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2025-05-09 16:49:33, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_033641 6721 bp mRNA linear PRI 11-MAY-2013
DEFINITION Homo sapiens collagen, type IV, alpha 6 (COL4A6), transcript
variant B, mRNA.
ACCESSION NM_033641
VERSION NM_033641.2 GI:148536826
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6721)
AUTHORS Uliana,V., Marcocci,E., Mucciolo,M., Meloni,I., Izzi,C., Manno,C.,
Bruttini,M., Mari,F., Scolari,F., Renieri,A. and Salviati,L.
TITLE Alport syndrome and leiomyomatosis: the first deletion extending
beyond COL4A6 intron 2
JOURNAL Pediatr. Nephrol. 26 (5), 717-724 (2011)
PUBMED 21380622
REMARK GeneRIF: In this paper we improve the definition of the
COL4A5/COL4A6 deletions in three Alport syndrome with diffuse
leiomyomatosis.
REFERENCE 2 (bases 1 to 6721)
AUTHORS Oohashi,T., Naito,I., Ueki,Y., Yamatsuji,T., Permpoon,R.,
Tanaka,N., Naomoto,Y. and Ninomiya,Y.
TITLE Clonal overgrowth of esophageal smooth muscle cells in diffuse
leiomyomatosis-Alport syndrome caused by partial deletion in COL4A5
and COL4A6 genes
JOURNAL Matrix Biol. 30 (1), 3-8 (2011)
PUBMED 20951201
REMARK GeneRIF: expression of collagen type IV alpha6 chain in the smooth
muscle BM of the gastrointestinal tract is restricted to the
esophagus in humans
REFERENCE 3 (bases 1 to 6721)
AUTHORS Romero,R., Friel,L.A., Velez Edwards,D.R., Kusanovic,J.P.,
Hassan,S.S., Mazaki-Tovi,S., Vaisbuch,E., Kim,C.J., Erez,O.,
Chaiworapongsa,T., Pearce,B.D., Bartlett,J., Salisbury,B.A.,
Anant,M.K., Vovis,G.F., Lee,M.S., Gomez,R., Behnke,E., Oyarzun,E.,
Tromp,G., Williams,S.M. and Menon,R.
TITLE A genetic association study of maternal and fetal candidate genes
that predispose to preterm prelabor rupture of membranes (PROM)
JOURNAL Am. J. Obstet. Gynecol. 203 (4), 361 (2010)
PUBMED 20673868
REMARK GeneRIF: Observational study of gene-disease association. (HuGE
Navigator)
REFERENCE 4 (bases 1 to 6721)
AUTHORS Bailey,S.D., Xie,C., Do,R., Montpetit,A., Diaz,R., Mohan,V.,
Keavney,B., Yusuf,S., Gerstein,H.C., Engert,J.C. and Anand,S.
CONSRTM DREAM investigators
TITLE Variation at the NFATC2 locus increases the risk of
thiazolidinedione-induced edema in the Diabetes REduction
Assessment with ramipril and rosiglitazone Medication (DREAM) study
JOURNAL Diabetes Care 33 (10), 2250-2253 (2010)
PUBMED 20628086
REMARK GeneRIF: Observational study of gene-disease association,
gene-environment interaction, and pharmacogenomic / toxicogenomic.
(HuGE Navigator)
REFERENCE 5 (bases 1 to 6721)
AUTHORS Romero,R., Velez Edwards,D.R., Kusanovic,J.P., Hassan,S.S.,
Mazaki-Tovi,S., Vaisbuch,E., Kim,C.J., Chaiworapongsa,T.,
Pearce,B.D., Friel,L.A., Bartlett,J., Anant,M.K., Salisbury,B.A.,
Vovis,G.F., Lee,M.S., Gomez,R., Behnke,E., Oyarzun,E., Tromp,G.,
Williams,S.M. and Menon,R.
TITLE Identification of fetal and maternal single nucleotide
polymorphisms in candidate genes that predispose to spontaneous
preterm labor with intact membranes
JOURNAL Am. J. Obstet. Gynecol. 202 (5), 431 (2010)
PUBMED 20452482
REMARK GeneRIF: Observational study of gene-disease association. (HuGE
Navigator)
REFERENCE 6 (bases 1 to 6721)
AUTHORS Ghebrehiwet,B., Peerschke,E.I., Hong,Y., Munoz,P. and Gorevic,P.D.
