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2024-03-28 20:59:13, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_001098801            4392 bp    mRNA    linear   PRI 17-APR-2013
DEFINITION  Homo sapiens family with sequence similarity 210, member A
            (FAM210A), transcript variant 1, mRNA.
ACCESSION   NM_001098801
VERSION     NM_001098801.1  GI:149408152
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4392)
  AUTHORS   Estrada,K., Styrkarsdottir,U., Evangelou,E., Hsu,Y.H., Duncan,E.L.,
            Ntzani,E.E., Oei,L., Albagha,O.M., Amin,N., Kemp,J.P., Koller,D.L.,
            Li,G., Liu,C.T., Minster,R.L., Moayyeri,A., Vandenput,L.,
            Willner,D., Xiao,S.M., Yerges-Armstrong,L.M., Zheng,H.F.,
            Alonso,N., Eriksson,J., Kammerer,C.M., Kaptoge,S.K., Leo,P.J.,
            Thorleifsson,G., Wilson,S.G., Wilson,J.F., Aalto,V., Alen,M.,
            Aragaki,A.K., Aspelund,T., Center,J.R., Dailiana,Z., Duggan,D.J.,
            Garcia,M., Garcia-Giralt,N., Giroux,S., Hallmans,G., Hocking,L.J.,
            Husted,L.B., Jameson,K.A., Khusainova,R., Kim,G.S., Kooperberg,C.,
            Koromila,T., Kruk,M., Laaksonen,M., Lacroix,A.Z., Lee,S.H.,
            Leung,P.C., Lewis,J.R., Masi,L., Mencej-Bedrac,S., Nguyen,T.V.,
            Nogues,X., Patel,M.S., Prezelj,J., Rose,L.M., Scollen,S.,
            Siggeirsdottir,K., Smith,A.V., Svensson,O., Trompet,S., Trummer,O.,
            van Schoor,N.M., Woo,J., Zhu,K., Balcells,S., Brandi,M.L.,
            Buckley,B.M., Cheng,S., Christiansen,C., Cooper,C., Dedoussis,G.,
            Ford,I., Frost,M., Goltzman,D., Gonzalez-Macias,J., Kahonen,M.,
            Karlsson,M., Khusnutdinova,E., Koh,J.M., Kollia,P., Langdahl,B.L.,
            Leslie,W.D., Lips,P., Ljunggren,O., Lorenc,R.S., Marc,J.,
            Mellstrom,D., Obermayer-Pietsch,B., Olmos,J.M.,
            Pettersson-Kymmer,U., Reid,D.M., Riancho,J.A., Ridker,P.M.,
            Rousseau,F., Slagboom,P.E., Tang,N.L., Urreizti,R., Van Hul,W.,
            Viikari,J., Zarrabeitia,M.T., Aulchenko,Y.S.,
            Castano-Betancourt,M., Grundberg,E., Herrera,L., Ingvarsson,T.,
            Johannsdottir,H., Kwan,T., Li,R., Luben,R., Medina-Gomez,C.,
            Palsson,S.T., Reppe,S., Rotter,J.I., Sigurdsson,G., van Meurs,J.B.,
            Verlaan,D., Williams,F.M., Wood,A.R., Zhou,Y., Gautvik,K.M.,
            Pastinen,T., Raychaudhuri,S., Cauley,J.A., Chasman,D.I.,
            Clark,G.R., Cummings,S.R., Danoy,P., Dennison,E.M., Eastell,R.,
            Eisman,J.A., Gudnason,V., Hofman,A., Jackson,R.D., Jones,G.,
            Jukema,J.W., Khaw,K.T., Lehtimaki,T., Liu,Y., Lorentzon,M.,
            McCloskey,E., Mitchell,B.D., Nandakumar,K., Nicholson,G.C.,
            Oostra,B.A., Peacock,M., Pols,H.A., Prince,R.L., Raitakari,O.,
            Reid,I.R., Robbins,J., Sambrook,P.N., Sham,P.C., Shuldiner,A.R.,
            Tylavsky,F.A., van Duijn,C.M., Wareham,N.J., Cupples,L.A.,
            Econs,M.J., Evans,D.M., Harris,T.B., Kung,A.W., Psaty,B.M.,
            Reeve,J., Spector,T.D., Streeten,E.A., Zillikens,M.C.,
            Thorsteinsdottir,U., Ohlsson,C., Karasik,D., Richards,J.B.,
            Brown,M.A., Stefansson,K., Uitterlinden,A.G., Ralston,S.H.,
            Ioannidis,J.P., Kiel,D.P. and Rivadeneira,F.
