2024-04-20 12:30:33, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001040712 8257 bp mRNA linear PRI 15-JUN-2013 DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, D (PTPRD), transcript variant 5, mRNA. ACCESSION NM_001040712 VERSION NM_001040712.2 GI:283484018 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 8257) AUTHORS Wu,J.H., Lemaitre,R.N., Manichaikul,A., Guan,W., Tanaka,T., Foy,M., Kabagambe,E.K., Djousse,L., Siscovick,D., Fretts,A.M., Johnson,C., King,I.B., Psaty,B.M., McKnight,B., Rich,S.S., Chen,Y.D., Nettleton,J.A., Tang,W., Bandinelli,S., Jacobs,D.R. Jr., Browning,B.L., Laurie,C.C., Gu,X., Tsai,M.Y., Steffen,L.M., Ferrucci,L., Fornage,M. and Mozaffarian,D. TITLE Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium JOURNAL Circ Cardiovasc Genet 6 (2), 171-183 (2013) PUBMED 23362303 REFERENCE 2 (bases 1 to 8257) AUTHORS Du,Y., Su,T., Tan,X., Li,X., Xie,J., Wang,G., Shen,J., Hou,J. and Cao,G. TITLE Polymorphism in protein tyrosine phosphatase receptor delta is associated with the risk of clear cell renal cell carcinoma JOURNAL Gene 512 (1), 64-69 (2013) PUBMED 23069849 REMARK GeneRIF: Polymorphism in protein tyrosine phosphatase receptor delta is associated with the risk of clear cell renal cell carcinoma. REFERENCE 3 (bases 1 to 8257) AUTHORS Meng,W., Butterworth,J., Bradley,D.T., Hughes,A.E., Soler,V., Calvas,P. and Malecaze,F. TITLE A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population JOURNAL Invest. Ophthalmol. Vis. Sci. 53 (13), 7983-7988 (2012) PUBMED 23049088 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 8257) AUTHORS Wilk,J.B., Shrine,N.R., Loehr,L.R., Zhao,J.H., Manichaikul,A., Lopez,L.M., Smith,A.V., Heckbert,S.R., Smolonska,J., Tang,W., Loth,D.W., Curjuric,I., Hui,J., Cho,M.H., Latourelle,J.C., Henry,A.P., Aldrich,M., Bakke,P., Beaty,T.H., Bentley,A.R., Borecki,I.B., Brusselle,G.G., Burkart,K.M., Chen,T.H., Couper,D., Crapo,J.D., Davies,G., Dupuis,J., Franceschini,N., Gulsvik,A., Hancock,D.B., Harris,T.B., Hofman,A., Imboden,M., James,A.L., Khaw,K.T., Lahousse,L., Launer,L.J., Litonjua,A., Liu,Y., Lohman,K.K., Lomas,D.A., Lumley,T., Marciante,K.D., McArdle,W.L., Meibohm,B., Morrison,A.C., Musk,A.W., Myers,R.H., North,K.E., Postma,D.S., Psaty,B.M., Rich,S.S., Rivadeneira,F., Rochat,T., Rotter,J.I., Artigas,M.S., Starr,J.M., Uitterlinden,A.G., Wareham,N.J., Wijmenga,C., Zanen,P., Province,M.A., Silverman,E.K., Deary,I.J., Palmer,L.J., Cassano,P.A., Gudnason,V., Barr,R.G., Loos,R.J., Strachan,D.P., London,S.J., Boezen,H.M., Probst-Hensch,N., Gharib,S.A., Hall,I.P., O'Connor,G.T., Tobin,M.D. and Stricker,B.H. TITLE Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction JOURNAL Am. J. Respir. Crit. Care Med. 186 (7), 622-632 (2012) PUBMED 22837378 REFERENCE 5 (bases 1 to 8257) AUTHORS Comuzzie,A.G., Cole,S.A., Laston,S.L., Voruganti,V.S., Haack,K., Gibbs,R.A. and Butte,N.F. TITLE Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population JOURNAL PLoS ONE 7 (12), E51954 (2012) PUBMED 23251661 REFERENCE 6 (bases 1 to 8257) AUTHORS Blanchetot,C., Tertoolen,L.G., Overvoorde,J. and den Hertog,J. TITLE Intra- and intermolecular interactions between intracellular domains of receptor protein-tyrosine phosphatases JOURNAL J. Biol. Chem. 277 (49), 47263-47269 (2002) PUBMED 12376545 REMARK GeneRIF: interactions between RPTP-domain1s and RPTP-domain 2s are a common but specific mechanism that is likely to be regulated- domain2s and the wedge structures are crucial determinants of binding specificity, thus regulating cross-talk between RPTPs REFERENCE 7 (bases 1 to 8257) AUTHORS Wallace,M.J., Fladd,C., Batt,J. and Rotin,D. TITLE The second catalytic domain of protein tyrosine phosphatase delta (PTP delta) binds to and inhibits the first catalytic domain of PTP sigma JOURNAL Mol. Cell. Biol. 18 (5), 2608-2616 (1998) PUBMED 9566880 REFERENCE 8 (bases 1 to 8257) AUTHORS Pulido,R., Serra-Pages,C., Tang,M. and Streuli,M. TITLE The LAR/PTP delta/PTP sigma subfamily of transmembrane protein-tyrosine-phosphatases: multiple human LAR, PTP delta, and PTP sigma isoforms are expressed in a tissue-specific manner and associate with the LAR-interacting protein LIP.1 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92 (25), 11686-11690 (1995) PUBMED 8524829 REFERENCE 9 (bases 1 to 8257) AUTHORS Pulido,R., Krueger,N.X., Serra-Pages,C., Saito,H. and Streuli,M. TITLE Molecular characterization of the human transmembrane protein-tyrosine phosphatase delta. Evidence for tissue-specific expression of alternative human transmembrane protein-tyrosine phosphatase delta isoforms JOURNAL J. Biol. Chem. 270 (12), 6722-6728 (1995) PUBMED 7896816 REFERENCE 10 (bases 1 to 8257) AUTHORS Krueger,N.X., Streuli,M. and Saito,H. TITLE Structural diversity and evolution of human receptor-like protein tyrosine phosphatases JOURNAL EMBO J. 9 (10), 3241-3252 (1990) PUBMED 2170109 COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from DR001889.1, AB208869.1, AL356584.21, AL590397.7, AL445926.5 and BM680342.1. On Jan 8, 2010 this sequence version replaced gi:104487001. Summary: The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. This PTP contains an extracellular region, a single transmembrane segment and two tandem intracytoplasmic catalytic domains, and thus represents a receptor-type PTP. The extracellular region of this protein is composed of three Ig-like and eight fibronectin type III-like domains. Studies of the similar genes in chicken and fly suggest the role of this PTP is in promoting neurite growth, and regulating neurons axon guidance. Multiple alternatively spliced transcript variants of this gene have been reported. A related pseudogene has been identified on chromosome 5. [provided by RefSeq, Jan 2010]. Transcript Variant: This variant (5) has multiple differences in the coding region, compared to variant 1, resulting in an isoform (5) that is shorter than isoform 1. The 5' UTR of this variant is incomplete because no 5' complete transcripts representing this variant exist, and there are alternate splicing choices in the upstream region. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support ERS025081, ERS025082 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-174 DR001889.1 76-249 175-1341 AB208869.1 1-1167 1342-1342 AL356584.21 17258-17258 c 1343-3126 AB208869.1 1169-2952 3127-3127 AL590397.7 136670-136670 c 3128-5562 AB208869.1 2954-5388 5563-7601 AL445926.5 119217-121255 c 7602-8257 BM680342.1 1-656 c FEATURES Location/Qualifiers source 1..8257 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="9" /map="9p23-p24.3" gene 1..8257 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="protein tyrosine phosphatase, receptor type, D" /db_xref="GeneID:5789" /db_xref="HGNC:9668" /db_xref="MIM:601598" exon 1..167 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" misc_feature 20..22 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="upstream in-frame stop codon" CDS 104..4612 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /EC_number="3.1.3.48" /note="isoform 5 precursor is encoded by transcript variant 5; protein tyrosine phosphatase, receptor type, delta polypeptide; receptor-type tyrosine-protein phosphatase delta; R-PTP-delta; protein-tyrosine phosphatase delta" /codon_start=1 /product="receptor-type tyrosine-protein phosphatase delta isoform 5 precursor" /protein_id="NP_001035802.1" /db_xref="GI:104487002" /db_xref="CCDS:CCDS55288.1" /db_xref="GeneID:5789" /db_xref="HGNC:9668" /db_xref="MIM:601598" /translation="
MVHVARLLLLLLTFFLRTDAETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSGGTPIRGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRELREVRRVPPRFSIPPTNHEIMPGGSVNITCVAVGSPMPYVKWMLGAEDLTPEDDMPIGRNVLELNDVRQSANYTCVAMSTLGVIEAIAQITVKALPKPPGTPVVTESTATSITLTWDSGNPEPVSYYIIQHKPKNSEELYKEIDGVATTRYSVAGLSPYSDYEFRVVAVNNIGRGPPSEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSMFAKNFHVKAVMKTSVLLSWEIPENYNSAMPFKILYDDGKMVEEVDGRATQKLIVNLKPEKSYSFVLTNRGNSAGGLQHRVTAKTAPDVLRTKPAFIGKTNLDGMITVQLPEVPANENIKGYYIIIVPLKKSRGKFIKPWESPDEMELDELLKEISRKRRSIRYGREVELKPYIAAHFDVLPTEFTLGDDKHYGGFTNKQLQSGQEYVFFVLAVMEHAESKMYATSPYSDPVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIICIVIAILLYKSKPDRKRAESDSRKSSIPNNKEIPSHHPTDPVELRRLNFQTPGMASHPPIPILELADHIERLKANDNLKFSQEYESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDGYRKQNAYIATQGSLPETFGDFWRMIWEQRSATVVMMTKLEERSRVKCDQYWPSRGTETHGLVQVTLLDTVELATYCVRTFALYKNGSSEKREVRQFQFTAWPDHGVPEHPTPFLAFLRRVKTCNPPDAGPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLMRAQRNYMVQTEDQYIFIHDALLEAVTCGNTEVPARNLYAYIQKLTQIETGENVTGMELEFKRLASSKAHTSRFISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDQYQFSYRAALEYLGSFDHYAT
" sig_peptide 104..163 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="COORDINATES: ab initio prediction:SignalP:4.0" mat_peptide 164..4609 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /product="receptor-type tyrosine-protein phosphatase delta isoform 5" misc_feature 173..448 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Immunoglobulin I-set domain; Region: I-set; pfam07679" /db_xref="CDD:191810" misc_feature 191..448 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Immunoglobulin; Region: IG; smart00409" /db_xref="CDD:197707" misc_feature 530..766 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR; Region: Ig2_RPTP_IIa_LAR_like; cd05738" /db_xref="CDD:143215" misc_feature 806..1051 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Immunoglobulin I-set domain; Region: I-set; pfam07679" /db_xref="CDD:191810" misc_feature 842..1048 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR; Region: Ig3_RPTP_IIa_LAR_like; cd05739" /db_xref="CDD:143216" misc_feature 1061..1330 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(1061..1063,1247..1249,1292..1294) /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature order(1295..1300,1304..1309) /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 1349..1627 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(1544..1546,1589..1591) /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature order(1592..1597,1601..1606) /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 1640..1906 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(1640..1642,1823..1825,1868..1870) /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature order(1871..1876,1880..1885) /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 1925..