2024-04-26 04:59:17, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001042603 10835 bp mRNA linear PRI 09-FEB-2013 DEFINITION Homo sapiens lysine (K)-specific demethylase 5A (KDM5A), mRNA. ACCESSION NM_001042603 VERSION NM_001042603.1 GI:110618243 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 10835) AUTHORS Beshiri,M.L., Holmes,K.B., Richter,W.F., Hess,S., Islam,A.B., Yan,Q., Plante,L., Litovchick,L., Gevry,N., Lopez-Bigas,N., Kaelin,W.G. Jr. and Benevolenskaya,E.V. TITLE Coordinated repression of cell cycle genes by KDM5A and E2F4 during differentiation JOURNAL Proc. Natl. Acad. Sci. U.S.A. 109 (45), 18499-18504 (2012) PUBMED 23093672 REMARK GeneRIF: In terminally differentiated cells, common KDM5A and E2F4 gene targets were bound by the pRB-related protein p130, a DREAM complex component. REFERENCE 2 (bases 1 to 10835) AUTHORS Chicas,A., Kapoor,A., Wang,X., Aksoy,O., Evertts,A.G., Zhang,M.Q., Garcia,B.A., Bernstein,E. and Lowe,S.W. TITLE H3K4 demethylation by Jarid1a and Jarid1b contributes to retinoblastoma-mediated gene silencing during cellular senescence JOURNAL Proc. Natl. Acad. Sci. U.S.A. 109 (23), 8971-8976 (2012) PUBMED 22615382 REMARK GeneRIF: Jarid1a/b-mediated H3K4 demethylation contributes to silencing of retinoblastoma target genes in senescent cells, suggesting a mechanism by which retinoblastoma triggers gene silencing. REFERENCE 3 (bases 1 to 10835) AUTHORS Pointon,J.J., Harvey,D., Karaderi,T., Appleton,L.H., Farrar,C. and Wordsworth,B.P. TITLE The histone demethylase JARID1A is associated with susceptibility to ankylosing spondylitis JOURNAL Genes Immun. 12 (5), 395-398 (2011) PUBMED 21562575 REMARK GeneRIF: JARID1A or a locus in strong linkage disequilibrium with it is a positional candidate for susceptibility to AS. REFERENCE 4 (bases 1 to 10835) AUTHORS Stratmann,A. and Haendler,B. TITLE The histone demethylase JARID1A regulates progesterone receptor expression JOURNAL FEBS J. 278 (9), 1458-1469 (2011) PUBMED 21348942 REMARK GeneRIF: that H3K4 tri- and dimethylation play an important role and JARID1A is the histone-demethylating enzyme responsible for removal of this mark REFERENCE 5 (bases 1 to 10835) AUTHORS Yan,H., Chen,X., Zhang,Q., Qin,J., Li,H., Liu,C., Calhoun-Davis,T., Coletta,L.D., Klostergaard,J., Fokt,I., Skora,S., Priebe,W., Bi,Y. and Tang,D.G. TITLE Drug-tolerant cancer cells show reduced tumor-initiating capacity: depletion of CD44 cells and evidence for epigenetic mechanisms JOURNAL PLoS ONE 6 (9), E24397 (2011) PUBMED 21935404 REMARK GeneRIF: Evidence was provided that chronic drug exposure generated drug-tolerant cells via epigenetic mechanisms involving molecules such as CD44 and KDM5A. REFERENCE 6 (bases 1 to 10835) AUTHORS Mao,S., Neale,G.A. and Goorha,R.M. TITLE T-cell oncogene rhombotin-2 interacts with retinoblastoma-binding protein 2 JOURNAL Oncogene 14 (13), 1531-1539 (1997) PUBMED 9129143 REFERENCE 7 (bases 1 to 10835) AUTHORS Baens,M., Aerssens,J., van Zand,K., Van den Berghe,H. and Marynen,P. TITLE Isolation and regional assignment of human chromosome 12p cDNAs JOURNAL Genomics 29 (1), 44-52 (1995) PUBMED 8530100 REFERENCE 8 (bases 1 to 10835) AUTHORS Kim,Y.W., Otterson,G.A., Kratzke,R.A., Coxon,A.B. and Kaye,F.J. TITLE Differential specificity for binding of retinoblastoma binding protein 2 to RB, p107, and TATA-binding protein JOURNAL Mol. Cell. Biol. 14 (11), 7256-7264 (1994) PUBMED 7935440 REFERENCE 9 (bases 1 to 10835) AUTHORS Fattaey,A.R., Helin,K., Dembski,M.S., Dyson,N., Harlow,E., Vuocolo,G.A., Hanobik,M.G., Haskell,K.M., Oliff,A., Defeo-Jones,D. et