2024-03-28 20:01:55, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001079670 3538 bp mRNA linear PRI 16-JUN-2013 DEFINITION Homo sapiens calcium binding protein 39-like (CAB39L), transcript variant 2, mRNA. ACCESSION NM_001079670 VERSION NM_001079670.1 GI:118766334 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3538) AUTHORS Zhang,W.J., Zhang,W.G., Zhang,P.Y., Cao,X.M., He,A.L., Chen,Y.X. and Gu,L.F. TITLE The expression and functional characterization associated with cell apoptosis and proteomic analysis of the novel gene MLAA-34 in U937 cells JOURNAL Oncol. Rep. 29 (2), 491-506 (2013) PUBMED 23135622 REMARK GeneRIF: In conclusion, our current results provide new evidence that MLAA-34 may be a novel anti-apoptotic factor in vitro, and the data presented here show a strong correlation between anti-apoptosis with the upregulation of MLAA-34. REFERENCE 2 (bases 1 to 3538) AUTHORS Zhao,J., He,A., Zhang,W., Meng,X. and Gu,L. TITLE Quantitative assessment of MLAA-34 expression in diagnosis and prognosis of acute monocytic leukemia JOURNAL Cancer Immunol. Immunother. 60 (4), 587-597 (2011) PUBMED 21240483 REMARK GeneRIF: our data indicate that MLAA-34 may be used as a prognostic marker for treatment decision-making in acute monocytic leukemia REFERENCE 3 (bases 1 to 3538) AUTHORS Zhang,P.Y., Zhang,W.G., He,A.L., Wang,J.L. and Li,W.B. TITLE Identification and functional characterization of the novel acute monocytic leukemia associated antigen MLAA-34 JOURNAL Cancer Immunol. Immunother. 58 (2), 281-290 (2009) PUBMED 18592235 REMARK GeneRIF: It was proposed that a splice variant MLAA-34 of CAB39L associated with acute monocytic leukemia. MLAA-34 was identified and characterized. Identification and functional characterization of the novel acute monocytic leukemia associated antigen MLAA-34 REFERENCE 4 (bases 1 to 3538) AUTHORS Kahn,B.B., Alquier,T., Carling,D. and Hardie,D.G. TITLE AMP-activated protein kinase: ancient energy gauge provides clues to modern understanding of metabolism JOURNAL Cell Metab. 1 (1), 15-25 (2005) PUBMED 16054041 REMARK Review article REFERENCE 5 (bases 1 to 3538) AUTHORS Dunham,A., Matthews,L.H., Burton,J., Ashurst,J.L., Howe,K.L., Ashcroft,K.J., Beare,D.M., Burford,D.C., Hunt,S.E., Griffiths-Jones,S., Jones,M.C., Keenan,S.J., Oliver,K., Scott,C.E., Ainscough,R., Almeida,J.P., Ambrose,K.D., Andrews,D.T., Ashwell,R.I., Babbage,A.K., Bagguley,C.L., Bailey,J., Bannerjee,R., Barlow,K.F., Bates,K., Beasley,H., Bird,C.P., Bray-Allen,S., Brown,A.J., Brown,J.Y., Burrill,W., Carder,C., Carter,N.P., Chapman,J.C., Clamp,M.E., Clark,S.Y., Clarke,G., Clee,C.M., Clegg,S.C., Cobley,V., Collins,J.E., Corby,N., Coville,G.J., Deloukas,P., Dhami,P., Dunham,I., Dunn,M., Earthrowl,M.E., Ellington,A.G., Faulkner,L., Frankish,A.G., Frankland,J., French,L., Garner,P., Garnett,J., Gilbert,J.G., Gilson,C.J., Ghori,J., Grafham,D.V., Gribble,S.M., Griffiths,C., Hall,R.E., Hammond,S., Harley,J.L., Hart,E.A., Heath,P.D., Howden,P.J., Huckle,E.J., Hunt,P.J., Hunt,A.R., Johnson,C., Johnson,D., Kay,M., Kimberley,A.M., King,A., Laird,G.K., Langford,C.J., Lawlor,S., Leongamornlert,D.A., Lloyd,D.M., Lloyd,C., Loveland,J.E., Lovell,J., Martin,S., Mashreghi-Mohammadi,M., McLaren,S.J., McMurray,A., Milne,S., Moore,M.J., Nickerson,T., Palmer,S.A., Pearce,A.V., Peck,A.I., Pelan,S., Phillimore,B., Porter,K.M., Rice,C.M., Searle,S., Sehra,H.K., Shownkeen,R., Skuce,C.D., Smith,M., Steward,C.A., Sycamore,N., Tester,J., Thomas,D.W., Tracey,A., Tromans,A., Tubby,B., Wall,M., Wallis,J.M., West,A.P., Whitehead,S.L., Willey,D.L., Wilming,L., Wray,P.W., Wright,M.W., Young,L., Coulson,A., Durbin,R., Hubbard,T., Sulston,J.E., Beck,S., Bentley,D.R., Rogers,J. and Ross,M.T. TITLE The DNA sequence and analysis of human chromosome 13 JOURNAL Nature 428 (6982), 522-528 (2004) PUBMED 15057823 REFERENCE 6 (bases 1 to 3538) AUTHORS Lee,S.Y., Obata,Y., Yoshida,M., Stockert,E., Williamson,B., Jungbluth,A.A., Chen,Y.T., Old,L.J. and Scanlan,M.J. TITLE Immunomic analysis of human sarcoma JOURNAL Proc. Natl. Acad. Sci. U.S.A. 100 (5), 2651-2656 (2003) PUBMED 12601173 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DA146462.1, BX647518.1, AA278473.1, AL138875.8 and CA450475.1. ##Evidence-Data-START## Transcript exon combination :: BX647518.