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2024-03-29 19:51:58, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_000246               4654 bp    mRNA    linear   PRI 15-JUL-2013
DEFINITION  Homo sapiens class II, major histocompatibility complex,
            transactivator (CIITA), mRNA.
ACCESSION   NM_000246
VERSION     NM_000246.3  GI:156938335
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4654)
  AUTHORS   Vargas-Alarcon,G., Martinez-Rios,M.A., Pena-Duque,M.A.,
            Posadas-Romero,C., Cardoso-Saldana,G., Vallejo,M.,
            Ramirez-Bello,J., Perez-Mendez,O. and Fragoso,J.M.
  TITLE     The MHC2TA 1614 C>G gene polymorphism is associated with risk of
            developing acute coronary syndrome
  JOURNAL   Mol. Immunol. 55 (3-4), 424-428 (2013)
   PUBMED   23511026
  REMARK    GeneRIF: MHC2TA 1614 gene polymorphism could be involved in the
            risk of developing acute coronary syndrome
REFERENCE   2  (bases 1 to 4654)
  AUTHORS   Gyllenberg A, Asad S, Piehl F, Swanberg M, Padyukov L, Van Yserloo
            B, Rutledge EA, McNeney B, Graham J, Orho-Melander M, Lindholm E,
            Graff C, Forsell C, Akesson K, Landin-Olsson M, Carlsson A,
            Forsander G, Ivarsson SA, Larsson H, Lindblad B, Ludvigsson J,
            Marcus C, Lernmark A, Alfredsson L, Akesson K, Olsson T and Kockum
            I.
  CONSRTM   Swedish Childhood Diabetes Study Group; Diabetes Incidence in
            Sweden Study Group; Better Diabetes Diagnosis Study group
  TITLE     Age-dependent variation of genotypes in MHC II transactivator gene
            (CIITA) in controls and association to type 1 diabetes
  JOURNAL   Genes Immun. 13 (8), 632-640 (2012)
   PUBMED   23052709
  REMARK    GeneRIF: A significant correlation has been found in the genotype
            distribution for markers in CIITA (rs11074932 and rs3087456) and
            the development of type 1 diabetes in the Swedish cohort.
REFERENCE   3  (bases 1 to 4654)
  AUTHORS   Delgadillo,H., Vargas-Alarcon,G., Gomez-Monterrosas,O.,
            Martinez-Rodriguez,N., Ramirez-Fuentes,S., Carrillo-Sanchez,S.,
            Pena-Duque,M.A., Martinez-Rios,M.A., Perez-Mendez,O. and
            Fragoso,J.M.
  TITLE     The MHC2TA gene polymorphisms are not associated with restenosis
            after coronary stenting in Mexican patients
  JOURNAL   Arch Cardiol Mex 82 (3), 208-213 (2012)
   PUBMED   23021357
  REMARK    GeneRIF: The present study suggests that the MHC2TA polymorphisms
            are not involved in the risk of developing restenosis after
            coronary stent placement
REFERENCE   4  (bases 1 to 4654)
  AUTHORS   Swanberg,M., McGuigan,F.E., Ivaska,K.K., Gerdhem,P. and Akesson,K.
  TITLE     Polymorphisms in the inflammatory genes CIITA, CLEC16A and IFNG
            influence BMD, bone loss and fracture in elderly women
  JOURNAL   PLoS ONE 7 (10), E47964 (2012)
   PUBMED   23133532
  REMARK    GeneRIF: Polymorphisms in the inflammatory genes CIITA, CLEC16A and
            IFNG influence BMD, bone loss and fracture in elderly women
REFERENCE   5  (bases 1 to 4654)
  AUTHORS   Dominguez-Mozo,M.I., Garcia-Montojo,M., De Las Heras,V.,
            Garcia-Martinez,A., Arias-Leal,A.M., Casanova,I., Arroyo,R. and
            Alvarez-Lafuente,R.
  TITLE     MHC2TA mRNA levels and human herpesvirus 6 in multiple sclerosis
            patients treated with interferon beta along two-year follow-up
  JOURNAL   BMC Neurol 12, 107 (2012)
   PUBMED   23009575
  REMARK    GeneRIF: In multiple sclerosis patients, MHC2TA mRNA levels could
            be decreased by the active replication of HHV-6; the absence of
            HHV-6 in serum and the increase of MHC2TA expression could be
            studied as markers of good clinical response to IFN-beta treatment.
