatattaattcatgaaacatgagagtttcatgaactgcagatgtgaaacgctgctatagaatgaatcccttcacctttaccttgttataatgtagtaagattttgttttccttttgactcagaaattttctatgtctatagaggtaatctaatatgttcctactgcctagaagagtaatacataggtgattatatcataaaatagaggtataaagtctttgcttacttctccatgtgggccacagcaagctgcagactgtacagttatgaaaggtaaagatgacttaggctgtgcctaagtgacaaatgtaaaatgttttgtaaataagtgacttacctaagatacataagatattttcatagaaaataatgtattcatagtaaaatactcaaattgataggaccaattttttctggcctaaatgcttatgcctacttcctaatcaattaccagcttgacttaagtaactgcttgagtagtcttctaagagttagtcttcgtaaaataaatggataggtatgtaaatatataatcttacataccctttccagcttcctagaaaggtctactgcttcatcttttacagatgtaaataggtccaaccagagacagtttctggcctttgcatataagaatatagatgtataccacagtattatttcaacaaaatgttatggttctatgtatagttgaaaactctatgatcagcatacaactgtcttttggtaatttttaatgaagtctacatttagccgtcggttttatctttcttaaatctttgacctaaacttttgtaagagcagctaataatttctaagattttccctgtttctttttcctacctttccttttctcataactgattggagaaattaatcagaagtcaaatacaagggacttcataatctagaaaccagataatcagctcccaagtcatgtagctaactatgcatttaaaataagtctgtctctttagttcttaagtcatatatttgtttgttaattacagtaaatgaactttaattggggtttttaaaagacagaattagcgaagtctaatttttataatgaaataagtttttgatattgctctacttggacgattttagtgaccaaaactatggataaaactgcctaagcataacattaatatatttagaatggcattcttcagtgctagtatttgaaattggaattagtacattgtgcattcttagtagtctttatccctagaatcaattctctcagcatcaccaaactgaattggtgaaatagtgctaagattctgggcaataggaagattagtgaatatgatacattgattccagggtgccagggattggctgacattaaggaccagctggctatggtcctcaggctacggtcctcagtattctagtatttgagtagtggaggtaaatccaaaggcgactggttatattttacttctaaatgtgtgctgaagtgtctcttgttcaaaaattcttgatatttagagcttcaagttaccacatttaaaagtaaagacttggcacggtggcacacacctataatcttagcactttgggaggccgaagtggatggatcatatgcagtcaggaatttgagaccagcctggccaacatggtgaaacctcatctttactaaaaatacaaaaattagccgggcgttgtgacgcacacccatagtcccagctaactccggaggctaagacaagagaatcacttgaacttgggagacagaggttgcagtaatctgagatcactccgctgcactccagcctgagtgagagtgagactgtgtctcaaacaaacaaacaaaaaacaaacaaaaaaatttgcattgtaaattgtacctcaaatttgagcagtttttgtgtttgtgtaaattaaagtaaaaagcagtccacaataatgttttgtaatactgcacaccagttctaccagattttgtaactatcagatttaaatgaaaaaagagaaggaagaggctgattgctggagtgttaaagaaatcttggccgggcgtggtggctcacgcttgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaaaattagccgggcgtgatggcgggcgcctgtagtcccagctactcgggaggctgaggcaagagaatggcgtgaacccgggaggcggagcttgcagtgagccgagattgcgccactgcactcccgcctgggccacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaagaaatctttagaagccacagggctagaagagaagtcaccaaacacctagggacagtcctaggcctagaaagccctttaaagtaatagtgaattgttttaaaattaagttattgagtggcctactgactaccatccaaaaacctttatcaccaaatttgttcagtgtttgctattgggagattgtccatatccctccgtaattaagggccagcaagtaatacgatcttcttacagccaaccttgctcttcccaaagggagaaagtaatacatcattaacctggaatttgtgatataacaggtagccttggttaatgtttaccttttcactatgtaaaaaagaaaaaacacacagcaaatagtgcaaataaaatttggtcttttaaagcattttagcagtagctatgtaaaaaaagttaatggttattattcctaaattttcataagacccttggtagacaaaactatcggttatattatgtatatatgaggttagttaagctgcatttagttaggaacatttaatttttacctaaatgatccttttttcatccagaggtagagattttattgtcattatgaatgttactccccatttagtccaaaatagtgagcttttaagttgtgccaggtacttaacaatagtaaaagctattgtatagatttttattcaatgtgacctataatacatttctgattccttctgtattgaatgtcccagtttccatattaagtgctatgccctgtataacattaatgaatttaatagtgtacaattttgggccaggcatggtggctcacgccagtaatcctggcactttgggaggcagaggcaggcagatcacctgaggtcaggggttcgagatcagcctggccaacatggcaaaatcacatctctactaaaaatacaaaaattagccaggcgtggtggtgcatgcctgtagtcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagatcatgccattgcactccagcctgggagacagagcaagactctatctcaaaaataaaaataaaaaaaaaattgcgtgcaattttgtattttcatagtcgtatctttttaaaggtatcatgatttcagttgtggtcaggaagtatgtgccttaaatcctctactctagacccaaagtttggagagctatattatttaataagttgtttgtgacagccttgttacctttttcatttgatttgagggagaaagactgtgatcctgacagattccttctcataaaatggcctaatgtgtatcagtctaggacttctggggagggaacctctaccatgcattctgtcccaggatgtcaaagtcataagaatcagggtcccctgaaataaaatcactgaaaagatatgttctgttatatattatttaaaaaatttatctggtgccaccaaagaatgacagcagtttctaaccaacttcatatttatagcatcttatgaagatattgtaaggcttagcatattttgccactggttttctttgtaatataggttgaaagtgagacatgtttgaatacttttgtatgtaaatatctcccattctttttctatctcttcttggtctatatttactaagaattgatatttaaaaaacagttcactaatgaactctacatattattgaacactcacagggcaatattgatttgggtgctactagacttttacctaacattagtctttctcaatagttgttgtaaaggatagtattcaatccagtaaatattaaagtgtattagtttaatgaaggttatttatatactgtcataccacaaacctatggtggaaagaacatctgcattcaccagaatgtacttgttcctttggctgtgaataaattggataagacttttttattgtaagttccagctgttggaagatacggggataagattgacattgctgttgcagtattgcaaaaacatgactaaattggttaattatgtctaccgcttatgtttaagagaatcctttcactaacttaaattgttaacattgttgtgatattgagaaagaatattaacctaaacagtcactttacaacaatcatgtaaagacgtgtgcctgcagttgaggttttttgcatttctgagcctgctttgtattcatgagaaacaaaaacataatgggagaaaagttttagataagcagcattgtaagtttttgtaaagtttgggatgtcaaagtattaacgaagggtactgaaaacatacttttacttgggtcaaattactttttatgatctgatttcttaattttctgtatttgaaatcttgcaaattaggaatatctacatctatagataaataagtaaaacttaatggtagaaataagtgtaattcagcaacatgattcaacaatttttatatttaggataagttattgtttattatattaatatcaaatttatatattgccttgtaatgctaaatgctcttaaaagaatatatgggc
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