  TITLE     Genome-wide meta-analysis identifies 56 bone mineral density loci
            and reveals 14 loci associated with risk of fracture
  JOURNAL   Nat. Genet. 44 (5), 491-501 (2012)
   PUBMED   22504420
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4392)
  AUTHORS   Hendrickson,S.L., Lautenberger,J.A., Chinn,L.W., Malasky,M.,
            Sezgin,E., Kingsley,L.A., Goedert,J.J., Kirk,G.D., Gomperts,E.D.,
            Buchbinder,S.P., Troyer,J.L. and O'Brien,S.J.
  TITLE     Genetic variants in nuclear-encoded mitochondrial genes influence
            AIDS progression
  JOURNAL   PLoS ONE 5 (9), E12862 (2010)
   PUBMED   20877624
  REMARK    GeneRIF: Observational study of gene-disease association. (HuGE
            Navigator)
            Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DA573992.1, DA560663.1, BU189118.1, AP001010.4 and AA602175.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Both variants 1 and 2 encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: AK055618.1 [ECO:0000331]
            RNAseq introns       :: mixed/partial sample support ERS025084,
                                    ERS025088 [ECO:0000350]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-70                DA573992.1         1-70
            71-646              DA560663.1         1-576
            647-1135            BU189118.1         94-582
            1136-4151           AP001010.4         168773-171788       c
            4152-4392           AA602175.1         1-241               c
FEATURES             Location/Qualifiers
     source          1..4392
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="18"
                     /map="18p11.21"
     gene            1..4392
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /note="family with sequence similarity 210, member A"
                     /db_xref="GeneID:125228"
                     /db_xref="HGNC:28346"
     exon            1..264
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /inference="alignment:Splign:1.39.8"
     exon            265..404
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /inference="alignment:Splign:1.39.8"
     exon            405..905
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /inference="alignment:Splign:1.39.8"
     misc_feature    409..411
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /note="upstream in-frame stop codon"
     CDS             433..1251
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /note="uncharacterized protein C18orf19"
                     /codon_start=1
                     /product="protein FAM210A"
                     /protein_id="NP_001092271.1"
                     /db_xref="GI:149408153"
                     /db_xref="CCDS:CCDS11866.1"
                     /db_xref="GeneID:125228"
                     /db_xref="HGNC:28346"
                     /translation="
MQWNVPRTVSRLARRTCLEPHNAGLFGHCQNVKGPLLLYNAESKVVLVQGPQKQWLHLSAAQCVAKERRPLDAHPPQPGVLRHKQGKQHVSFRRVFSSSATAQGTPEKKEEPDPLQDKSISLYQRFKKTFRQYGKVLIPVHLITSGVWFGTFYYAALKGVNVVPFLELIGLPDSVVSILKNSQSGNALTAYALFKIATPARYTVTLGGTSVTVKYLRSHGYMSTPPPVKEYLQDRMEETKELITEKMEETKDRLTEKLQETKEKVSFKKKVE
"
     misc_feature    802..1062
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /note="Protein of unknown function (DUF1279); Region:
                     DUF1279; pfam06916"
                     /db_xref="CDD:191640"
     misc_feature    838..900
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /inference="non-experimental evidence, no additional
                     details recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q96ND0.2);
