2024-03-28 20:59:13, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001098801 4392 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens family with sequence similarity 210, member A (FAM210A), transcript variant 1, mRNA. ACCESSION NM_001098801 VERSION NM_001098801.1 GI:149408152 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4392) AUTHORS Estrada,K., Styrkarsdottir,U., Evangelou,E., Hsu,Y.H., Duncan,E.L., Ntzani,E.E., Oei,L., Albagha,O.M., Amin,N., Kemp,J.P., Koller,D.L., Li,G., Liu,C.T., Minster,R.L., Moayyeri,A., Vandenput,L., Willner,D., Xiao,S.M., Yerges-Armstrong,L.M., Zheng,H.F., Alonso,N., Eriksson,J., Kammerer,C.M., Kaptoge,S.K., Leo,P.J., Thorleifsson,G., Wilson,S.G., Wilson,J.F., Aalto,V., Alen,M., Aragaki,A.K., Aspelund,T., Center,J.R., Dailiana,Z., Duggan,D.J., Garcia,M., Garcia-Giralt,N., Giroux,S., Hallmans,G., Hocking,L.J., Husted,L.B., Jameson,K.A., Khusainova,R., Kim,G.S., Kooperberg,C., Koromila,T., Kruk,M., Laaksonen,M., Lacroix,A.Z., Lee,S.H., Leung,P.C., Lewis,J.R., Masi,L., Mencej-Bedrac,S., Nguyen,T.V., Nogues,X., Patel,M.S., Prezelj,J., Rose,L.M., Scollen,S., Siggeirsdottir,K., Smith,A.V., Svensson,O., Trompet,S., Trummer,O., van Schoor,N.M., Woo,J., Zhu,K., Balcells,S., Brandi,M.L., Buckley,B.M., Cheng,S., Christiansen,C., Cooper,C., Dedoussis,G., Ford,I., Frost,M., Goltzman,D., Gonzalez-Macias,J., Kahonen,M., Karlsson,M., Khusnutdinova,E., Koh,J.M., Kollia,P., Langdahl,B.L., Leslie,W.D., Lips,P., Ljunggren,O., Lorenc,R.S., Marc,J., Mellstrom,D., Obermayer-Pietsch,B., Olmos,J.M., Pettersson-Kymmer,U., Reid,D.M., Riancho,J.A., Ridker,P.M., Rousseau,F., Slagboom,P.E., Tang,N.L., Urreizti,R., Van Hul,W., Viikari,J., Zarrabeitia,M.T., Aulchenko,Y.S., Castano-Betancourt,M., Grundberg,E., Herrera,L., Ingvarsson,T., Johannsdottir,H., Kwan,T., Li,R., Luben,R., Medina-Gomez,C., Palsson,S.T., Reppe,S., Rotter,J.I., Sigurdsson,G., van Meurs,J.B., Verlaan,D., Williams,F.M., Wood,A.R., Zhou,Y., Gautvik,K.M., Pastinen,T., Raychaudhuri,S., Cauley,J.A., Chasman,D.I., Clark,G.R., Cummings,S.R., Danoy,P., Dennison,E.M., Eastell,R., Eisman,J.A., Gudnason,V., Hofman,A., Jackson,R.D., Jones,G., Jukema,J.W., Khaw,K.T., Lehtimaki,T., Liu,Y., Lorentzon,M., McCloskey,E., Mitchell,B.D., Nandakumar,K., Nicholson,G.C., Oostra,B.A., Peacock,M., Pols,H.A., Prince,R.L., Raitakari,O., Reid,I.R., Robbins,J., Sambrook,P.N., Sham,P.C., Shuldiner,A.R., Tylavsky,F.A., van Duijn,C.M., Wareham,N.J., Cupples,L.A., Econs,M.J., Evans,D.M., Harris,T.B., Kung,A.W., Psaty,B.M., Reeve,J., Spector,T.D., Streeten,E.A., Zillikens,M.C., Thorsteinsdottir,U., Ohlsson,C., Karasik,D., Richards,J.B., Brown,M.A., Stefansson,K., Uitterlinden,A.G., Ralston,S.H., Ioannidis,J.P., Kiel,D.P. and Rivadeneira,F. TITLE Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture JOURNAL Nat. Genet. 