            Publication Status: Online-Only
REFERENCE   6  (bases 1 to 4654)
  AUTHORS   Riley,J.L., Westerheide,S.D., Price,J.A., Brown,J.A. and Boss,J.M.
  TITLE     Activation of class II MHC genes requires both the X box region and
            the class II transactivator (CIITA)
  JOURNAL   Immunity 2 (5), 533-543 (1995)
   PUBMED   7749984
REFERENCE   7  (bases 1 to 4654)
  AUTHORS   Steimle,V., Otten,L.A., Zufferey,M. and Mach,B.
  TITLE     Complementation cloning of an MHC class II transactivator mutated
            in hereditary MHC class II deficiency (or bare lymphocyte syndrome)
  JOURNAL   Cell 75 (1), 135-146 (1993)
   PUBMED   8402893
REFERENCE   8  (bases 1 to 4654)
  AUTHORS   Mann,D.M. and Yates,P.O.
  TITLE     A quantitative study of the glia of the Purkinje cell layer of the
            cerebellum in mammals
  JOURNAL   Neuropathol. Appl. Neurobiol. 5 (1), 71-76 (1979)
   PUBMED   107465
REFERENCE   9  (bases 1 to 4654)
  AUTHORS   Pereira,S.N., Castagna,R.C., Gressler,J.F., Marques,R.S. and
            Costa,P.S.
  TITLE     [Dura-mater valve bank]
  JOURNAL   Arq. Bras. Cardiol. 29 (4), 277-280 (1976)
   PUBMED   1008718
REFERENCE   10 (bases 1 to 4654)
  AUTHORS   Poschlova,N., Masek,K. and Krsiak,M.
  TITLE     Effect of 5,6-dihydroxytryptamine on social behaviour in mice
            [proceedings]
  JOURNAL   Act Nerv Super (Praha) 18 (3), 229-230 (1976)
   PUBMED   1007865
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from BE247223.1, X74301.1,
            AY699071.1 and AC133065.3.
            This sequence is a reference standard in the RefSeqGene project.
            On Sep 6, 2007 this sequence version replaced gi:73747680.
            
            Summary: This gene encodes a protein with an acidic transcriptional
            activation domain, 4 LRRs (leucine-rich repeats) and a GTP binding
            domain. The protein is located in the nucleus and acts as a
            positive regulator of class II major histocompatibility complex
            gene transcription, and is referred to as the 'master control
            factor' for the expression of these genes. The protein also binds
            GTP and uses GTP binding to facilitate its own transport into the
            nucleus. Once in the nucleus it does not bind DNA but rather uses
            an intrinsic acetyltransferase (AT) activity to act in a
            coactivator-like fashion. Mutations in this gene have been
            associated with bare lymphocyte syndrome type II (also known as
            hereditary MHC class II deficiency or HLA class II-deficient
            combined immunodeficiency), increased susceptibility to rheumatoid
            arthritis, multiple sclerosis, and possibly myocardial infarction.
            [provided by RefSeq, Jul 2008].