al. TITLE Characterization of the retinoblastoma binding proteins RBP1 and RBP2 JOURNAL Oncogene 8 (11), 3149-3156 (1993) PUBMED 8414517 REFERENCE 10 (bases 1 to 10835) AUTHORS Defeo-Jones,D., Huang,P.S., Jones,R.E., Haskell,K.M., Vuocolo,G.A., Hanobik,M.G., Huber,H.E. and Oliff,A. TITLE Cloning of cDNAs for cellular proteins that bind to the retinoblastoma gene product JOURNAL Nature 352 (6332), 251-254 (1991) PUBMED 1857421 COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from BC053893.1, DB079061.1, AB209999.1 and AC007406.1. Summary: The protein encoded by this gene is a ubiquitously expressed nuclear protein. It binds directly, with several other proteins, to retinoblastoma protein which regulates cell proliferation. This protein also interacts with rhombotin-2 which functions distinctly in erythropoiesis and in T-cell leukemogenesis. Rhombotin-2 is thought to either directly affect the activity of the encoded protein or may indirectly modulate the functions of the retinoblastoma protein by binding to this protein. [provided by RefSeq, Mar 2010]. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##RefSeq-Attributes-START## Transcript_exon_combination_evidence :: AB209999.1 [ECO:0000332] ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-352 BC053893.1 1-352 353-863 DB079061.1 44-554 864-6568 AB209999.1 711-6415 6569-10835 AC007406.1 106980-111246 c FEATURES Location/Qualifiers source 1..10835 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="12" /map="12p11" gene 1..10835 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /note="lysine (K)-specific demethylase 5A" /db_xref="GeneID:5927" /db_xref="HGNC:9886" /db_xref="MIM:180202" exon 1..528 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" misc_feature 63..613 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /note="Region: Similar to Unigene cluster containing AI017036 and W16898" variation 92 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /replace="a" /replace="g" /db_xref="dbSNP:11552171" misc_feature 295..297 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /note="upstream in-frame stop codon" CDS 364..5436 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /note="retinoblastoma-binding protein 2; retinoblastoma binding protein 2; Jumonji, AT rich interactive domain 1A (RBP2-like); Jumonji, AT rich interactive domain 1A (RBBP2-like); histone demethylase JARID1A; jumonji/ARID domain-containing protein 1A" /codon_start=1 /product="lysine-specific demethylase 5A" /protein_id="NP_001036068.1" /db_xref="GI:110618244" /db_xref="CCDS:CCDS41736.1" /db_xref="GeneID:5927" /db_xref="HGNC:9886" /db_xref="MIM:180202" /translation="
MAGVGPGGYAAEFVPPPECPVFEPSWEEFTDPLSFIGRIRPLAEKTGICKIRPPKDWQPPFACEVKSFRFTPRVQRLNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELFQSGVSLMGVQMPNLDLKEKVEPEVLSTDTQTSPEPGTRMNILPKRTRRVKTQSESGDVSRNTELKKLQIFGAGPKVVGLAMGTKDKEDEVTRRRKVTNRSDAFNMQMRQRKGTLSVNFVDLYVCMFCGRGNNEDKLLLCDGCDDSYHTFCLIPPLPDVPKGDWRCPKCVAEECSKPREAFGFEQAVREYTLQSFGEMADNFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVIVEYGADISSKDFGSGFPVKDGRRKILPEEEEYALSGWNLNNMPVLEQSVLAHINVDISGMKVPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPSHAAEQLEEVMRELAPELFESQPDLLHQLVTIMNPNVLMEHGVPVYRTNQCAGEFVVTFPRAYHSGFNQGYNFAEAVNFCTADWLPIGRQCVNHYRRLRRHCVFSHEELIFKMAADPECLDVGLAAMVCKELTLMTEEETRLRESVVQMGVLMSEEEVFELVPDDERQCSACRTTCFLSALTCSCNPERLVCLYHPTDLCPCPMQKKCLRYRYPLEDLPSLLYGVKVRAQSYDTWVSRVTEALSANFNHKKDLIELRVMLEDAEDRKYPENDLFRKLRDAVKEAETCASVAQLLLSKKQKHRQSPDSGRTRTKLTVEELKAFVQQLFSLPCVISQARQVKNLLDDVEEFHERAQEAMMDETPDSSKLQMLIDMGSSLYVELPELPRLKQELQQARWLDEVRLTLSDPQQVTLDVMKKLIDSGVGLAPHHAVEKAMAELQELLTVSERWEEKAKVCLQARPRHSVASLESIVNEAKNIPAFLPNVLSLKEALQKAREWTAKVEAIQSGSNYAYLEQLESLSAKGRPIPVRLEALPQVESQVAAARAWRERTGRTFLKKNSSHTLLQVLSPRTDIGVYGSGKNRRKKVKELIEKEKEKDLDLEPLSDLEEGLEETRDTAMVVAVFKEREQKEIEAMHSLRAANLAKMTMVDRIEEVKFCICRKTASGFMLQCELCKDWFHNSCVPLPKSSSQKKGSSWQAKEVKFLCPLCMRSRRPRLETILSLLVSLQKLPVRLPEGEALQCLTERAMSWQDRARQALATDELSSALAKLSVLSQRMVEQAAREKTEKIISAELQKAAANPDLQGHLPSFQQSAFNRVVSSVSSSPRQTMDYDDEETDSDEDIRETYGYDMKDTASVKSSSSLEPNLFCDEEIPIKSEEVVTHMWTAPSFCAEHAYSSASKSCSQGSSTPRKQPRKSPLVPRSLEPPVLELSPGAKAQLEELMMVGDLLEVSLDETQHIWRILQATHPPSEDRFLHIMEDDSMEEKPLKVKGKDSSEKKRKRKLEKVEQLFGEGKQKSKELKKMDKPRKKKLKLGADKSKELNKLAKKLAKEEERKKKKEKAAAAKVELVKESTEKKREKKVLDIPSKYDWSGAEESDDENAVCAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCAKKQGPVSPGPAPPPSFIMSYKLPMEDLKETS
" misc_feature 436..540 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /note="Small domain found in the jumonji family of transcription factors; Region: JmjN; smart00545" /db_xref="CDD:128818" misc_feature 610..873 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /note="ARID/BRIGHT DNA binding domain; Region: ARID; pfam01388" /db_xref="CDD:201763" misc_feature 1246..1392 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /note="PHD-finger; Region: PHD; pfam00628" /db_xref="CDD:201356" misc_feature 1618..1632 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (P29375.3); Region: GSGFP motif" misc_feature 1771..2121 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /note="JmjC domain, hydroxylase; Region: JmjC; pfam02373" /db_xref="CDD:202224" misc_feature 2389..2550 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /note="C5HC2 zinc finger; Region: zf-C5HC2; pfam02928" /db_xref="CDD:190479" misc_feature 2581..3579 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /note="PLU-1-like protein; Region: PLU-1; pfam08429" /db_xref="CDD:203940" misc_feature 3694..3696 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (P29375.3); phosphorylation site" misc_feature 3694..3696 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /experiment="experimental evidence, no additional details recorded" /note="phosphorylation site" misc_feature 3853..4008 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /note="PHD zinc finger; Region: PHD; smart00249" /db_xref="CDD:197604" misc_feature 4354..4356 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (P29375.3); phosphorylation site" misc_feature 4390..4392 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /experiment="experimental evidence, no additional details recorded" /note="Phosphothreonine; propagated from UniProtKB/Swiss-Prot (P29375.3); phosphorylation site" misc_feature 4396..4398 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (P29375.3); phosphorylation site" misc_feature 5155..5157 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (P29375.3); phosphorylation site" misc_feature 5155..5157 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /experiment="experimental evidence, no additional details recorded" /note="phosphorylation site" misc_feature 5170..5172 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (P29375.3); phosphorylation site" misc_feature 5170..5172 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /experiment="experimental evidence, no additional details recorded" /note="phosphorylation site" misc_feature 5206..5337 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /note="PHD-finger; Region: PHD; pfam00628" /db_xref="CDD:201356" misc_feature 5230..5433 