                     transmembrane region"
     variation       547
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:35493157"
     variation       759
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:34798758"
     exon            906..1017
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /inference="alignment:Splign:1.39.8"
     variation       931
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2847146"
     exon            1018..4384
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /inference="alignment:Splign:1.39.8"
     variation       1128
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:35023957"
     STS             1693..1868
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /standard_name="RH80402"
                     /db_xref="UniSTS:90298"
     STS             1745..1941
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /standard_name="STS-T67088"
                     /db_xref="UniSTS:82091"
     STS             1922..2012
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /standard_name="D18S1228"
                     /db_xref="UniSTS:11696"
     polyA_signal    2035..2040
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
     polyA_site      2065
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
     STS             2393..2582
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /standard_name="ECD04345"
                     /db_xref="UniSTS:285422"
     STS             2406..4040
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /standard_name="D1S1423"
                     /db_xref="UniSTS:149619"
     STS             2406..2592
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /standard_name="D1S1423"
                     /db_xref="UniSTS:149619"
     STS             3038..3160
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /standard_name="RH65191"
                     /db_xref="UniSTS:13038"
     STS             3043..3194
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /standard_name="SHGC-53804"
                     /db_xref="UniSTS:28526"
     variation       4128
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:1047427"
     STS             4224..4352
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
                     /standard_name="SHGC-31363"
                     /db_xref="UniSTS:35822"
     polyA_signal    4360..4365
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
     polyA_site      4384
                     /gene="FAM210A"
                     /gene_synonym="C18orf19; HsT2329"
ORIGIN      
aactacgagtcccgacgtgccgcgcgcggcatgcagaagcttcactgagcgggcactggaggtcgcgagcacgttgctagtgggcgcggctggcggggccgggggcggcagggggctagcgtccggctgagcccggcgggttcctgcacgcggacccacgctttgtcgggctgctctgctgagtgacaccgccgtggcatccgaggagctgtggtccagcctgcgcggcgggaagcggcggcggcggctccagcgtcctaagagaagaaagaatttgactgatgggcgtaaggaagaaaaagagaccgaggcaagtttcagagaagtagtggaagatttttcaaaaaagctgtagaacaagaaagaaagtatgcttgggaaagacccaagcgggcatgtgaaggaagctgaaacctatcaacactcttcaaaatgcaatggaatgtaccacggactgtatctcgactggcacgcaggacatgcttggaaccacataatgctggtctctttggacactgtcaaaatgtaaagggacctttacttttatacaatgctgaatccaaagtggttttggtacaaggccctcaaaaacaatggttgcatttatctgctgcccagtgtgttgcaaaggaaaggaggccattggatgctcatccaccccaaccaggagtccttcgccataagcaagggaagcaacatgtttcattcaggagggttttttcatccagtgccacagctcagggaactccggaaaaaaaggaagagcctgatcctttgcaagacaaatctattagtctttatcaacgattcaagaagacatttagacagtatggaaaagttctgattccagtgcatctaataacttctggtgtttggtttggaacattttattatgcagccttgaaaggagtgaatgtcgttccttttctagaactcattgggttacctgacagtgtggtaagcatcctgaaaaactcccagagtggaaatgccctcacagcatatgccttgtttaagattgcaacacctgctcggtataccgtgactttgggaggaacatctgtcactgtgaagtatctgcgcagtcatggctacatgtccacgccgccacccgtcaaggagtatctgcaggacaggatggaagagacaaaggagcttatcacagagaaaatggaagaaacaaaagatagactcactgaaaagttacaagaaaccaaagaaaaagtttcctttaagaaaaaagtggaataaggtgccttatatagcagtatagaaaattcctgcactttaaccctttggaaactatgggcaaagatacatgtgtctgattatttttttggttagttgccgaaatatactagttctctgagggttaaagaagtaaaatacctttttaaagttaaatatcactagaaaaatcagtgttattacaagggaagaaatgaacccagtttaagaatttgccatcagtagcagtattaagcagtggttaatgtcttagaagtcagacttctttttcaaggtcttcagaaccacacttgatttctgttttgttgcagctgtaattgacacatactaggcagctgactccttgaatatccagtgtgacccataaaatagtctgttaataccggatcttaatttttatgttattcattaagattttaactatattcagtacgtaatttggagacaaactagcatcatcaaaactgcctgtaaataaggtgtttagtctttctataaaaacagaatagagcagttacctaccagttaaaatatcttatatgaagaaaatagaataaagatccagtcatatatgtaaataagatgtactgattgtacgtaaatgaaaaatggaccctttaaaaattatttttacctgaagcttgtcataatttttttaaagcaaatatatatatggtgatggtacttttcaaagtgtgtattagtggtgatcacctcaaacataaacctctgttgtgaatcatttgtgtccttttcaactgtctttcagaggaaaggtaaaaaatcattaaaccttaaattcattgttaaaatcaaatatttgtcagcagtaactcaagctcatggttctcaagcagaaaaaggtttgggagactaaaaatggagtcaggttttcatggagactgctaactccttggggtagacatgggccttgcctcagcaaaccagtgcaatttcccaatgtcttagtttcagaattcatgctgatttcattatggagtaaagttttaaattgtggctgctgctttttgtcttacattgaagggaaatatccttgtttgagcattctacttgattttttttttttttttttttttttttgagacggagcctccctctctctctcccagactggagtgcaatggtacaatctcggctcactgcatcctctgcctcccaggttcaagtgatcctcccgcctcagctttccaagtagctgggagtataagcgtgtgccaccacactcagctaatttttgtatttttagtggaggtggagtttcaccatgttagccaggctagtctccaactcctgacctcagcctcccgagtagctgggactacaggcgcccaccaccacgcccagctaatttttttgtatttttagtagagatggggtttcaccatcttaacaaagctatcattaaatcatttgcttgtaatgaaattcagccgttgtcagctgtgagcgttgcggggctggtggggtgtgtttgagtatgtaagtgtctatttcctgtgctctaacagtgactatttcagttctaacccttcaattgctaattggatgagggaatggcctcttagattgtccttgttttgacttatctgctaaggcgagagaatgtctgggtttgccacacagtcccgcagggacccctgctctttgccaggatttttatatcaagtacttagtttggccaaatttagagtatagtttaaaggggaaaaaaagtttgtatttgatgagtctaattactatattagaatgctttttaaatgaatatgctgtgattggaatctcttcttgggggccggggagagtgctgagagatgcagctgtgtctctgctctctgcagtcttgggcaggcagcaccgctgtctcctgatacagagggttgaatgcactgcttcacattgatgccacattttcaaatctaaacatgattaacatgttttttaagtatttatcaaataattcacatttttgcaggtttaagtgctgttttttaagatattaaacatgttccttgtttcttttttctttttaaccactggagactatgtgaaaatcttgtgttatatggaatttttctaaaacaatttccttttacttttcatgttgcatattttccagtggggataaattggaggttcttattactaataatcctgaaactaaaatttgcttttcctgcatagacatcttttgttagtccatttgagttttgttgccatccagtttcatgatcatgttgtgttagtctaatagacaatgagttactgcttgaatgatatgaaattctctagtaaaaaatgctctgaagatgtgagaagctctgttgtattacttggcaccaggaatgttacaaaaatgttgttgctagcatattgctaacctagtccttaagtttcagggattcctgtaatatgttgagtttggagtattaatagcaggctaacagaatacagtaccaatatgccaagttaaataattgagaatatatacagtatagtttgctatgtataatagacctcatttcatttacagtacacctcacacttgggattaattcacctataacctctgtgaactgcgagtgctcggcagaagcagccctgtgtcttacatgtctacatttatatttatatttatatttatttttttgagacagagtctcactctgtcacccaggctagagtgcagtggcatgatcatagctcacttgcgtcttgaactcctggctcaagtgatcctcccacctcagcctgctgagtagctgggactacaggtgcacaccaccatgcctggctaaaggcatgtctgcatttatgcgaggtgtgttgaccgggtggggagggagctaggactgagattcgcctgtgtaaaatgcacaaaaagggtttgctaagcaaattgatatttgaaatgaaagatggattaggtgagagacttagtttattcaggaataagagcaaaaccaaccacatcaaaaaatgtatttcactgagacagccttttgtacatacagcagggtgctgtttacagatttcaagaaaggagaaaaagaatgcttatactgagattacctacctcccagtagtgaaaataataaatttatcccttgaaatataaaaaaaaaa
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:125228 -> Cellular component: GO:0005739 [mitochondrion] evidence: IEA
            GeneID:125228 -> Cellular component: GO:0016021 [integral to membrane] evidence: IEA

by @meso_cacase at DBCLS
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