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The extent of this transcript is
            supported by transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X74301.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           ERS025084, ERS025088 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-78                BE247223.1         2-79
            79-1631             X74301.1           61-1613
            1632-2065           AY699071.1         1430-1863
            2066-2553           X74301.1           2048-2535
            2554-2660           AY699071.1         2352-2458
            2661-2831           X74301.1           2643-2813
            2832-2832           AC133065.3         88985-88985
            2833-3632           X74301.1           2815-3614
            3633-4654           AC133065.3         103877-104898
FEATURES             Location/Qualifiers
     source          1..4654
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="16"
                     /map="16p13"
     gene            1..4654
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /note="class II, major histocompatibility complex,
                     transactivator"
                     /db_xref="GeneID:4261"
                     /db_xref="HGNC:7067"
                     /db_xref="MIM:600005"
     exon            1..185
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       19
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:189636033"
     misc_feature    38..40
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /note="upstream in-frame stop codon"
     variation       50
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:45519531"
     variation       88
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:115659359"
     variation       101
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:374651761"
     variation       102
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:377607198"
     variation       106
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:370949865"
     CDS             134..3526
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /note="NLR family, acid domain containing;
                     nucleotide-binding oligomerization domain, leucine rich
                     repeat and acid domain containing; MHC class II
                     transactivator type III"
                     /codon_start=1
                     /product="MHC class II transactivator"
                     /protein_id="NP_000237.2"
                     /db_xref="GI:156938336"
                     /db_xref="CCDS:CCDS10544.1"
                     /db_xref="GeneID:4261"
                     /db_xref="HGNC:7067"
                     /db_xref="MIM:600005"
                     /translation="
MRCLAPRPAGSYLSEPQGSSQCATMELGPLEGGYLELLNSDADPLCLYHFYDQMDLAGEEEIELYSEPDTDTINCDQFSRLLCDMEGDEETREAYANIAELDQYVFQDSQLEGLSKDIFKHIGPDEVIGESMEMPAEVGQKSQKRPFPEELPADLKHWKPAEPPTVVTGSLLVGPVSDCSTLPCLPLPALFNQEPASGQMRLEKTDQIPMPFSSSSLSCLNLPEGPIQFVPTISTLPHGLWQISEAGTGVSSIFIYHGEVPQASQVPPPSGFTVHGLPTSPDRPGSTSPFAPSATDLPSMPEPALTSRANMTEHKTSPTQCPAAGEVSNKLPKWPEPVEQFYRSLQDTYGAEPAGPDGILVEVDLVQARLERSSSKSLERELATPDWAERQLAQGGLAEVLLAAKEHRRPRETRVIAVLGKAGQGKSYWAGAVSRAWACGRLPQYDFVFSVPCHCLNRPGDAYGLQDLLFSLGPQPLVAADEVFSHILKRPDRVLLILDGFEELEAQDGFLHSTCGPAPAEPCSLRGLLAGLFQKKLLRGCTLLLTARPRGRLVQSLSKADALFELSGFSMEQAQAYVMRYFESSGMTEHQDRALTLLRDRPLLLSHSHSPTLCRAVCQLSEALLELGEDAKLPSTLTGLYVGLLGRAALDSPPGALAELAKLAWELGRRHQSTLQEDQFPSADVRTWAMAKGLVQHPPRAAESELAFPSFLLQCFLGALWLALSGEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLIFQPPARCLGALLGPSAAASVDRKQKVLARYLKRLQPGTLRARQLLELLHCAHEAEEAGIWQHVVQELPGRLSFLGTRLTPPDAHVLGKALEAAGQDFSLDLRSTGICPSGLGSLVGLSCVTRFRAALSDTVALWESLQQHGETKLLQAAEEKFTIEPFKAKSLKDVEDLGKLVQTQRTRSSSEDTAGELPAVRDLKKLEFALGPVSGPQAFPKLVRILTAFSSLQHLDLDALSENKIGDEGVSQLSATFPQLKSLETLNLSQNNITDLGAYKLAEALPSLAASLLRLSLYNNCICDVGAESLARVLPDMVSLRVMDVQYNKFTAAGAQQLAASLRRCPHVETLAMWTPTIPFSVQEHLQQQDSRISLR
"
     misc_feature    1373..1882
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /note="NACHT domain; Region: NACHT; pfam05729"
                     /db_xref="CDD:191357"
     misc_feature    2498..3475
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /note="Leucine-rich repeats (LRRs), ribonuclease inhibitor
                     (RI)-like subfamily. LRRs are 20-29 residue sequence
                     motifs present in many proteins that participate in
                     protein-protein interactions and have different functions
                     and cellular locations. LRRs correspond...; Region:
                     LRR_RI; cd00116"
                     /db_xref="CDD:29015"
     misc_feature    order(2504..2506,2510..2512,2519..2521,2525..2527,
                     2570..2572,2579..2581,2594..2596,2603..2605,2609..2611,
                     2663..2665,2672..2674,2678..2680,2687..2689,2693..2695,
                     2768..2770,2777..2779,2783..2785,2792..2794,2798..2800,
                     2837..2839,2846..2848,2852..2854,2861..2863,2867..2869,
                     2924..2926,2933..2935,2939..2941,2948..2950,2954..2956,
                     3002..3004,3011..3013,3017..3019,3026..3028,3032..3034,
                     3089..3091,3098..3100,3104..3106,3122..3124,3128..3130,
                     3182..3184,3191..3193,3197..3199,3206..3208,3212..3214,
                     3269..3271,3278..3280,3284..3286,3293..3295,3299..3301,
                     3353..3355,3362..3364,3368..3370,3377..3379,3383..3385,
                     3443..3445,3452..3454,3458..3460,3467..3469,3473..3475)
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /note="Leucine-rich repeats; other site"
                     /db_xref="CDD:29015"
     misc_feature    order(2597..2602,2789..2791,2945..2947,3023..3025,
                     3203..3205,3281..3283,3287..3289,3365..3367,3455..3457)
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /note="Substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:29015"
     misc_feature    3086..3223
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /note="Leucine Rich repeats (2 copies); Region: LRR_4;
                     pfam12799"
                     /db_xref="CDD:205079"
     misc_feature    3086..3157
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P33076.3);
                     Region: LRR 1"
     misc_feature    3179..3244
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P33076.3);
                     Region: LRR 2"
     misc_feature    3266..3331
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P33076.3);
                     Region: LRR 3"
     misc_feature    3350..3412
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P33076.3);