>2119 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature 2939..3706 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Protein tyrosine phosphatase, catalytic domain; Region: PTPc; smart00194" /db_xref="CDD:197567" misc_feature 3017..3706 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr; Region: PTPc; cd00047" /db_xref="CDD:28929" misc_feature order(3434..3436,3527..3532,3539..3541,3548..3553) /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="active site" /db_xref="CDD:28929" misc_feature 3800..4579 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Protein tyrosine phosphatase, catalytic domain; Region: PTPc; smart00194" /db_xref="CDD:197567" misc_feature 3887..4579 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr; Region: PTPc; cd00047" /db_xref="CDD:28929" misc_feature order(4301..4303,4400..4405,4412..4414,4421..4426) /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /note="active site" /db_xref="CDD:28929" exon 168..313 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 314..455 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 456..644 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" STS 612..874 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /standard_name="GDB:582179" /db_xref="UniSTS:157878" exon 645..662 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 663..773 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 774..785 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 786..1055 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 1056..1637 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" variation 1090 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /replace="c" /replace="t" /db_xref="dbSNP:3763653" STS 1622..1987 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /standard_name="GDB:582186" /db_xref="UniSTS:157880" exon 1638..1771 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 1772..1916 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 1917..2014 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 2015..2274 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 2275..2365 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 2366..2575 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 2576..2736 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 2737..2748 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 2749..2861 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 2862..2959 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 2960..3083 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 3084..3259 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 3260..3379 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 3380..3534 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 3535..3820 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 3821..3999 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" STS 3893..4111 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /standard_name="PTPRD" /db_xref="UniSTS:512659" exon 4000..4126 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" STS 4087..4592 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /standard_name="Ptprd" /db_xref="UniSTS:545976" exon 4127..4252 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 4253..4407 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 4408..4543 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" exon 4544..8240 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /inference="alignment:Splign:1.39.8" STS 4623..5063 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /standard_name="SGC35386" /db_xref="UniSTS:31522" variation 5513 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /replace="c" /replace="t" /db_xref="dbSNP:1051863" STS 5577..5595 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /db_xref="UniSTS:98954" variation 6208 