44 (5), 491-501 (2012) PUBMED 22504420 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4392) AUTHORS Hendrickson,S.L., Lautenberger,J.A., Chinn,L.W., Malasky,M., Sezgin,E., Kingsley,L.A., Goedert,J.J., Kirk,G.D., Gomperts,E.D., Buchbinder,S.P., Troyer,J.L. and O'Brien,S.J. TITLE Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression JOURNAL PLoS ONE 5 (9), E12862 (2010) PUBMED 20877624 REMARK GeneRIF: Observational study of gene-disease association. (HuGE Navigator) Publication Status: Online-Only COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DA573992.1, DA560663.1, BU189118.1, AP001010.4 and AA602175.1. Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## CDS exon combination :: AK055618.1 [ECO:0000331] RNAseq introns :: mixed/partial sample support ERS025084, ERS025088 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-70 DA573992.1 1-70 71-646 DA560663.1 1-576 647-1135 BU189118.1 94-582 1136-4151 AP001010.4 168773-171788 c 4152-4392 AA602175.1 1-241 c FEATURES Location/Qualifiers source 1..4392 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="18" /map="18p11.21" gene 1..4392 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /note="family with sequence similarity 210, member A" /db_xref="GeneID:125228" /db_xref="HGNC:28346" exon 1..264 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /inference="alignment:Splign:1.39.8" exon 265..404 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /inference="alignment:Splign:1.39.8" exon 405..905 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /inference="alignment:Splign:1.39.8" misc_feature 409..411 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /note="upstream in-frame stop codon" CDS 433..1251 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /note="uncharacterized protein C18orf19" /codon_start=1 /product="protein FAM210A" /protein_id="NP_001092271.1" /db_xref="GI:149408153" /db_xref="CCDS:CCDS11866.1" /db_xref="GeneID:125228" /db_xref="HGNC:28346" /translation="
MQWNVPRTVSRLARRTCLEPHNAGLFGHCQNVKGPLLLYNAESKVVLVQGPQKQWLHLSAAQCVAKERRPLDAHPPQPGVLRHKQGKQHVSFRRVFSSSATAQGTPEKKEEPDPLQDKSISLYQRFKKTFRQYGKVLIPVHLITSGVWFGTFYYAALKGVNVVPFLELIGLPDSVVSILKNSQSGNALTAYALFKIATPARYTVTLGGTSVTVKYLRSHGYMSTPPPVKEYLQDRMEETKELITEKMEETKDRLTEKLQETKEKVSFKKKVE
" misc_feature 802..1062 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /note="Protein of unknown function (DUF1279); Region: DUF1279; pfam06916" /db_xref="CDD:191640" misc_feature 838..900 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q96ND0.2); transmembrane region" variation 547 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /replace="a" /replace="t" /db_xref="dbSNP:35493157" variation 759 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /replace="a" /replace="g" /db_xref="dbSNP:34798758" exon 906..1017 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /inference="alignment:Splign:1.39.8" variation 931 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /replace="a" /replace="g" /db_xref="dbSNP:2847146" exon 1018..4384 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /inference="alignment:Splign:1.39.8" variation 1128 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /replace="g" /replace="t" /db_xref="dbSNP:35023957" STS 1693..1868 