                     Region: LRR 4"
     variation       137
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:375497479"
     variation       141
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:113187651"
     variation       145
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:368289650"
     variation       152
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:202176090"
     variation       153
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:374703179"
     variation       169
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:367628451"
     exon            186..332
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       200
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:201096647"
     variation       220
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:375101778"
     variation       224
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:373871771"
     variation       254
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:146996185"
     variation       258
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:369853995"
     variation       266
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:2229317"
     variation       293
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:375944925"
     variation       318
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:369154563"
     variation       321
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:372707984"
     exon            333..428
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       333
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200879588"
     variation       340
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:199476061"
     variation       347
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:143732812"
     variation       358
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:2229318"
     variation       391
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:138389258"
     variation       409
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:149531285"
     variation       419
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:149253747"
     variation       427
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:200299817"
     exon            429..491
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       440
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:371519540"
     variation       441
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:139248444"
     variation       459
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:375019139"
     variation       464
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:368329679"
     variation       485
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:142443082"
     exon            492..569
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       503
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:77169590"
     variation       517
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:140106499"
     variation       546
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:142469968"
     variation       568
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:369784128"
     variation       569
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:376464815"
     exon            570..614
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       585
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:373022799"
     variation       589
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:151317882"
     variation       593
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:76923280"
     variation       604
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:149990869"
     variation       609
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:147666647"
     exon            615..761
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       617
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:368188386"
     variation       625
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:142478532"
     variation       627
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:34648899"
     variation       653
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:8046121"
     variation       664
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:188055251"
     variation       698
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:370429955"
     variation       699
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:149076617"
     variation       700
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:143123121"
     variation       713
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:199476065"
     variation       725
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:148279688"
     variation       747
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:200545141"
     variation       754
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:141343169"
     variation       759
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368326813"
     exon            762..905
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       764
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:201764329"
     variation       778
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:143152174"
     variation       781
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:374843831"
     variation       787
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:369197968"
     variation       807
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:371653584"
     variation       824
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:147472574"
     variation       845
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:150307400"
     exon            906..1070
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       940
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:137859900"
     variation       959
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:142461515"
     variation       968
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:145961289"
     variation       1004
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:377598648"
     variation       1005
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:370673632"
     variation       1064
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:140139362"
     exon            1071..1139
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       1081
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:369971838"
     variation       1083
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:116253192"
     variation       1098
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:74806537"