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support ERS025082 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-22 DA146462.1 1-22 23-619 BX647518.1 1-597 620-951 AA278473.1 148-479 952-2375 BX647518.1 930-2353 2376-2995 AL138875.8 70004-70623 c 2996-3538 CA450475.1 1-543 c FEATURES Location/Qualifiers source 1..3538 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="13" /map="13q14.2" gene 1..3538 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /note="calcium binding protein 39-like" /db_xref="GeneID:81617" /db_xref="HGNC:20290" /db_xref="MIM:612175" exon 1..100 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /inference="alignment:Splign:1.39.8" exon 101..238 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /inference="alignment:Splign:1.39.8" variation 159 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /replace="c" /replace="t" /db_xref="dbSNP:3764090" exon 239..314 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /inference="alignment:Splign:1.39.8" misc_feature 271..273 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /note="upstream in-frame stop codon" exon 315..456 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /inference="alignment:Splign:1.39.8" CDS 346..1359 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /note="sarcoma antigen NY-SAR-79; antigen MLAA-34; U937-associated antigen; mo25-like protein; MO25beta" /codon_start=1 /product="calcium-binding protein 39-like" /protein_id="NP_001073138.1" /db_xref="GI:118766335" /db_xref="CCDS:CCDS9416.2" /db_xref="GeneID:81617" /db_xref="HGNC:20290" /db_xref="MIM:612175" /translation="
MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNEKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKTAP
" misc_feature 361..1347 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /note="Mo25-like; Region: Mo25; pfam08569" /db_xref="CDD:203985" exon 457..621 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /inference="alignment:Splign:1.39.8" exon 622..740 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /inference="alignment:Splign:1.39.8" variation 623..624 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /replace="a" /replace="g" /db_xref="dbSNP:11546263" exon 741..909 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /inference="alignment:Splign:1.39.8" exon 910..969 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /inference="alignment:Splign:1.39.8" exon 970..1035 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /inference="alignment:Splign:1.39.8" exon 1036..1179 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /inference="alignment:Splign:1.39.8" exon 1180..3523 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /inference="alignment:Splign:1.39.8" STS 1333..1459 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /standard_name="RH103315" /db_xref="UniSTS:97646" STS 1540..2358 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /standard_name="CAB39L__4492" /db_xref="UniSTS:471378" STS 2132..2291 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /standard_name="RH91905" /db_xref="UniSTS:87826" polyA_signal 2350..2355 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" polyA_site 2374 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" STS 3289..3416 /gene="CAB39L" /gene_synonym="bA103J18.3; MO25-BETA; MO2L; RP11-103J18.3" /standard_name="STS-N23383" /db_xref="UniSTS:57953" ORIGIN