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (P29375.3); Region: Interaction with LMO2" misc_feature 5359..5361 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (P29375.3); phosphorylation site" exon 529..606 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" exon 607..729 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" exon 730..900 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" misc_feature 828..1192 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /note="Region: tg85f09.x1 Homo sapiens cDNA AI493397" STS 839..951 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /standard_name="G26350" exon 901..1035 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" exon 1036..1141 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" exon 1142..1233 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" exon 1234..1392 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" misc_feature 1248..1388 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /note="Region: yi91f11.r1 Homo sapiens cDNA R81128" variation 1386 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /replace="c" /replace="g" /db_xref="dbSNP:2229352" exon 1393..1512 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" exon 1513..1671 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" misc_feature 1554..2720 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /note="Region: Similar to Unigene cluster containing Z44246, AA053435, and AA703247" exon 1672..1853 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" exon 1854..2016 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" exon 2017..2136 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" exon 2137..2331 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" exon 2332..2513 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" variation 2346 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /replace="a" /replace="c" /db_xref="dbSNP:2229349" exon 2514..2638 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" exon 2639..2789 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" exon 2790..2904 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" exon 2905..3260 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" variation 2957 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /replace="c" /replace="t" /db_xref="dbSNP:11062385" exon 3261..3399 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" STS 3396..3529 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /standard_name="RH44598" /db_xref="UniSTS:59193" exon 3400..3579 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" variation 3558 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /replace="c" /replace="t" /db_xref="dbSNP:2229350" exon 3580..3741 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" exon 3742..4293 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" variation 3931 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /replace="c" /replace="g" /db_xref="dbSNP:2229353" exon 4294..4437 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" exon 4438..4597 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" variation 4512 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:2229351" exon 4598..4818 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" exon 4819..5229 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" STS 4878..5002 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /standard_name="RH70148" /db_xref="UniSTS:34151" exon 5230..10835 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /inference="alignment:Splign:1.39.8" variation 