     variation       1112
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:148597952"
     variation       1120
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:142970916"
     exon            1140..2790
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       1143
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:147670132"
     variation       1145
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:377634337"
     variation       1177
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:140683241"
     variation       1180
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:144735718"
     variation       1186
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:147912483"
     variation       1199
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:374576307"
     variation       1201
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:140486686"
     variation       1272
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:371128355"
     variation       1274
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:137852602"
     variation       1300
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:372456158"
     variation       1301
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:182369772"
     variation       1310
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:145558777"
     variation       1347
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:148904933"
     variation       1355
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:145508828"
     variation       1358
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:137895901"
     variation       1363
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:199476069"
     variation       1364
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:201966261"
     variation       1386
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:142317834"
     variation       1417
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:113334711"
     variation       1455
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:201662987"
     variation       1477
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:372566990"
     variation       1478
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:144597413"
     variation       1519
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:376000444"
     variation       1545
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:374803316"
     variation       1562
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:150205851"
     variation       1594
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:141202424"
     variation       1613
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:150888938"
     variation       1624
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:138250353"
     variation       1632
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:4774"
     variation       1650
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:200354120"
     variation       1651
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:201215476"
     variation       1665
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:147316330"
     variation       1675
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2228239"
     variation       1678
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:200146904"
     variation       1684
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:370785250"
     variation       1689
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:141006925"
     variation       1701
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:200881105"
     variation       1710
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:200240463"
     variation       1712
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:35451230"
     variation       1724
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:144646271"
     variation       1727
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:375800045"
     variation       1776
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:376916824"
     variation       1778
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:371577816"
     variation       1813
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:374666560"
     variation       1816
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:76686583"
     variation       1817
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:199476070"
     variation       1853
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:148543906"
     variation       1864
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:142848848"
     variation       1865
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:151195889"
     variation       1869
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368212887"
     variation       1872
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:140269818"
     variation       1873
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:78666334"
     variation       1877
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:200601676"
     variation       1920
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:146528748"
     variation       1922
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:201007775"
     variation       1924
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:201657235"
     variation       1928
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:375045681"
     variation       1929
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:141095229"
     variation       1930
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:368142561"
     variation       1967
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:142257962"
     variation       1975
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:201489439"
     variation       1976
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:144630160"
     variation       1989
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:371603520"
     variation       2023
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:371967455"
     variation       2041
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200398959"
     variation       2049
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:376577994"
     variation       2059
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:138376967"
     variation       2072
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:372705496"
     variation       2090
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:199476071"
     variation       2098
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:199548540"
     variation       2106
