2024-04-27 08:36:23, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001006682 1224 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens spindlin family, member 2B (SPIN2B), transcript variant 2, mRNA. ACCESSION NM_001006682 VERSION NM_001006682.1 GI:56682946 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1224) AUTHORS Zhang,B., Abreu,J.G., Zhou,K., Chen,Y., Hu,Y., Zhou,T., He,X. and Ma,J.X. TITLE Blocking the Wnt pathway, a unifying mechanism for an angiogenic inhibitor in the serine proteinase inhibitor family JOURNAL Proc. Natl. Acad. Sci. U.S.A. 107 (15), 6900-6905 (2010) PUBMED 20351274 REMARK GeneRIF: SERPINA3K is a high-affinity, endogenous antagonist of LRP6 REFERENCE 2 (bases 1 to 1224) AUTHORS Lamesch,P., Li,N., Milstein,S., Fan,C., Hao,T., Szabo,G., Hu,Z., Venkatesan,K., Bethel,G., Martin,P., Rogers,J., Lawlor,S., McLaren,S., Dricot,A., Borick,H., Cusick,M.E., Vandenhaute,J., Dunham,I., Hill,D.E. and Vidal,M. TITLE hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes JOURNAL Genomics 89 (3), 307-315 (2007) PUBMED 17207965 REFERENCE 3 (bases 1 to 1224) AUTHORS Ross,M.T., Grafham,D.V., Coffey,A.J., Scherer,S., McLay,K., Muzny,D., Platzer,M., Howell,G.R., Burrows,C., Bird,C.P., Frankish,A., Lovell,F.L., Howe,K.L., Ashurst,J.L., Fulton,R.S., Sudbrak,R., Wen,G., Jones,M.C., Hurles,M.E., Andrews,T.D., Scott,C.E., Searle,S., Ramser,J., Whittaker,A., Deadman,R., Carter,N.P., Hunt,S.E., Chen,R., Cree,A., Gunaratne,P., Havlak,P., Hodgson,A., Metzker,M.L., Richards,S., Scott,G., Steffen,D., Sodergren,E., Wheeler,D.A., Worley,K.C., Ainscough,R., Ambrose,K.D., Ansari-Lari,M.A., Aradhya,S., Ashwell,R.I., Babbage,A.K., Bagguley,C.L., Ballabio,A., Banerjee,R., Barker,G.E., Barlow,K.F., Barrett,I.P., Bates,K.N., Beare,D.M., Beasley,H., Beasley,O., Beck,A., Bethel,G., Blechschmidt,K., Brady,N., Bray-Allen,S., Bridgeman,A.M., Brown,A.J., Brown,M.J., Bonnin,D., Bruford,E.A., Buhay,C., Burch,P., Burford,D., Burgess,J., Burrill,W., Burton,J., Bye,J.M., Carder,C., Carrel,L., Chako,J., Chapman,J.C., Chavez,D., Chen,E., Chen,G., Chen,Y., Chen,Z., Chinault,C., Ciccodicola,A., Clark,S.Y., Clarke,G., Clee,C.M., Clegg,S., Clerc-Blankenburg,K., Clifford,K., Cobley,V., Cole,C.G., Conquer,J.S., Corby,N., Connor,R.E., David,R., Davies,J., Davis,C., Davis,J., Delgado,O., Deshazo,D., Dhami,P., Ding,Y., Dinh,H., Dodsworth,S., Draper,H., Dugan-Rocha,S., Dunham,A., Dunn,M., Durbin,K.J., Dutta,I., Eades,T., Ellwood,M., Emery-Cohen,A., Errington,H., Evans,K.L., Faulkner,L., Francis,F., Frankland,J., Fraser,A.E., Galgoczy,P., Gilbert,J., Gill,R., Glockner,G., Gregory,S.G., Gribble,S., Griffiths,C., Grocock,R., Gu,Y., Gwilliam,R., Hamilton,C., Hart,E.A., Hawes,A., Heath,P.D., Heitmann,K., Hennig,S., Hernandez,J., Hinzmann,B., Ho,S., Hoffs,M., Howden,P.J., Huckle,E.J., Hume,J., Hunt,P.J., Hunt,A.R., Isherwood,J., Jacob,L., Johnson,D., Jones,S., de