TITLE Short amino acid sequences derived from C1q receptor (C1q-R) show
homology with the alpha chains of fibronectin and vitronectin
receptors and collagen type IV
JOURNAL J. Leukoc. Biol. 51 (6), 546-556 (1992)
PUBMED 1377218
REFERENCE 7 (bases 1 to 6721)
AUTHORS Gupta,S., Batchu,R.B. and Datta,K.
TITLE Purification, partial characterization of rat kidney hyaluronic
acid binding protein and its localization on the cell surface
JOURNAL Eur. J. Cell Biol. 56 (1), 58-67 (1991)
PUBMED 1724753
REFERENCE 8 (bases 1 to 6721)
AUTHORS Hernandez,M.R., Igoe,F. and Neufeld,A.H.
TITLE Extracellular matrix of the human optic nerve head
JOURNAL Am. J. Ophthalmol. 102 (2), 139-148 (1986)
PUBMED 2426947
REFERENCE 9 (bases 1 to 6721)
AUTHORS Glant,T.T., Hadhazy,C., Mikecz,K. and Sipos,A.
TITLE Appearance and persistence of fibronectin in cartilage. Specific
interaction of fibronectin with collagen type II
JOURNAL Histochemistry 82 (2), 149-158 (1985)
PUBMED 3997552
REFERENCE 10 (bases 1 to 6721)
AUTHORS Matsubara,T., Trueb,B., Fehr,K., Ruttner,J.R. and Odermatt,B.F.
TITLE The localization and secretion of type IV collagen in synovial
capillaries by immunohistochemistry using a monoclonal antibody
against human type IV collagen
JOURNAL Exp. Cell Biol. 52 (3), 159-169 (1984)
PUBMED 6386565
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from CN313347.1, D21337.1,
AL136080.6, U04845.1, BF726518.1, BQ331638.1 and CB050016.1.
On Jun 1, 2007 this sequence version replaced gi:16357502.
Summary: This gene encodes one of the six subunits of type IV
collagen, the major structural component of basement membranes.
Like the other members of the type IV collagen gene family, this
gene is organized in a head-to-head conformation with another type
IV collagen gene, alpha 5 type IV collagen, so that the gene pair
shares a common promoter. Deletions in the alpha 5 gene that extend
into the alpha 6 gene result in diffuse leiomyomatosis accompanying
the X-linked Alport syndrome caused by the deletion in the alpha 5
gene. Two splice variants have been identified for this gene.
[provided by RefSeq, Jul 2008].
Transcript Variant: This variant (B) utilizes alternative exon 1B
resulting in a different 5'UTR and signal peptide.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
RNAseq introns :: single sample supports all introns ERS025088
[ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: full length.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-732 CN313347.1 6-737
733-2977 D21337.1 735-2979
2978-3040 AL136080.6 5360-5422 c
3041-3309 D21337.1 3043-3311
3310-3310 AL136080.6 4184-4184 c
3311-4485 U04845.1 3191-4365
4486-5650 D21337.1 4452-5616
5651-6021 BF726518.1 97-467
6022-6194 BQ331638.1 146-318 c
6195-6721 CB050016.1 6-532 c
FEATURES Location/Qualifiers
source 1..6721
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="X"
/map="Xq22"
gene 1..6721
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/note="collagen, type IV, alpha 6"
/db_xref="GeneID:1288"
/db_xref="HGNC:2208"
/db_xref="HPRD:02364"
/db_xref="MIM:303631"
exon 1..243
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
misc_feature 170..172
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/note="upstream in-frame stop codon"
CDS 233..5305
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/note="isoform B precursor is encoded by transcript
variant B; collagen of basement membrane, alpha-6;
collagen IV, alpha-6 polypeptide; collagen alpha-6(IV)
chain; dJ889N15.4 (Collagen Alpha 6(IV))"
/codon_start=1
/product="collagen alpha-6(IV) chain isoform B precursor"
/protein_id="NP_378667.1"
/db_xref="GI:16357503"
/db_xref="CCDS:CCDS14542.1"
/db_xref="GeneID:1288"
/db_xref="HGNC:2208"
/db_xref="HPRD:02364"
/db_xref="MIM:303631"
/translation="
MHPGLWLLLVTLCLTEELAAAGEKSYGKPCGGQDCSGSCQCFPEKGARGRPGPIGIQGPTGPQGFTGSTGLSGLKGERGFPGLLGPYGPKGDKGPMGVPGFLGINGIPGHPGQPGPRGPPGLDGCNGTQGAVGFPGPDGYPGLLGPPGLPGQKGSKGDPVLAPGSFKGMKGDPGLPGLDGITGPQGAPGFPGAVGPAGPPGLQGPPGPPGPLGPDGNMGLGFQGEKGVKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFPGLGTTGEKGEKGEKGIPGLPGPRGPMGSEGVQGPPGQQGKKGTLGFPGLNGFQGIEGQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLKGDEGIQGLRGPSGVPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGPPSPEFETETLHNKESGFPGLRGEQGPKGNLGLKGIKGDSGFCACDGGVPNTGPPGEPGPPGPWGLIGLPGLKGARGDRGSGGAQGPAGAPGLVGPLGPSGPKGKKGEPILSTIQGMPGDRGDSGSQGFRGVIGEPGKDGVPGLPGLPGLPGDGGQGFPGEKGLPGLPGEKGHPGPPGLPGNGLPGLPGPRGLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPGLPGIPGTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLWLKGDKGSQGSAGSNGFPGPRGDKGEAGRPGPPGLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPSITGVPGPAGLPGPKGEKGYPGIGIGAPGKPGLRGQKGDRGFPGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQGDTGDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGEPGFMGTPGKVGPPGDPGFPGMKGKAGPRGSSGLQGDPGQTPTAEAVQVPPGPLGLPGIDGIPGLTGDPGAQGPVGLQGSKGLPGIPGKDGPSGLPGPPGALGDPGLPGLQGPPGFEGAPGQQGPFGMPGMPGQSMRVGYTLVKHSQSEQVPPCPIGMSQLWVGYSLLFVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMMPVSQTQIPQYISRCSVCEAPSQAIAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERQQFGELPVSETLKAGQLHTRVSRCQVCMKSL
"
sig_peptide 233..295
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="COORDINATES: ab initio prediction:SignalP:4.0"
mat_peptide 296..5302
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/product="collagen alpha-6(IV) chain isoform B"
misc_feature 4628..4951
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/note="C-terminal tandem repeated domain in type 4
procollagen; Region: C4; pfam01413"
/db_xref="CDD:144854"
misc_feature 4952..5296
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/note="C-terminal tandem repeated domain in type 4
procollagen; Region: C4; pfam01413"
/db_xref="CDD:144854"
exon 244..295
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 296..376
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 377..511
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 512..556
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 557..673
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 674..742
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 743..778
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 779..841
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 842..877
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 878..919
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 920..1012
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 1013..1066
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
variation 1043
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/replace="a"
/replace="c"
/db_xref="dbSNP:1126491"
variation 1045
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/replace="a"
/replace="c"
/db_xref="dbSNP:1126492"
variation 1046
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/replace="a"
/replace="c"
/db_xref="dbSNP:1126493"
exon 1067..1135
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 1136..1180
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 1181..1234
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 1235..1304
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 1305..1412
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 1413..1553
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 1554..1658
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
variation 1611
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:34740537"
exon 1659..1819
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 1820..1999
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 2000..2183
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 2184..2255
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 2256..2363
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 2364..2585
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 2586..2747
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 2748..2918
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 2919..3062
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
variation 3007
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/replace="a"
/replace="t"
/db_xref="dbSNP:1042066"
exon 3063..3188
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 3189..3370