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /replace="a" /replace="g" /db_xref="dbSNP:11542527" polyA_signal 6228..6233 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" polyA_site 6252 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" STS 6550..6730 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /standard_name="D9S1044E" /db_xref="UniSTS:151264" STS 6585..6757 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /standard_name="RH47322" /db_xref="UniSTS:12791" variation 6826 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /replace="a" /replace="g" /db_xref="dbSNP:1065682" STS 7186..7303 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /standard_name="A003M12" /db_xref="UniSTS:64813" STS 7249..7390 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /standard_name="G31002" /db_xref="UniSTS:79310" variation 7498 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" /replace="a" /replace="c" /db_xref="dbSNP:3739579" polyA_signal 8218..8223 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" polyA_site 8240 /gene="PTPRD" /gene_synonym="HPTP; HPTPD; HPTPDELTA; PTPD; RPTPDELTA" ORIGIN
gctctgaaagtgttccagctgaaatttcagatcggacagactcgctgcggctccggaggcagtgattccaagctgctcgcgcacgctgctgccaagctgcaggatggtgcacgtagccaggctgctgctgctgctcctcactttcttcctccgcacggatgctgagacacctccaaggtttacacgaacacccgttgatcagacaggggtctctggcggagttgcctctttcatctgccaagctacgggagacccaagacctaaaattgtctggaacaaaaaaggaaagaaagtcagcaatcagagatttgaggtaatagagtttgacgatgggtctggatcagttctcagaatacaacccttacggactccgagggatgaggccatttatgaatgtgtggcctcaaataatgtgggagaaataagtgtatccaccagactcacagttttgcgggaagatcaaattcccaggggcttccctaccattgacatgggcccacagttgaaggtggttgagcgtactcgcacggccaccatgctttgtgcagccagtggtaatccggatccagaaatcacttggtttaaagatttcttacctgtggacacaagcaacaacaatggtcgtattaagcagttacgatcaggtggtacaccaataagaggagcccttcagattgagcagagtgaagagtctgaccaaggaaaatatgagtgtgttgccaccaacagcgcgggcactcgctattccgctcctgccaatttatatgtcagagagctgcgagaagttcgccgtgtcccaccaagattctctatcccacccactaatcatgaaatcatgccaggcggaagcgttaatatcacctgtgtggccgtggggtcaccaatgccttatgtaaagtggatgttgggggcagaagatctgacacctgaagatgatatgccaataggaagaaatgtgctagaactgaatgatgtaagacagtcagcaaattacacctgtgttgctatgtcaacactgggtgtcattgaagcaatagcacagatcactgtcaaagccttacccaaacctccaggaactcctgtagtgaccgagagcacagctacaagcatcacactgacgtgggactctgggaaccctgagcctgtttcttattacataattcagcataaacctaaaaactctgaggaactttacaaagaaattgatggggtggcgaccacacgctacagtgtcgctggactaagtccctactcggattatgaattcagggttgttgctgtcaataacattgggcgggggcctcccagcgaacctgtgctaacacaaacctcagagcaagcaccatccagtgccccgagggatgtccaggcacgaatgttgagttcgaccaccattttggtacagtggaaggaacctgaagagccaaatggacagatccaaggatatagagtttattatacaatggatcccactcaacatgtcaacaactggatgaaacacaatgtagctgacagccaaatcactactattggcaacttagtgccccagaaaacatattctgtcaaagtcctggcttttacctcaattggagatggtcccctttcaagtgacatacaagtcatcactcagacaggagtaccagggcagccactaaacttcaaagcagaacctgagtctgaaacaagtattttgctctcttggacacctccacgttcagataccattgccaactatgaactggtctacaaagatggggagcatggagaggagcaacgaattaccattgagccagggacatcatataggctgcaaggactgaaaccaaacagcttatactatttccgtctggctgcacgctcccctcaaggcctgggtgcttctactgcagaaatatcagctagaaccatgcagtcaatgtttgcaaaaaattttcatgtcaaagcagtaatgaagacttccgtgttgctgtcttgggagattccagagaattataactccgccatgcctttcaaaattctttatgatgatgggaaaatggtagaagaagtggatggccgagccacacagaagttaattgtcaacctgaagcctgagaaatcatattcatttgtgctgacaaatcgtggaaacagtgctggtgggctgcagcacagggtcacggcaaagactgcaccagatgtattacgtaccaagcctgccttcattgggaagaccaacttggatggcatgattactgtgcaactgcctgaagtacctgcaaatgagaatataaaaggttactacataataattgtgcctttgaagaaatctcgcgggaaatttatcaagccatgggagagtccagatgaaatggaattagatgagctgcttaaggagatatctaggaagcgcagaagcatccgttatgggagagaagttgaattaaagccatatattgccgctcactttgatgtccttcccactgagttcaccctgggggatgacaagcattatggtggatttacaaacaagcaactccaaagtggtcaagaatatgtcttctttgtgttagcagtaatggaacatgcagagtctaagatgtatgcaaccagcccttactccgaccccgtggtgtcaatggatctggatccgcagccaatcacggatgaagaagaaggcttgatctgggttgtaggtcctgtccttgcagtggtctttatcatctgcattgtcattgctattcttctttataaaagtaaacccgacaggaagagggcagagtccgactctagaaaaagcagcataccgaacaataaggagatcccttcacaccacccaacagaccctgtagaactgaggcgccttaactttcaaacaccgggtatggctagccatcctccaatacccatcttggaacttgcagaccacattgaaagattgaaagcaaatgacaacttgaagttttcccaggaatatgagtcaattgaccctggccagcagttcacttgggaacattcaaacttggaagtaaacaaaccaaagaatagatacgcgaatgtaatcgcatatgatcattcccgggttctcctatcagctatagaagggatcccaggaagtgactatgtgaatgccaactacatagatgggtataggaagcaaaatgcctatattgcaacacagggatctctccccgaaacatttggggacttttggagaatgatatgggaacaacggagtgccacagttgtcatgatgacaaaactagaagaaagatcaagggtgaagtgtgaccagtattggcctagcagaggcacagaaacccacggactcgttcaagtaacgctgcttgatactgtggagctggccacatattgtgttcgaacatttgcactttacaagaatggttcaagtgagaagagagaagtgagacaattccagttcaccgcctggcctgatcatggtgttccagaacaccctacaccttttctagctttcttacgtagagtcaaaacctgtaaccctcccgatgctggtccgatggttgtgcactgcagtgcgggagttggccggactggttgcttcatcgtcatagatgccatgttagaaagaataaagcatgaaaaaactgtagatatttatggccatgtaactttaatgagagcccagaggaactatatggttcaaacagaagaccaatacatctttatccatgatgcactgttagaagcagtgacttgtggaaataccgaagtgccagctagaaacttgtatgcctacattcagaagctgacacaaatagaaacgggagagaatgtcacaggaatggagctcgaatttaagcgtctagccagctcaaaagctcacacctcaaggtttatcagtgccaatcttccatgtaataaattcaaaaatcgccttgttaatattatgccatatgaatccacaagggtatgcctgcagcctatccgtggagtagaaggatctgattacatcaatgccagttttattgatggatacagacaacagaaagcctacatcgctacccaggggcccttggcagagaccactgaagacttctggcggatgctctgggaacacaattccaccatagttgtgatgctcaccaagctgcgtgaaatgggcagagagaaatgtcaccaatactggccagcagaacggtctgcaagataccagtactttgttgtagatcccatggctgagtacaacatgccacagtatatcctaagggaattcaaggtcacagatgccagggacggccagtcccgaacagtaaggcagttccagttcactgactggccagagcaaggagtgccaaagtccggagaaggatttattgacttcatcggccaagtccataaaacaaaagaacagtttggccaagatggacccatttcagtccattgcagcgcgggcgttggaagaactggagtcttcataacgctaagcattgttttggaaagaatgagatatgaaggagttgtagatatcttccagactgtcaaaatgttaagaacacaacgaccagctatggtacagacagaggatcaatatcagttttcctatcgtgccgcactagagtacctgggcagctttgaccactatgcaacgtagaaacccctgacccattctggatttttactacaggcccttcaatatccatggagtctcttctgagccatacagggcacttgagaagtccttcttaacttctagctaacaactacttagtgggactattacacacaaaacaaattaaaaacaaattattccaggtggaccaagaattcacagtttaataatctaacctgaaaaataatgaagagaatcctgactgatgaggcatctgaaggattttatttacagatacctcaaggattcaaaatcaagggaagaagaaatcacagcaaagaaccaccatcttattcaggattgcttgaaaggtgcaaggagaaattgccagaatgctgcagttcagcacaagatatgtgctggtgtggcttctcacaatgaaacggactctgctttgacatcgccccttcccaccatactgctcataataacattttagggggaaaggggagggaatgtttaaaaagaaagtccttgatttagttttttagtattgtaaagatactgctgacctgtgcttcatttctaactgtgtaaacttttttttaacaaaatgtatcattcgataaagtgaattttaaaaaagttacataactcttcatttttttatttccaaatcgtaggtttttttaagctgtagaactgttatctgtaatatcttgctgtagaaatatcaaatcatttgaaaatttgcacatttttgtgcaaaactcaatctacagtatcagtctcgtcagatatattaattttacacttcagttttgattggtgagaaagtacccattctcttcaaataatcaaagataattattattttgttttgtttttggaatcaacagggaggcgcaaagtataaagttgctgctaacatatatacatatatatccatattttataagggtgtctatgtatatatagacagtgtgtccacacaaaaaatagatacagttatcagtcagtcagttcttccatgatttagtttttttaaacgtagaaaagctattgtaaacatctctttccatttattcttaattttttgacatattggtatttctttaaagggaaatgaggaatgcacatcagtgattgattgtcaaacctcaccccctgatttcctacctaatctacccccacctaaccaatcaatcacatccacaaattgttttgtttgtttgttagtcaggcttccaacaaagttcaatatttctaacactctagtgcaataaaaattattattaaatagctaagaggtgtgcatgtgggaaaggtcagtgcatatccctttaggaggggagaatgttgtaatatatcagctatcgagttgtttaaaaaaagtgtattcaatcgtatattgtctatagtatgtgctatgaaatttgcatttatgatatgtaacaggggcaaagccaaattcatgttactctgttcagtcagaaacattttgtggcatacagcattcctgggaagtgctgtactttgtttcgttttggttttagttttgcatttagagtgccttataattgatgcctattttaatagcatttctttttagcttttggttcgtatttccattcactgttcgtatctgttactttctattaaagcattatctgtttaccacatgtacaaaaactctttgaataatatgcattcctagttttcagccaagtcggggatgttagtgattgtaccagcccaaagcacttggataatcagggcccttcttccttttataatcaatcatcaacatcagaaaaagctacttgttttatttatattcccttccaaatccgctctggaacatgcagtaactgcaccaaacttattttagtaacaaatatcattggcaactttggaatatatttgatattccattaggatttttctaaaaggggaaataaactatatatatatatgtatcttacccccaattcttccaacagaatttctataggaagccatggatgatggcataagtttgccacatattacatgattttaaataatcctcaaaatacccaaggaactcttaaagagttttggtatgagtatactactttggtttaattttagcttcatggatgttctgcatggaaggatttttgttttccacattttcccattgctagcagagtgaaatccaagagaccaaacatttgcaagcattgtatttgagcacttttgtaaaaaacaaagaaaaagaaaaaaaagaaaatatatataatactaaaaaaaagtatctagaaggctacctcagaatgagactctctaacctacatcagaaccagagaagaatgtgcactatgtgggtctgttatcattattttcttttagtttgtatctttttggagatttatccaagtgccagattactcagtgctataattttcttttagttaaacaaagggggtcagacagacattgcatcatccagacatgccttgttggacatgtagaatccgatggagcactgcacaccagaatgattggccaatgagcagcttctctccctgaaacaataactgcccatttggcaaagggaaagatgacaataatcagaagaagaaaatgaatgggatgcataccatagacgaacgaggcggagactattgcgggaatcttactgttcaggagctgttcctagaactaactcccttactgtcattgatgtgcattccactctgtgcttttctgtacaaccattcaagttttaatttcccaggtgaaccatctttatctgccattaccacaagctttcaagtttccagttattttcatcatcataaccagtacggtgctattatttacctatgtacgtgtagttatgtataattttgtaattagttacaatggtaaaaaaaatcaaaatatataaaaagtgatttgtacagaactttattttagctcttttttaaaaatgatttgcatggttagaaaacggcgaggacagccaggggagggaagggcctctagggaactttgcactttctatacctttgtactatgcactgccctattgattctacacccaataatgatattacttgaacccatctgtaagaaactgcttcggaaattcatttgtgtgtatgtaaataacacaacatagaaacaggaagggaaaaaagtctgcagtaatgcacgtattttttttctttcctgtttattttcggttttgctttaagtccttttatttttaattccctttttgtttttctttttgggttttggttccttttgggtttatgggtgccctgatactccagcagagatcagaaggctacagatccattctatccatccgttatgtggctttgccatcccagcttggagtgtctttacaaagataataacagttgtgttctttgctctcgttttggatgcatagactgaaaaattaaaacaaataacttgtaaaatggcttgttaaaaaatacaattacctctaattagtagtacgcgtaaatgttttacagaatgaaaggcgtgctttttattttcttacttcgttacattggtggcgaaagaagtctgtatgaaaatcagttctttgctgacacaagttccatttgttacaaatgaattctaataaaaatgtcagtgttatgcaaaaaaaaaaaaaaaaaa
//
ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:5789 -> Molecular function: GO:0005001 [transmembrane receptor protein tyrosine phosphatase activity] evidence: TAS GeneID:5789 -> Molecular function: GO:0005102 [receptor binding] evidence: ISS GeneID:5789 -> Molecular function: GO:0005515 [protein binding] evidence: IPI GeneID:5789 -> Molecular function: GO:0050839 [cell adhesion molecule binding] evidence: ISS GeneID:5789 -> Biological process: GO:0006470 [protein dephosphorylation] evidence: TAS GeneID:5789 -> Biological process: GO:0006796 [phosphate-containing compound metabolic process] evidence: NAS GeneID:5789 -> Biological process: GO:0007157 [heterophilic cell-cell adhesion] evidence: ISS GeneID:5789 -> Biological process: GO:0007185 [transmembrane receptor protein tyrosine phosphatase signaling pathway] evidence: TAS GeneID:5789 -> Biological process: GO:0030182 [neuron differentiation] evidence: ISS GeneID:5789 -> Biological process: GO:0050775 [positive regulation of dendrite morphogenesis] evidence: ISS GeneID:5789 -> Biological process: GO:0097105 [presynaptic membrane assembly] evidence: ISS GeneID:5789 -> Cellular component: GO:0005887 [integral to plasma membrane] evidence: TAS ANNOTATIONS from NCBI Entrez Gene (20130726): NP_001035802 -> EC 3.1.3.48
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