Jong,P.J., Joseph,S.S., Keenan,S., Kelly,S., Kershaw,J.K., Khan,Z., Kioschis,P., Klages,S., Knights,A.J., Kosiura,A., Kovar-Smith,C., Laird,G.K., Langford,C., Lawlor,S., Leversha,M., Lewis,L., Liu,W., Lloyd,C., Lloyd,D.M., Loulseged,H., Loveland,J.E., Lovell,J.D., Lozado,R., Lu,J., Lyne,R., Ma,J., Maheshwari,M., Matthews,L.H., McDowall,J., McLaren,S., McMurray,A., Meidl,P., Meitinger,T., Milne,S., Miner,G., Mistry,S.L., Morgan,M., Morris,S., Muller,I., Mullikin,J.C., Nguyen,N., Nordsiek,G., Nyakatura,G., O'Dell,C.N., Okwuonu,G., Palmer,S., Pandian,R., Parker,D., Parrish,J., Pasternak,S., Patel,D., Pearce,A.V., Pearson,D.M., Pelan,S.E., Perez,L., Porter,K.M., Ramsey,Y., Reichwald,K., Rhodes,S., Ridler,K.A., Schlessinger,D., Schueler,M.G., Sehra,H.K., Shaw-Smith,C., Shen,H., Sheridan,E.M., Shownkeen,R., Skuce,C.D., Smith,M.L., Sotheran,E.C., Steingruber,H.E., Steward,C.A., Storey,R., Swann,R.M., Swarbreck,D., Tabor,P.E., Taudien,S., Taylor,T., Teague,B., Thomas,K., Thorpe,A., Timms,K., Tracey,A., Trevanion,S., Tromans,A.C., d'Urso,M., Verduzco,D., Villasana,D., Waldron,L., Wall,M., Wang,Q., Warren,J., Warry,G.L., Wei,X., West,A., Whitehead,S.L., Whiteley,M.N., Wilkinson,J.E., Willey,D.L., Williams,G., Williams,L., Williamson,A., Williamson,H., Wilming,L., Woodmansey,R.L., Wray,P.W., Yen,J., Zhang,J., Zhou,J., Zoghbi,H., Zorilla,S., Buck,D., Reinhardt,R., Poustka,A., Rosenthal,A., Lehrach,H., Meindl,A., Minx,P.J., Hillier,L.W., Willard,H.F., Wilson,R.K., Waterston,R.H., Rice,C.M., Vaudin,M., Coulson,A., Nelson,D.L., Weinstock,G., Sulston,J.E., Durbin,R., Hubbard,T., Gibbs,R.A., Beck,S., Rogers,J. and Bentley,D.R. TITLE The DNA sequence of the human X chromosome JOURNAL Nature 434 (7031), 325-337 (2005) PUBMED 15772651 REFERENCE 4 (bases 1 to 1224) AUTHORS Fletcher,B.S., Dragstedt,C., Notterpek,L. and Nolan,G.P. TITLE Functional cloning of SPIN-2, a nuclear anti-apoptotic protein with roles in cell cycle progression JOURNAL Leukemia 16 (8), 1507-1518 (2002) PUBMED 12145692 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BQ221120.1 and BC000044.2. Transcript Variant: This variant (2) has an alternate internal segment in the 5' UTR, as compared to variant 1. Variants 1, 2 and 3 encode the same protein. ##Evidence-Data-START## Transcript exon combination :: BC000044.2, BE731164.1 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025082, ERS025083 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-55 BQ221120.1 13-67 56-1224 BC000044.2 1-1169 FEATURES Location/Qualifiers source 1..1224 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="X" /map="Xp11.1" gene 1..1224 /gene="SPIN2B" /gene_synonym="dJ323P24.2; SPIN-2; SPIN2_duplicate" /note="spindlin family, member 2B" /db_xref="GeneID:474343" /db_xref="HGNC:33147" /db_xref="HPRD:18662" /db_xref="MIM:300517" exon 1..254 /gene="SPIN2B" /gene_synonym="dJ323P24.2; SPIN-2; SPIN2_duplicate" /inference="alignment:Splign:1.39.8" misc_feature 236..238 /gene="SPIN2B" /gene_synonym="dJ323P24.2; SPIN-2; SPIN2_duplicate" /note="upstream in-frame stop codon" exon 255..1207 /gene="SPIN2B" /gene_synonym="dJ323P24.2; SPIN-2; SPIN2_duplicate" /inference="alignment:Splign:1.39.8" CDS 260..1036 /gene="SPIN2B" /gene_synonym="dJ323P24.2; SPIN-2; SPIN2_duplicate" /note="telomeric SPIN2 copy; spindlin family, member 2 duplicate; SPIN-2B; spindlin-like protein 2B" /codon_start=1 /product="spindlin-2B" /protein_id="NP_001006683.1" /db_xref="GI:56682947" /db_xref="CCDS:CCDS35311.1" /db_xref="GeneID:474343" /db_xref="HGNC:33147" /db_xref="HPRD:18662" /db_xref="MIM:300517" /translation="
MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKKS
" misc_feature 407..553 /gene="SPIN2B" /gene_synonym="dJ323P24.2; SPIN-2; SPIN2_duplicate" /note="Spin/Ssty Family; Region: Spin-Ssty; pfam02513" /db_xref="CDD:145577" misc_feature 644..790 /gene="SPIN2B" /gene_synonym="dJ323P24.2; SPIN-2; SPIN2_duplicate" /note="Spin/Ssty Family; Region: Spin-Ssty; pfam02513" /db_xref="CDD:145577" misc_feature 887..1021 /gene="SPIN2B" /gene_synonym="dJ323P24.2; SPIN-2; SPIN2_duplicate" /note="Spin/Ssty Family; Region: Spin-Ssty; pfam02513" /db_xref="CDD:145577" variation 1193 /gene="SPIN2B" /gene_synonym="dJ323P24.2; SPIN-2; SPIN2_duplicate" /replace="c" /replace="t" /db_xref="dbSNP:1736862" variation 1199 /gene="SPIN2B" /gene_synonym="dJ323P24.2; SPIN-2; SPIN2_duplicate" /replace="a" /replace="t" /db_xref="dbSNP:1736863" variation 1200 /gene="SPIN2B" /gene_synonym="dJ323P24.2; SPIN-2; SPIN2_duplicate" /replace="a" /replace="g" /db_xref="dbSNP:1736864" polyA_site 1205 /gene="SPIN2B" /gene_synonym="dJ323P24.2; SPIN-2; SPIN2_duplicate" ORIGIN
gagactgccgcggcgacagcagggactggtggaatcccgatgtggctgaggggccgccaccgccagcagggaggcggagggctagcgagccaagcggtggggacgccgctgccttcctctttgcctgtctcgccgccctcctagacacgctcctcatctacggatcctaccctccccgctcttgcaagcattcactcggccggtcgcctgctgaccctccttcgccacaggctcgtagcggaggcagcagcgagcaggcatgaagacccccaacgcacaggaagccgaagggcaacaaaccagggcagctgcaggacgggccactgggtctgcaaacatgacaaagaaaaaagtctcccaaaagaagcagagaggccgaccttcatcccagccccgcaggaacatcgtgggctgcagaatttctcatggatggaaggaaggagatgagcccatcacgcagtggaaaggaaccgttctggatcaggtgcctataaatccctctctttatctggtgaaatatgatggaattgactgtgtctatggactggaacttcacagagatgaaagggttttgtctcttaaaattctttctgacagggtggcatcatctcacattagtgatgccaaccttgcaaataccataattggcaaagcagtggaacatatgtttgagggagagcatggttctaaggatgaatggagggggatggtcttagctcaagcacctatcatgaaagcctggttttatattacctatgagaaagatcctgtcttgtacatgtaccagcttctagatgattataaggaaggtgacctccgcatcatgccagaatccagtgagtctcctccaacagagagggagccaggaggagttgtagatggcctaataggtaagcatgtggaatataccaaagaagatggctccaaaaggatcggcatggtcattcaccaagtggaagccaaaccctctgtgtatttcatcaagtttgatgatgatttccatatctatgtctacgatttggtgaaaaagtcctaactgttagggtaaaatttggcacatgtgtggaaacaaatgtataatttgtagacatgcaaaaaatgttgcctttcagtgtattgaaagcttatggaatccctgataactaaacatctttgccagcattaactgttgttttgctctaaaaaatacaaacttgtgtgtacatgaaaaaaaaaaaaaaaaaa
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ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:474343 -> Biological process: GO:0006915 [apoptotic process] evidence: IEA GeneID:474343 -> Biological process: GO:0007049 [cell cycle] evidence: IEA GeneID:474343 -> Biological process: GO:0007276 [gamete generation] evidence: IEA GeneID:474343 -> Cellular component: GO:0005634 [nucleus] evidence: IEA
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