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:2229319"
     variation       2138
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:375474357"
     variation       2157
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:372609051"
     variation       2158
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200253132"
     variation       2161
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:112852440"
     variation       2179
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:143474425"
     variation       2186
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:148144155"
     variation       2192
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:201080914"
     variation       2199
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:144027273"
     variation       2205
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:78108426"
     variation       2211
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:146380734"
     variation       2225
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:373488902"
     variation       2229
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:369787912"
     variation       2246
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:143304499"
     variation       2251
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:139717340"
     variation       2275
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:188988714"
     variation       2282
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:147459093"
     variation       2287
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:201455192"
     variation       2296
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:139227684"
     variation       2311
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:150014874"
     variation       2325
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:372853839"
     variation       2370
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:374855163"
     variation       2389
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200577013"
     variation       2396
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:369290177"
     variation       2419
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:35976871"
     variation       2435
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:200144896"
     variation       2455
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:77072504"
     variation       2461
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:144113544"
     variation       2464
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:34685848"
     variation       2475
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:13330686"
     variation       2478
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:13336804"
     variation       2489
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:199476072"
     variation       2503
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:374314327"
     variation       2510
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:34082539"
     variation       2527
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2229320"
     variation       2538
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:201182990"
     variation       2554
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:34654419"
     variation       2581
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:112250421"
     variation       2605
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:45621432"
     variation       2611
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:376456953"
     variation       2649
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:377484288"
     variation       2672
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:181710482"
     variation       2693
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:374056581"
     variation       2698
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2229321"
     variation       2720
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:146847126"
     variation       2750
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368233530"
     variation       2753
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:113889330"
     variation       2784
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:374443915"
     exon            2791..2949
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       2807
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:139200062"
     variation       2809
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2228238"
     variation       2814
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:143801818"
     variation       2815
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:148091568"
     variation       2832
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:7197779"
     variation       2855
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:150610082"
     variation       2918
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:367890193"
     exon            2950..3021
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       2997
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:202244966"
     variation       3018
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:201975951"
     exon            3022..3102
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       3025
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200599265"
     variation       3032
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:201571405"
     variation       3037
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:373511328"
     variation       3052
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:199886989"
     variation       3057
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:140103491"
     variation       3075
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:369744959"
     variation       3078
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:199476077"
     exon            3103..3195
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       3112
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:142031278"
     variation       3130
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:199829790"
     variation       3133
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200212249"
     variation       3136
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:143497260"
     variation       3151
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:146002719"
     exon            3196..3282
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       3207
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:4781022"