5276 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /replace="a" /replace="g" /db_xref="dbSNP:1049953" variation 5534 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /replace="c" /replace="t" /db_xref="dbSNP:1049954" STS 5584..5718 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /standard_name="D12S1897" /db_xref="UniSTS:71658" variation 5661 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /replace="c" /replace="t" /db_xref="dbSNP:1049956" STS 5795..6614 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /standard_name="JARID1A_2177" /db_xref="UniSTS:280794" STS 6414..6504 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /standard_name="D12S1914" /db_xref="UniSTS:18654" STS 7917..8077 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /standard_name="RH68615" /db_xref="UniSTS:74082" variation 8607 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /replace="a" /replace="c" /db_xref="dbSNP:1043599" STS 9015..9192 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /standard_name="RH47587" /db_xref="UniSTS:71747" STS 9827..9952 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /standard_name="RH11182" /db_xref="UniSTS:40953" STS 9885..9997 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /standard_name="A003M44" /db_xref="UniSTS:53263" STS 10341..10564 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /standard_name="RH70779" /db_xref="UniSTS:40357" STS 10498..10710 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /standard_name="RH75356" /db_xref="UniSTS:91513" STS 10589..10754 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" /standard_name="STS-R65684" /db_xref="UniSTS:69464" polyA_signal 10727..10732 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" polyA_site 10763 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" polyA_site 10835 /gene="KDM5A" /gene_synonym="JARID1A; RBBP-2; RBBP2; RBP2" ORIGIN
gcagaactttggcgggcaaggagacaaacagccacactgtgctgccggggaagagaagaagaaggaaaggccagacacacaggcgtcgtgcagctgcggaaggattccgtttcctgcagggggcggagggatttgacagcacggtaacttccggaaaagtcctgaacctcagtggaaaagccttgcaagaaacaataacaaacgggaggaggaagcgattctggggtttctgtgttgaacggttcttgtccgcgaagatgcgcttcggcctctgtcaggggacttgaacgggcttagtgggcttcagccagcttttctccaccggttccccacggggacccccccccccccccggccgttgcaatggcgggcgtggggccggggggctacgcggcggagttcgtgccaccgccagagtgccccgtctttgagccgagttgggaggagttcacagatccgctcagctttatcggccgcatccggcctttggcggagaaaaccggcatctgcaaaattcggccgcccaaggactggcagcctccatttgcctgtgaagtaaaaagctttcgtttcactccaagagtccagcgcctgaatgaacttgaggcaatgaccagagtgagattggatttcttggatcaactagcaaaattttgggaacttcaaggatctactctgaagatccctgtggtagagagaaaaatcctggatctgtatgctttgagcaagattgttgccagcaaaggaggttttgaaatggtcaccaaagagaagaaatggtctaaagtgggtagtcgcttgggatatctgccaggaaaaggaactgggtctcttttgaagtcacattatgaaagaattctctacccatatgagcttttccagtctggtgtgagccttatgggtgtgcagatgcctaatttagatcttaaagaaaaagtggagcctgaggttctcagcactgatacccaaacttccccagagccaggcacaaggatgaacattctgccgaagagaacaagacgtgtgaagactcagtcagaatctggagatgtgagtagaaacacggaactgaagaaacttcagatttttggggctgggcccaaggttgtgggcttggcaatgggaacaaaagataaagaagatgaggtcacccgaagacgaaaagttaccaacaggtcagacgcatttaacatgcaaatgagacaacggaaaggcactctctctgttaactttgttgatctctatgtttgtatgttttgtggtcggggaaacaatgaagataaattgcttttgtgtgatggatgtgatgacagctatcatacattttgtctaattcctccactacctgatgtgcccaaaggagactggaggtgtcctaaatgtgtcgccgaggaatgtagcaaacctcgagaagcctttggatttgaacaagctgtacgagagtatacacttcagagctttggagagatggcagataattttaagtctgattattttaatatgccagtccatatggttcccacagaactagtagaaaaggaattttggcggctggtaagcagcattgaagaagatgttattgtggaatatggagcagatatctcctcaaaagactttggaagtggatttccggtgaaggatgggcggagaaagattctgccagaagaagaggaatatgcactttctggttggaatttgaataacatgcctgtcctggaacagtctgttcttgcacatattaatgtggacatctctggtatgaaagtgccgtggctctatgtgggaatgtgcttctcttctttttgctggcacattgaggatcactggagttattccatcaactacttgcactggggggagccaaagacatggtatggtgtgccatctcatgctgcagagcaactggaggaggtgatgagagagctggcccccgagttatttgaatcccagcctgatcttctgcatcagttagttaccatcatgaaccccaacgtgctaatggagcatggtgtgcctgtgtacaggaccaatcagtgtgctggcgagtttgttgtgacatttcctcgtgcctatcactctggatttaaccagggctacaactttgctgaagctgtgaacttctgtactgctgactggttgcccattggacgtcaatgtgtaaatcattaccgacgcctaaggcgccactgtgtcttttcacacgaggaactaattttcaagatggcagcagatccagaatgcttagatgtggggctggctgccatggtctgcaaagaattgactctcatgactgaagaagaaacacgattaagagagtctgttgtacagatgggtgtcctgatgtcagaagaagaagtgtttgaacttgttcctgatgatgagcggcagtgttcagcatgcagaaccacatgttttctctctgctctcacatgttcctgtaatcctgagcggcttgtatgtctctaccatccaactgatctgtgcccctgccccatgcagaagaaatgtcttagatatcgctacccattagaagacctcccttctctgctatatggtgtaaaagtcagggcacagtcctatgacacttgggtcagtcgtgttacagaagcattgtctgctaacttcaaccacaaaaaagatttgattgaattgcgagtaatgctggaagatgctgaggataggaaatacccagagaatgatctctttcgaaaactcagggatgctgtaaaagaagctgagacctgtgcttctgtggctcagctgcttctgagcaaaaagcagaaacacagacagagcccagatagtgggaggactcggaccaaactgacagtggaagaattgaaggcctttgtccaacaactttttagtcttccgtgtgtcatcagccaagctcggcaagtaaagaatctgctagatgatgtggaagagtttcatgaacgtgctcaggaggccatgatggatgaaaccccagattcttccaaactccagatgttgatagatatgggctctagtctctatgtggaactccctgaattaccacgactgaagcaagagctacaacaggctcggtggttggacgaagtaagactgaccttatcagatccgcaacaagtcactttggatgtcatgaagaagctgatagactctggggtagggttggcaccccaccatgctgtggagaaagcaatggctgaactacaggagctccttacagtctctgaacgatgggaagaaaaggctaaggtctgcctacaggcaagaccgaggcacagtgtggcaagtttagaaagcattgtgaatgaagccaagaacattccagcctttctacccaatgtgttgtccttgaaagaagccttacaaaaggctcgagaatggaccgctaaagtggaagctattcagagtggcagcaattacgcttatttggagcagcttgagagcttgtctgcgaaaggacgccctattcctgtgcgtcttgaagcactgccgcaagtggaatcacaggtagcagcagcacgggcatggagagaacggactgggcggacgtttcttaagaagaattctagccatacattgttacaggtgctgagcccccggaccgacattggtgtatatgggagtggcaaaaataggaggaaaaaagtaaaagaactaatagaaaaagaaaaagaaaaggatctggacctggagcctctgagtgatctggaggaaggattggaggaaaccagagatacagccatggtggtggcagttttcaaagaacgggagcaaaaagagattgaagccatgcattctctcagagcagccaacctagccaagatgacaatggtggaccgcatagaagaagtaaaattttgcatttgccgcaagacagccagtgggtttatgctacagtgtgagctctgcaaagactggttccataacagctgtgttcctcttcctaaatcaagttcccaaaaaaaaggatccagctggcaagctaaagaagtaaaattcctttgccctctttgtatgcggtctcgaaggcccaggctagagactattctgtcactcctggtatcccttcagaagttgcccgtacggttgcctgaaggagaggccctgcagtgtttgacagaacgtgctatgagttggcaagatagagcgcggcaggctctagccacagatgaactatcctctgccctggccaaactatctgtgttgagccagcgtatggtggaacaggcggctcgagaaaaaactgaaaagatcatcagtgcagaactccaaaaagcagctgccaatccagacttacagggacacttacctagtttccagcagtctgcttttaaccgggtggtgagcagtgtgtcatcttctcctcgacaaacaatggactatgatgatgaagaaacagactctgatgaagacattcgagagacatatggctacgacatgaaggacacagccagtgtgaagtcctctagtagtcttgaacccaatcttttttgtgatgaagagattcccatcaaatccgaggaggtggtgacccacatgtggacagcaccttcattttgtgcagagcatgcttattcttctgcttctaagagttgttctcaaggttctagcaccccaaggaaacaacctcggaagagccctttggtgccccgaagtttggaacctccagtgctggagttgtcacctggagctaaggcacaactggaagaacttatgatggttggagatctcctggaagtatctctggacgagactcaacacatatggcggattttgcaggccacacacccaccctctgaagacagattcttgcatatcatggaggatgacagcatggaagagaaaccactaaaagtgaaaggaaaggactcttcagagaagaaacggaaacggaagctagaaaaggtagagcaactttttggagaaggaaaacagaagtccaaggagttaaagaaaatggacaaacctagaaagaagaaattaaaattaggtgcagacaaatcaaaggagctgaataaactggccaagaaactagcaaaagaagaagagagaaagaaaaagaaggagaaggctgctgcagccaaagttgaacttgtgaaagagagcactgaaaagaaaagagagaaaaaggtgctggacatcccctcaaagtatgactggtcaggagcagaggagtctgatgatgagaatgctgtgtgcgcagcacagaactgccaaaggccctgcaaggacaaggtagactgggtacaatgtgatggtggctgtgatgagtggtttcatcaagtttgtgtgggtgtatctccagaaatggctgaaaatgaagattacatctgtataaactgtgcaaagaagcaggggccagttagcccaggtccagcaccacctccttccttcataatgagctacaaactaccaatggaggatcttaaagagaccagttagcagatgcttggttagtttgggacatggggggacatggaccacattgagaccttagtcatcaagtagagtggtttatatccacttggaatgttgcttccaaagatgaatggccttcagagaaagtccccttagtgctggcttcctctttgcatggactctgtgggttacattctctatcaacatatctatgcagagggtgtcttctttggtacaacagccaatatttcatgtctcctttgagtgtggtttactgcattaaggccagatgcttaattgagctctagggtggctggttagtattaatacattggtgtgctaacagggcatataggatgtggcttttgtccagctgatagtagttagaggcttacaacttaggagcagcaccaactgaaggtgctaattgcttggatctccttcattgggatagttggagagggattggagtaccactttccttccactgttacctggtacttaatgccctaaagatacaactaggagtaacagggccaaagttatttctgttagacgtcaaggaatggtatcacagtctattgacctcagcgatttgtgcttgtttgtgctagaagaacatcccaaataggagaacctctcacaagctggggcaggtcaccttatctttgtaagatgaggatatcatctagatcagaaatctgactagattggattctgaggagaagaacctactacaaggcaaggagccgttttttggctttgaaaagtcttgctgtcttgggtctacattttagggaagagcaggtacatggatccaggcttctgccaaaaaaaaaaagagaagaagatgacgatgatgaccagtcgtactatcttactgagccacagtgatgcatgcttttcggggaaaacttcattcacaagtattccagacaccaggcttcaggcatggccatgagcaagaccagcaaataacagctttttgccttgcagccctgaccccaatgtctgctgtttccaacactggtgatttctaactacggcccacagcagatgctgttgaataacaccatggcttcatcagaggatgtggggttgtagtacctctgggtgatgaagttgttttagtaaatccatttttaaaaaaaaaaaaggacttgtttttacttttttctaaatgtctctgactactgactgttctatacatagattatttttccttttttaatatacatatatgaatatataaatatatatatttactgttaccagcagcatatgacagagtttcaacatcaaaaatccatttgggggcttgctttttcttttttgctttaaaaaaaaaaatcccattccttctttgtagtacaaggagttagcactccctcctccatcccagcctgaccagatcttccattttgcttttgttcatatagataattatatgtcctttgtgtgttgggacttgtccctgtctgttgggaaacttggtctcactctagtctgtgctggctcttttttcttttgtgtgtgaatgtttgaaactatggtgctgtgtcctcttccctcctgttgtgttctctgttcttcttaaggtattaggtaagctgtatgtaaactcttattagaaggggactaatttttttttaaaggacaaaaaaaaaaatgactaaaaatagtgttttgtcatcactgtctggtgtctttattttggtttaaaaaaatctgtggtttgacttaaattcatcagttttccttttaaaggggggattggggtggacctagcaacagcttatagtttcctcttccctttttgccccagtctcttttaaagaactgtcttctagtaactagaagtgaaatgtactgtccagttacagtttgagtgggtatgagatttaactcaaaaggaatcttacaaaaaaaaagatgttttcttataaaatccaatttctgtaaatgttttctctgaagttcatactacctactttttattcattcttaatactgtataacattttgagtgttttgacttgttcagaggtttgttagtgttgctgtgcatatgtcttgaggtctcatctgaagtaagtttgtgtatgatcgaagatttcaatggatattgcaaggtaactaattaactgatttcataagttttcgttttgccaagctaacgattatcaattaagaatttcctctggttgatgttatacaagaaagcacaatattttttgcctgttgatcttctttgtaacagtcttcagatatttgtgggttaaaaattgaatgtaattttaagtgacagatgcctggaatacatttaaaatttttatttttccttcctaatcatccattaactattccactatcagtggagagtcatgaggatgctgagaaagtatgaatagcttcctgtcaccttctgacgttttgaaacttaaatatgtcttttcgttgatactgtgggattttctgtatttacttgacagtcatggaggatttggtatgacttgaccacaggtttagaccaaggctgagaagaacagaagggagaaattaatggcaaaacaaaaaatacacaaatctgcggttttggaattaatgaaacaagattcatctatttaaagaaatgttggtgttctaatacaaagcattattttcacttagagaaaattacttacttgctcccttctgtattgtaatattttgtattaagacatgatttaaaatgtctttctacccttatctcctctaaactgcaactgaagttgcaattcttcatcattagtattttaactctggcaaaggttatagaaagaaaaatggaaatatggtaggcctgtggtattcttaaaagctaagtcattagaactatgcagatccccaagtttaaaagtacaaatacagcaccagtagttagctttctagctgggggagaagacaggagatttttcttccacagatgtttattttgcttcctgataggtactgcagcaaagccatgttgatgtgtagatgcatgacttcctcactaagctgctgcacaccagctttgcctgcatgattcaaatttgtgcctcagtaaaattataaattattgcatgtcataccttgaataatggaaacggcaaacattaaacctgtgattacccataatgtactttaataataaaaaacatggcagccaggtgcagtagagtgcacctgtggtcaggaggctgaagtgggaagattgcttcaacctgtgagtttgagtcccgcctggtcaacagcgagaccccatgtgtctgtctgtctctctctttttttaaaggacagaggctaagctgtaaggttagcatggttctgcctgggctttgcttctgtgcttctgtgcaggctgagctgtaaggttagcatggttctgcctgggctttgcttctgcgcttctgtgcaggctgagctgtaaggttagcatggttctgcctgggctttgcttctgcgcttctgtgcaggctgagctgtaaggttagcatggttctgcctgggctttgcttctgcgcttctgtgctagcaggtgcccacaaaatgtctttttgaatttcttaatttttgggttctggatgcaattcgtgcacgccaagaaactacttgcttgtcagtattttaattctgtagtacatgtgtgtgaatatcagccagtacttacagtaggaggatgaacagaaaaactgagaagacctgtctttcaaaagatgggtttatccactttttaagggaaaaagtgacagtttggcatgggatttgaaaagtggaaattgtggaaaaattgagctgttgaagtcccacatataaccagatttaataaagcttcacatgtgaattagctccatatgtgtgtagaaggttgcttttatagcaggtccttaagtactccttttgaaattcctcctttttttttaagtcataccattacttctttggatatgaatgtcccaagtggtatctcctactgtagtatgaggaagaatggctgttaatgtattttttgaattttggtcttgtcttggcctggatcatatccagtcaccactatgcaacaaatgatgtgcactgggcaaggatatgatgggttatgaaagctgtatcttgtttgttttttcttttgcagtactccaagtggtctaaacaggaatgtcttgtaaaacctcaagactccctattgattattcccttacatatttatttacaatttatcagggtaattggtggtgccttatgaaaagtataactcgatttcttgatctttgagcatgttttgtgtttcttgtgttttctaaaagaatattagatatggttaattgcattacatctaaaagatttaaaaaattgtgtgtatgctcaggttccccacacccatacccaccctaacccctgtcatttacattggtggcaactttaaatggtaaccaagcaaaagtacattttgataatgagtattgataatcctgaggaaaactagtgagtatatgggagccacctttgacctgtgccaaagcagtttctaatttcatttgctaactataaaataaagaactgagccaaaataatttgatcagtggtgtgattagcctattatcattgctgagaatagtgtttttggagtgtgaagtgattcctgaagatttcacctgccttctgtttccagcaagaatccagtgatgaccaacacatttcctcacttttggttcttgagaagtttatccctttgcaacaaaccattaatagggaaaacaaggaaatgctttccctttctctttggcttcttaaagctcacaaccaattcagaccccaagttacttcagagaagcaaatggcaccttttccccattgccaaggatcccagcttatgcagatatgaaggacggatcatttctgaaaatgttaagactctgcttgcagtggacttggcctcagtttcatgaaatgtgtaactctgtatgtgtatgttaggaggagggttggttgaaagagcgggggcagggaggggaatctgattacctcttgggaaataattttcttgccaacaaaaagatacacttgaagtttcttaaggtggcaagtccattaaaaaaaaaaattgtgttggaccctcccagtttagatcaagtatttcttgggggtcttgctattgtggttgataccaataaatggaagatccagaatattttcatttaaagctcaaccattaattggaacatggtgaaacattgtacacattgtaaaagtagggaacagtacaaaagaatggaatcaaatactatattatgtgaataaactagagtgattttggaatttcactctcttcaccccttctcacttgtatgttctgtaaagtgtatttctactttggtaggaagaaagacttgatttaatatttc
//
ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:5927 -> Molecular function: GO:0003677 [DNA binding] evidence: IEA GeneID:5927 -> Molecular function: GO:0003682 [chromatin binding] evidence: IEA GeneID:5927 -> Molecular function: GO:0003700 [sequence-specific DNA binding transcription factor activity] evidence: TAS GeneID:5927 -> Molecular function: GO:0008270 [zinc ion binding] evidence: IEA GeneID:5927 -> Molecular function: GO:0016702 [oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen] evidence: IEA GeneID:5927 -> Molecular function: GO:0016706 [oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors] evidence: IEA GeneID:5927 -> Biological process: GO:0006366 [transcription from RNA polymerase II promoter] evidence: TAS GeneID:5927 -> Biological process: GO:0007275 [multicellular organismal development] evidence: IEA GeneID:5927 -> Biological process: GO:0016568 [chromatin modification] evidence: IEA GeneID:5927 -> Biological process: GO:0045893 [positive regulation of transcription, DNA-dependent] evidence: IDA GeneID:5927 -> Cellular component: GO:0005634 [nucleus] evidence: IDA GeneID:5927 -> Cellular component: GO:0005730 [nucleolus] evidence: IEA GeneID:5927 -> Cellular component: GO:0005737 [cytoplasm] evidence: IDA GeneID:5927 -> Cellular component: GO:0019907 [cyclin-dependent protein kinase activating kinase holoenzyme complex] evidence: IDA
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