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="RH80402" /db_xref="UniSTS:90298" STS 1745..1941 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="STS-T67088" /db_xref="UniSTS:82091" STS 1922..2012 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="D18S1228" /db_xref="UniSTS:11696" polyA_signal 2035..2040 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" polyA_site 2065 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" STS 2393..2582 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="ECD04345" /db_xref="UniSTS:285422" STS 2406..4040 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="D1S1423" /db_xref="UniSTS:149619" STS 2406..2592 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="D1S1423" /db_xref="UniSTS:149619" STS 3038..3160 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="RH65191" /db_xref="UniSTS:13038" STS 3043..3194 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="SHGC-53804" /db_xref="UniSTS:28526" variation 4128 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /replace="a" /replace="g" /db_xref="dbSNP:1047427" STS 4224..4352 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="SHGC-31363" /db_xref="UniSTS:35822" polyA_signal 4360..4365 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" polyA_site 4384 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" ORIGIN
aactacgagtcccgacgtgccgcgcgcggcatgcagaagcttcactgagcgggcactggaggtcgcgagcacgttgctagtgggcgcggctggcggggccgggggcggcagggggctagcgtccggctgagcccggcgggttcctgcacgcggacccacgctttgtcgggctgctctgctgagtgacaccgccgtggcatccgaggagctgtggtccagcctgcgcggcgggaagcggcggcggcggctccagcgtcctaagagaagaaagaatttgactgatgggcgtaaggaagaaaaagagaccgaggcaagtttcagagaagtagtggaagatttttcaaaaaagctgtagaacaagaaagaaagtatgcttgggaaagacccaagcgggcatgtgaaggaagctgaaacctatcaacactcttcaaaatgcaatggaatgtaccacggactgtatctcgactggcacgcaggacatgcttggaaccacataatgctggtctctttggacactgtcaaaatgtaaagggacctttacttttatacaatgctgaatccaaagtggttttggtacaaggccctcaaaaacaatggttgcatttatctgctgcccagtgtgttgcaaaggaaaggaggccattggatgctcatccaccccaaccaggagtccttcgccataagcaagggaagcaacatgtttcattcaggagggttttttcatccagtgccacagctcagggaactccggaaaaaaaggaagagcctgatcctttgcaagacaaatctattagtctttatcaacgattcaagaagacatttagacagtatggaaaagttctgattccagtgcatctaataacttctggtgtttggtttggaacattttattatgcagccttgaaaggagtgaatgtcgttccttttctagaactcattgggttacctgacagtgtggtaagcatcctgaaaaactcccagagtggaaatgccctcacagcatatgccttgtttaagattgcaacacctgctcggtataccgtgactttgggaggaacatctgtcactgtgaagtatctgcgcagtcatggctacatgtccacgccgccacccgtcaaggagtatctgcaggacaggatggaagagacaaaggagcttatcacagagaaaatggaagaaacaaaagatagactcactgaaaagttacaagaaaccaaagaaaaagtttcctttaagaaaaaagtggaataaggtgccttatatagcagtatagaaaattcctgcactttaaccctttggaaactatgggcaaagatacatgtgtctgattatttttttggttagttgccgaaatatactagttctctgagggttaaagaagtaaaatacctttttaaagttaaatatcactagaaaaatcagtgttattacaagggaagaaatgaacccagtttaagaatttgccatcagtagcagtattaagcagtggttaatgtcttagaagtcagacttctttttcaaggtcttcagaaccacacttgatttctgttttgttgcagctgtaattgacacatactaggcagctgactccttgaatatccagtgtgacccataaaatagtctgttaataccggatcttaatttttatgttattcattaagattttaactatattcagtacgtaatttggagacaaactagcatcatcaaaactgcctgtaaataaggtgtttagtctttctataaaaacagaatagagcagttacctaccagttaaaatatcttatatgaagaaaatagaataaagatccagtcatatatgtaaataagatgtactgattgtacgtaaatgaaaaatggaccctttaaaaattatttttacctgaagcttgtcataatttttttaaagcaaatatatatatggtgatggtacttttcaaagtgtgtattagtggtgatcacctcaaacataaacctctgttgtgaatcatttgtgtccttttcaactgtctttcagaggaaaggtaaaaaatcattaaaccttaaattcattgttaaaatcaaatatttgtcagcagtaactcaagctcatggttctcaagcagaaaaaggtttgggagactaaaaatggagtcaggttttcatggagactgctaactccttggggtagacatgggccttgcctcagcaaaccagtgcaatttcccaatgtcttagtttcagaattcatgctgatttcattatggagtaaagttttaaattgtggctgctgctttttgtcttacattgaagggaaatatccttgtttgagcattctacttgattttttttttttttttttttttttttgagacggagcctccctctctctctcccagactggagtgcaatggtacaatctcggctcactgcatcctctgcctcccaggttcaagtgatcctcccgcctcagctttccaagtagctgggagtataagcgtgtgccaccacactcagctaatttttgtatttttagtggaggtggagtttcaccatgttagccaggctagtctccaactcctgacctcagcctcccgagtagctgggactacaggcgcccaccaccacgcccagctaatttttttgtatttttagtagagatggggtttcaccatcttaacaaagctatcattaaatcatttgcttgtaatgaaattcagccgttgtcagctgtgagcgttgcggggctggtggggtgtgtttgagtatgtaagtgtctatttcctgtgctctaacagtgactatttcagttctaacccttcaattgctaattggatgagggaatggcctcttagattgtccttgttttgacttatctgctaaggcgagagaatgtctgggtttgccacacagtcccgcagggacccctgctctttgccaggatttttatatcaagtacttagtttggccaaatttagagtatagtttaaaggggaaaaaaagtttgtatttgatgagtctaattactatattagaatgctttttaaatgaatatgctgtgattggaatctcttcttgggggccggggagagtgctgagagatgcagctgtgtctctgctctctgcagtcttgggcaggcagcaccgctgtctcctgatacagagggttgaatgcactgcttcacattgatgccacattttcaaatctaaacatgattaacatgttttttaagtatttatcaaataattcacatttttgcaggtttaagtgctgttttttaagatattaaacatgttccttgtttcttttttctttttaaccactggagactatgtgaaaatcttgtgttatatggaatttttctaaaacaatttccttttacttttcatgttgcatattttccagtggggataaattggaggttcttattactaataatcctgaaactaaaatttgcttttcctgcatagacatcttttgttagtccatttgagttttgttgccatccagtttcatgatcatgttgtgttagtctaatagacaatgagttactgcttgaatgatatgaaattctctagtaaaaaatgctctgaagatgtgagaagctctgttgtattacttggcaccaggaatgttacaaaaatgttgttgctagcatattgctaacctagtccttaagtttcagggattcctgtaatatgttgagtttggagtattaatagcaggctaacagaatacagtaccaatatgccaagttaaataattgagaatatatacagtatagtttgctatgtataatagacctcatttcatttacagtacacctcacacttgggattaattcacctataacctctgtgaactgcgagtgctcggcagaagcagccctgtgtcttacatgtctacatttatatttatatttatatttatttttttgagacagagtctcactctgtcacccaggctagagtgcagtggcatgatcatagctcacttgcgtcttgaactcctggctcaagtgatcctcccacctcagcctgctgagtagctgggactacaggtgcacaccaccatgcctggctaaaggcatgtctgcatttatgcgaggtgtgttgaccgggtggggagggagctaggactgagattcgcctgtgtaaaatgcacaaaaagggtttgctaagcaaattgatatttgaaatgaaagatggattaggtgagagacttagtttattcaggaataagagcaaaaccaaccacatcaaaaaatgtatttcactgagacagccttttgtacatacagcagggtgctgtttacagatttcaagaaaggagaaaaagaatgcttatactgagattacctacctcccagtagtgaaaataataaatttatcccttgaaatataaaaaaaaaa
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ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:125228 -> Cellular component: GO:0005739 [mitochondrion] evidence: IEA GeneID:125228 -> Cellular component: GO:0016021 [integral to membrane] evidence: IEA
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@meso_cacase at
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