     variation       3241
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:150276623"
     variation       3247
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:200966627"
     variation       3248
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:367679755"
     variation       3256
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:138925894"
     variation       3265
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:202095013"
     exon            3283..3366
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       3286
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:143507445"
     variation       3289
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:199994537"
     variation       3298
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:369632475"
     variation       3304
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:2229322"
     variation       3307
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:148475711"
     variation       3308
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200742204"
     variation       3316
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:150928735"
     variation       3330
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:142072017"
     variation       3337
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:145819653"
     variation       3339
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:147935554"
     variation       3356
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:141713994"
     exon            3367..3450
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       3367
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:201907821"
     variation       3368
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:150452306"
     variation       3388
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:75521576"
     variation       3394
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:149640268"
     variation       3423
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:143260110"
     variation       3433
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:374199442"
     variation       3444
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:367805896"
     variation       3445
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:201958927"
     exon            3451..3548
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       3477
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:138790505"
     variation       3478
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:369114004"
     variation       3547
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:199845603"
     exon            3549..4654
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /inference="alignment:Splign:1.39.8"
     variation       3629
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:45617532"
     variation       3674
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:375866293"
     variation       3683
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:45526038"
     variation       3684
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:45451491"
     variation       3748
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:114862940"
     variation       3787
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:45447897"
     variation       3795
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:45564631"
     variation       3823
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:373854374"
     variation       3833
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:112026375"
     variation       3840
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:185592699"
     variation       3910..3911
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace=""
                     /replace="t"
                     /db_xref="dbSNP:200657631"
     variation       3924
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:377596808"
     variation       3940
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:141707720"
     variation       3956
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:146238273"
     variation       3976
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:369124100"
     STS             3977..4046
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /standard_name="D1S1423"
                     /db_xref="UniSTS:149619"
     variation       3991
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:190253856"
     variation       4030
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:371051432"
     variation       4113
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:374276437"
     variation       4170
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:139802594"
     variation       4216
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:11074940"
     variation       4261
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:34538398"
     variation       4368
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:149797059"
     variation       4375
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:182641396"
     variation       4436
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:1139564"
     variation       4437
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:45466393"
     variation       4453
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:45538933"
     polyA_site      4533
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
     variation       4543
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:112864269"
     variation       4580
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:377581710"
     variation       4652
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:145729250"
     polyA_site      4654
                     /gene="CIITA"
                     /gene_synonym="C2TA; CIITAIV; MHC2TA; NLRA"
ORIGIN      