agcgctctcggcttgtctcgcgcactgtagctgagccaatggagttactcgtagtcgagaggccggcatcactggagtggtggcgcagctgtttcctccggatatccatcaaatattgagaagaaagaatatcaggagcaaagtgttctaagttgctgttcagaacgtaaagatgcgaaccccaaatcagtggtttgttcattcttcatgcaagagcaatgcactaaaggagagaagcaagctgtggtgatcagtgactttggtgaaagctaagaaggttcaaacaaatttgcaaatgatatacaacttctaagcattccatattggaagaagagatttctacacatgaaaaaaatgcctttgtttagtaaatcacacaaaaatccagcagaaattgtgaaaatcctgaaagacaatttggccattttggaaaagcaagacaaaaagacagacaaggcttcagaagaagtgtctaaatcactgcaagcaatgaaagaaattctgtgtggtacaaacgagaaagaacccccaacagaagcagtggctcagctagcacaagaactctacagcagtggcctgctagtgacactgatagctgacctgcagctgatagactttgagggaaaaaaagatgtgacccagatatttaacaacatcttgagaagacagataggcactcggagtcctactgtggagtatattagtgctcatcctcatatcctgtttatgctcctcaaaggatatgaagccccacagattgccttacgttgtgggattatgctgagagaatgtattcgacatgaaccacttgccaaaatcatcctcttttctaatcaattcagagatttctttaagtacgtggagttgtcaacatttgatattgcttcagatgcctttgctactttcaaggatttactaaccagacataaagtgttggtagcagacttcttagaacaaaattacgacactatttttgaagactatgagaaattgcttcagtctgagaattatgttactaagagacagtctttaaagctgctaggggagctgatcctggaccgtcacaactttgccatcatgacaaagtatatcagcaagccggagaacctgaaactcatgatgaacctccttcgggataaaagtcccaacatccagtttgaagcctttcatgtttttaaggtgtttgtggccagtcctcacaaaacacagcctattgtggagatcctgttaaaaaatcagcccaaactcattgagtttctgagcagcttccaaaaagaaaggacggatgatgagcagttcgctgacgagaagaactacttgattaaacagatccgagacttgaagaaaacggccccttgaagagctccccggcccctgtcacagtcagtcgtctcatttgtccagtttgtacagtgtgtcatttcagaaagtcatcattcttgggaagactttggaggtgcctattttttctgctgtaattgttctgggtagatggagtataaacatttgaatggaaaaaaattaacctagaataatatattcattttagtcaagtctgtgattatttatgtgaaatgagaaccattgtatcagatgttgataaaagcaattttaacttgcagatgtgagcccctgggcacaatgagccgctaaatgggagctcaattgacaggcatcaccaagtcttcaaggaggactgagttctcaggggagaactgggaatggggccagggtgcaaaaatgctttgcccatctgtaggtagacacacagatcgctcagggcactgagagatcccagaaggtaacgttaatgttttcagtcattgtgtgtcctttgttgctgccaatgtctttggactgtaatcagtgcatccacacctcccaggatccagtgctccctctcagctcagtctcccctctctccctgtcctgcattccatcccagctcctcagcatggcctcagtgggcgcacccatgcctcccgcagtccaggtgagcaggggagcaactgagcaggaagaggatggatcaacaagggtcacggggaataggggacccacggggtgtgacctgcttgctagagaactgtgaacatgtggctctggatagagtgactgctgctccatattagcttccagagggtgagtgagggacagaatatttccttcataatggtcatgggtgaatgctttctgctgtaagtgtcttttagagtaggaatcagcatagtgggatgcccagcaggcacaaaccatgggtccagggagtctcagcggggaacttctatcagtatcaataaccattggaaggagaaatgattcatgtgtgaaaaaattctcagatccatcaataaatttttttcagagccattgtatcagatgttgataaaagcaatttttttctaataagctgtcattctataattgcccatcacagtctttagtgaacacatagaaagcctatacagttttggtcctgaatagtctcttgtgactaggatgattgaggtgttaattcctcttccttataaaaaggcttggaatcaaaaatattttaaaaggccgtggtttcgtttcagacatcaaccatctaaaacgggattttaaagcgatattttacaagaatgaaaggcacaattgttgatctgtattttttacacttcagtttctaaatcatgaatcgttgccttccacaggaaccctcccttatacattacttgagtgttgtgtagtttttcttcagccaggtatttctctgcctagagaggggaagagaaatgtgttctccaggactgatcccctttgtagattttgtacctgaagagttacctggcagggcaccacccttggctaggcccaggtgtgtgtttctttcttgcctggcatggaccccgaggcaggtgatgtggggcctggcgcacctccccgctttggcagctgtggcctccctggccagtgcccttgcaggaggccggccggcagcctgatgacccgtactctttagtcactgacgtcagattatttttataacgttccctgacagttcagagtcccttcgaattgcacttttctggtttcgcttatttaattaaaagagatgagtgtaagtataaaaaatgaaggtgaaataaccattggaattgtatttggttacttaatactgttccacaacatcttgggacgtctgttttcctttggagagtgaggccttgttattattcttttctgataaagaaaacattttatttcctttgggcttgcattagctctttcctagcaacccattatcccagctcagtacctttcaaacagaaaactagagtctggggttttgttgtgatctgaatttgtaagttattaatgtgaaagggggagcaggaagctccccctttgcacaaagggggatttgtttgcacaaagttcactgtaaatactgtgagaattgaattctgaaaaggtcatatttagtgatttcaaaagcacacatttaaatgaagactgactaaataaaaggtaccacacaaaaaaaaaaaaaaaa
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ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:81617 -> Biological process: GO:0007050 [cell cycle arrest] evidence: TAS GeneID:81617 -> Biological process: GO:0008286 [insulin receptor signaling pathway] evidence: TAS GeneID:81617 -> Cellular component: GO:0005829 [cytosol] evidence: TAS
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