ggttagtgatgaggctagtgatgaggctgtgtgcttctgagctgggcatccgaaggcatccttggggaagctgagggcacgaggaggggctgccagactccgggagctgctgcctggctgggattcctacacaatgcgttgcctggctccacgccctgctgggtcctacctgtcagagccccaaggcagctcacagtgtgccaccatggagttggggcccctagaaggtggctacctggagcttcttaacagcgatgctgaccccctgtgcctctaccacttctatgaccagatggacctggctggagaagaagagattgagctctactcagaacccgacacagacaccatcaactgcgaccagttcagcaggctgttgtgtgacatggaaggtgatgaagagaccagggaggcttatgccaatatcgcggaactggaccagtatgtcttccaggactcccagctggagggcctgagcaaggacattttcaagcacataggaccagatgaagtgatcggtgagagtatggagatgccagcagaagttgggcagaaaagtcagaaaagacccttcccagaggagcttccggcagacctgaagcactggaagccagctgagccccccactgtggtgactggcagtctcctagtgggaccagtgagcgactgctccaccctgccctgcctgccactgcctgcgctgttcaaccaggagccagcctccggccagatgcgcctggagaaaaccgaccagattcccatgcctttctccagttcctcgttgagctgcctgaatctccctgagggacccatccagtttgtccccaccatctccactctgccccatgggctctggcaaatctctgaggctggaacaggggtctccagtatattcatctaccatggtgaggtgccccaggccagccaagtaccccctcccagtggattcactgtccacggcctcccaacatctccagaccggccaggctccaccagccccttcgctccatcagccactgacctgcccagcatgcctgaacctgccctgacctcccgagcaaacatgacagagcacaagacgtcccccacccaatgcccggcagctggagaggtctccaacaagcttccaaaatggcctgagccggtggagcagttctaccgctcactgcaggacacgtatggtgccgagcccgcaggcccggatggcatcctagtggaggtggatctggtgcaggccaggctggagaggagcagcagcaagagcctggagcgggaactggccaccccggactgggcagaacggcagctggcccaaggaggcctggctgaggtgctgttggctgccaaggagcaccggcggccgcgtgagacacgagtgattgctgtgctgggcaaagctggtcagggcaagagctattgggctggggcagtgagccgggcctgggcttgtggccggcttccccagtacgactttgtcttctctgtcccctgccattgcttgaaccgtccgggggatgcctatggcctgcaggatctgctcttctccctgggcccacagccactcgtggcggccgatgaggttttcagccacatcttgaagagacctgaccgcgttctgctcatcctagacggcttcgaggagctggaagcgcaagatggcttcctgcacagcacgtgcggaccggcaccggcggagccctgctccctccgggggctgctggccggccttttccagaagaagctgctccgaggttgcaccctcctcctcacagcccggccccggggccgcctggtccagagcctgagcaaggccgacgccctatttgagctgtccggcttctccatggagcaggcccaggcatacgtgatgcgctactttgagagctcagggatgacagagcaccaagacagagccctgacgctcctccgggaccggccacttcttctcagtcacagccacagccctactttgtgccgggcagtgtgccagctctcagaggccctgctggagcttggggaggacgccaagctgccctccacgctcacgggactctatgtcggcctgctgggccgtgcagccctcgacagcccccccggggccctggcagagctggccaagctggcctgggagctgggccgcagacatcaaagtaccctacaggaggaccagttcccatccgcagacgtgaggacctgggcgatggccaaaggcttagtccaacacccaccgcgggccgcagagtccgagctggccttccccagcttcctcctgcaatgcttcctgggggccctgtggctggctctgagtggcgaaatcaaggacaaggagctcccgcagtacctagcattgaccccaaggaagaagaggccctatgacaactggctggagggcgtgccacgctttctggctgggctgatcttccagcctcccgcccgctgcctgggagccctactcgggccatcggcggctgcctcggtggacaggaagcagaaggtgcttgcgaggtacctgaagcggctgcagccggggacactgcgggcgcggcagctgctggagctgctgcactgcgcccacgaggccgaggaggctggaatttggcagcacgtggtacaggagctccccggccgcctctcttttctgggcacccgcctcacgcctcctgatgcacatgtactgggcaaggccttggaggcggcgggccaagacttctccctggacctccgcagcactggcatttgcccctctggattggggagcctcgtgggactcagctgtgtcacccgtttcagggctgccttgagcgacacggtggcgctgtgggagtccctgcagcagcatggggagaccaagctacttcaggcagcagaggagaagttcaccatcgagcctttcaaagccaagtccctgaaggatgtggaagacctgggaaagcttgtgcagactcagaggacgagaagttcctcggaagacacagctggggagctccctgctgttcgggacctaaagaaactggagtttgcgctgggccctgtctcaggcccccaggctttccccaaactggtgcggatcctcacggccttttcctccctgcagcatctggacctggatgcgctgagtgagaacaagatcggggacgagggtgtctcgcagctctcagccaccttcccccagctgaagtccttggaaaccctcaatctgtcccagaacaacatcactgacctgggtgcctacaaactcgccgaggccctgccttcgctcgctgcatccctgctcaggctaagcttgtacaataactgcatctgcgacgtgggagccgagagcttggctcgtgtgcttccggacatggtgtccctccgggtgatggacgtccagtacaacaagttcacggctgccggggcccagcagctcgctgccagccttcggaggtgtcctcatgtggagacgctggcgatgtggacgcccaccatcccattcagtgtccaggaacacctgcaacaacaggattcacggatcagcctgagatgatcccagctgtgctctggacaggcatgttctctgaggacactaaccacgctggaccttgaactgggtacttgtggacacagctcttctccaggctgtatcccatgagcctcagcatcctggcacccggcccctgctggttcagggttggcccctgcccggctgcggaatgaaccacatcttgctctgctgacagacacaggcccggctccaggctcctttagcgcccagttgggtggatgcctggtggcagctgcggtccacccaggagccccgaggccttctctgaaggacattgcggacagccacggccaggccagagggagtgacagaggcagccccattctgcctgcccaggcccctgccaccctggggagaaagtacttctttttttttatttttagacagagtctcactgttgcccaggctggcgtgcagtggtgcgatctgggttcactgcaacctccgcctcttgggttcaagcgattcttctgcttcagcctcccgagtagctgggactacaggcacccaccatcatgtctggctaatttttcatttttagtagagacagggttttgccatgttggccaggctggtctcaaactcttgacctcaggtgatccacccacctcagcctcccaaagtgctgggattacaagcgtgagccactgcaccgggccacagagaaagtacttctccaccctgctctccgaccagacaccttgacagggcacaccgggcactcagaagacactgatgggcaacccccagcctgctaattccccagattgcaacaggctgggcttcagtggcagctgcttttgtctatgggactcaatgcactgacattgttggccaaagccaaagctaggcctggccagatgcaccagcccttagcagggaaacagctaatgggacactaatggggcggtgagaggggaacagactggaagcacagcttcatttcctgtgtcttttttcactacattataaatgtctctttaatgtcacaggcaggtccagggtttgagttcataccctgttaccattttggggtacccactgctctggttatctaatatgtaacaagccaccccaaatcatagtggcttaaaacaacactcacattta
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:4261 -> Molecular function: GO:0003677 [DNA binding] evidence: TAS
            GeneID:4261 -> Molecular function: GO:0003713 [transcription coactivator activity] evidence: TAS
            GeneID:4261 -> Molecular function: GO:0005515 [protein binding] evidence: IPI
            GeneID:4261 -> Molecular function: GO:0005524 [ATP binding] evidence: IEA
            GeneID:4261 -> Molecular function: GO:0008022 [protein C-terminus binding] evidence: IPI
            GeneID:4261 -> Molecular function: GO:0032403 [protein complex binding] evidence: IDA
            GeneID:4261 -> Molecular function: GO:0033613 [activating transcription factor binding] evidence: IPI
            GeneID:4261 -> Molecular function: GO:0044212 [transcription regulatory region DNA binding] evidence: IDA
            GeneID:4261 -> Biological process: GO:0000122 [negative regulation of transcription from RNA polymerase II promoter] evidence: IMP
            GeneID:4261 -> Biological process: GO:0006351 [transcription, DNA-dependent] evidence: IEA
            GeneID:4261 -> Biological process: GO:0006955 [immune response] evidence: TAS
            GeneID:4261 -> Biological process: GO:0019221 [cytokine-mediated signaling pathway] evidence: TAS
            GeneID:4261 -> Biological process: GO:0032966 [negative regulation of collagen biosynthetic process] evidence: IC
            GeneID:4261 -> Biological process: GO:0034341 [response to interferon-gamma] evidence: IDA
            GeneID:4261 -> Biological process: GO:0045345 [positive regulation of MHC class I biosynthetic process] evidence: IDA
            GeneID:4261 -> Biological process: GO:0045348 [positive regulation of MHC class II biosynthetic process] evidence: IC
            GeneID:4261 -> Biological process: GO:0045892 [negative regulation of transcription, DNA-dependent] evidence: IDA
            GeneID:4261 -> Biological process: GO:0045893 [positive regulation of transcription, DNA-dependent] evidence: IDA
            GeneID:4261 -> Biological process: GO:0045944 [positive regulation of transcription from RNA polymerase II promoter] evidence: IDA
            GeneID:4261 -> Biological process: GO:0045944 [positive regulation of transcription from RNA polymerase II promoter] evidence: IMP
            GeneID:4261 -> Biological process: GO:0046677 [response to antibiotic] evidence: IDA
            GeneID:4261 -> Biological process: GO:0060333 [interferon-gamma-mediated signaling pathway] evidence: TAS
            GeneID:4261 -> Cellular component: GO:0005654 [nucleoplasm] evidence: TAS
            GeneID:4261 -> Cellular component: GO:0016605 [PML body] evidence: IDA

by @meso_cacase at DBCLS
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