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 3371..3434
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 3435..3509
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 3510..3617
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
variation 3559
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/replace="c"
/replace="g"
/db_xref="dbSNP:1042067"
variation 3605
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/replace="c"
/replace="t"
/db_xref="dbSNP:35179844"
exon 3618..3725
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
variation 3713
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/replace="a"
/replace="g"
/db_xref="dbSNP:34466065"
exon 3726..3797
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 3798..3923
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 3924..4040
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 4041..4202
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
variation 4087
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/replace="a"
/replace="g"
/db_xref="dbSNP:34132805"
exon 4203..4301
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 4302..4448
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
variation 4314
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/replace="c"
/replace="t"
/db_xref="dbSNP:35363062"
variation 4322
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/replace="c"
/replace="g"
/db_xref="dbSNP:1126494"
variation 4381
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/replace="a"
/replace="c"
/db_xref="dbSNP:35202133"
exon 4449..4565
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
variation 4486
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1042070"
exon 4566..4757
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 4758..5044
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
exon 5045..6698
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/inference="alignment:Splign:1.39.8"
STS 5416..5493
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/standard_name="DXS7789"
/db_xref="UniSTS:99556"
STS 5467..5594
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/standard_name="WI-18796"
/db_xref="UniSTS:33103"
STS 5513..5853
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/standard_name="DXS7494"
/db_xref="UniSTS:76027"
variation 6022
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1042071"
polyA_signal 6670..6675
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
polyA_signal 6675..6680
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
polyA_site 6698
/gene="COL4A6"
/gene_synonym="CXDELq22.3; DELXq22.3"
ORIGIN
ggaactatctcctgagtgctgcaagttgtaacgggcaccgctgagcctgtttccctttggagcacttcttatctagaagcagtgtttagtttcttccaaactgggccacttcgtccacctactctgttctgagtaaggaaacagcctccaagcatcagcagagcccagatgagcacgggccgcggagccgcttagcagtctcccgggacccagctccggaggagccgcaagcatgcaccctgggttgtggctgctcctggttacgttgtgcctgaccgaggaactggcagcagcgggagagaagtcttatggaaagccatgtgggggccaggactgcagtgggagctgtcagtgttttcctgagaaaggagcgagaggacgacctggaccaattggaattcaaggcccaacaggtcctcaaggattcactggctctactggtttatcgggattgaaaggagaaaggggtttcccaggccttctgggaccttatggaccaaaaggagataagggtcccatgggagttcctggctttcttggcatcaatgggattccgggccaccctggacaaccaggccccagaggcccacctggtctggatggctgtaatggaactcaaggagctgttggatttccaggccctgatggctatcctgggcttctcggaccacccgggcttcctggtcagaaaggatcaaaaggtgaccctgtccttgctccaggtagtttcaaaggaatgaagggggatcctgggctgcctggactggatggaatcactggcccacaaggagcacccggatttcctggagctgtaggacctgcaggaccaccaggattacaaggtcctccagggcctcctggtcctcttggtcctgatgggaatatggggctaggttttcaaggagagaaaggagtcaagggggatgttggcctccctggcccagcaggacctccaccatctactggagagctggaattcatgggattccccaaagggaagaaaggatccaagggtgaaccagggcctaagggttttccaggcataagtggccctccaggcttcccgggccttggaactactggagaaaagggagaaaagggagaaaagggaatccctggtttgccaggacctaggggtcccatgggttcagaaggagtccaaggccctccagggcaacagggcaagaaagggaccctgggatttcctgggcttaatggattccaaggaattgagggtcaaaagggtgacattggcctgccaggcccagatgttttcatcgatatagatggtgctgtgatctcaggtaatcctggagatcctggtgtacctggcctcccaggccttaaaggagatgaaggcatccaaggcctacgtggcccttctggtgtccctggattgccagcattatcaggtgtcccaggagccctagggcctcagggatttccagggctgaagggggaccaaggaaacccaggccgtaccacaattggagcagctggcctccctggcagagatggtttgccaggcccaccaggtccaccaggcccacctagtccagaatttgagactgaaactctacacaacaaagagtcagggttccctggtctccgaggagaacaaggtccaaaaggaaacctaggcctcaaaggaataaaaggagactcaggtttctgtgcttgtgacggtggtgttcccaacactggaccacccggggaaccaggcccacctggtccatggggtctcataggccttccaggccttaaaggagccagaggagatcgaggctctgggggtgcacagggcccagcaggggctccaggcttagttgggcctctgggtccttcaggacccaaaggaaagaagggggaaccaattctcagtacaatccaaggaatgccaggagatcggggtgattctggctcccagggcttccgtggtgtaataggagaaccaggcaaggacggagtaccaggtttaccaggtctgccaggccttccgggtgatggtggacagggcttcccaggtgaaaaggggttacctggacttcctggtgaaaaaggccatcctggtccacctggcctcccaggaaatgggttaccaggacttcctggaccccgtgggcttcctggagataaaggcaaggatggattaccgggacaacaaggccttcccggatctaagggaatcaccctgccctgtattattcctgggtcatacggtccatcaggatttccaggcactcccggattcccaggccctaaagggtctcgaggcctccctgggaccccaggccagcctgggtcaagtggaagtaaaggagagccagggagtccaggattggttcatcttcctgaattaccaggatttcctggacctcgtggggagaagggcttgcctgggtttcctgggctccctggaaaagatggcttgcctgggatgattggcagtccaggcttacctggttccaagggagccactggtgacatctttggtgctgaaaatggtgctccgggggaacaaggcctacaaggattaacagggcacaaaggatttcttggagactctggccttccaggactcaagggtgtgcacgggaagcctggcttactaggccccaaaggtgagcggggcagccctgggacaccaggacaggtgggacagccaggcaccccaggatctagtggtccatatggcatcaagggcaaatctgggctcccaggagcaccaggcttcccaggcatctcaggacatcctggaaagaaaggaacaagaggcaagaaaggtcctcctggatcaattgtaaagaaagggctgccagggctaaaaggccttcctggaaatccaggcctagtaggactgaaaggaagcccaggctctccaggggtcgctgggttgccagccctctctggacccaagggagagaaggggtctgttggattcgtaggttttccaggaataccaggtctgcctggtattcctggaacaagaggattaaaaggaattccaggatcaactggaaaaatgggaccatctggacgtgctggtactcctggtgaaaagggagacagaggcaatccggggccagtcggaatacctagtccaagacgtccaatgtcaaacctttggctcaaaggagacaaaggctctcaaggctcagccggatccaatggatttcctgggccaagaggtgacaaaggagaggctggtcgacctggaccaccaggcctacctggagctcctggcctcccaggcattatcaaaggagttagtggaaagccagggccccctggcttcatgggaatccggggcttacctggcctgaaggggtcctctgggatcacaggtttcccaggaatgccaggagaaagtggttcacaaggtatcagagggtcgcctggactcccaggagcatctggtctcccaggcctgaaaggagacaacggccagacagttgaaatttccggtagcccaggacccaagggacagcctggcgaatctggttttaaaggcacaaaaggaagagatggactaataggcaatataggcttccctggaaacaaaggtgaagatggaaaagttggtgtttctggagatgttggccttcctggagctccaggatttccaggagttgccggcatgagaggagaaccaggacttccaggttcttctggtcaccaaggggcaattgggcctctaggatcccccggattaataggacccaaaggcttccctggatttcctggtttacatggactgaatgggcttccgggcaccaagggtacccatggcactccaggacctagtatcaccggtgtgcctgggcctgctggtctccctggacccaaaggagaaaaaggatatccaggaattggcatcggagctccagggaagccgggcctgagagggcaaaaaggtgatcgaggtttcccaggtctccagggccctgctggtctccccggtgccccaggcatctccttgccctcactcatagcaggacagcctggtgaccccgggcgaccaggcctagatggagaacgaggccgcccaggccccgctggacccccaggtccccctgggccatcctcgaatcaaggcgacaccggagaccctggcttccctggaattcctggacctaaagggcctaagggagaccaaggaattccaggtttttctggcctccctggagagctaggactgaaaggcatgagaggtgagcctggcttcatggggactccaggcaaggttgggccacctggagacccaggatttcccggaatgaaggggaaggcagggccaagaggctcttctggcctccaaggtgatcctggacaaacaccaactgcagaagctgtccaggttcctcctggacccttgggtctaccagggatcgatggcatccctggcctcactggggaccctggggctcaaggccctgtaggcctacaaggctccaaaggtttacctggcatccccggtaaagatggccccagtgggctcccaggcccacctggggctcttggtgatcctggtctgcctggactgcaaggccctccaggatttgaaggagctccagggcagcaaggccccttcgggatgcctggaatgcctggccagagcatgagagtgggctacacgttggtaaagcacagccagtcggaacaggtgcccccgtgtcccatcgggatgagccagctgtgggtggggtacagcttactgtttgtggaggggcaagagaaagcccacaaccaggacctgggctttgctggctcctgtctgccccgcttcagcaccatgcccttcatctactgcaacatcaacgaggtgtgccactatgccaggcgcaatgataaatcttactggctctccactaccgcccctatccccatgatgcccgtcagccagacccagattccccagtacatcagccgctgctctgtgtgtgaggcaccctcgcaagccattgctgtgcacagccaggacatcaccatcccgcagtgccccctgggctggcgcagcctctggattgggtactctttcctcatgcacactgccgctggtgccgagggtggaggccagtccctggtctcacctggctcctgcctagaggactttcgggccactcctttcatcgaatgcagtggtgcccgaggcacctgccactactttgcaaacaagtacagtttctggttgaccacagtggaggagaggcagcagtttggggagttgcctgtgtctgaaacgctgaaagctgggcagctccacactcgagtcagtcgctgccaggtgtgtatgaaaagcctgtagggtggcacctgccactctgccccttgccctcccctgcccctcacaacagtcacctcacaaacctgaatggtctgaagaaggaaggcctgagcccctttgcctgtcaagttgtacattggagtctcatttgggctagactaccggacactcgtcaccccagccctcgggtccatagagatgagcccaccctgctgagatctgctgtcctgtttctgtcaagctggtgctactgtttgatttggatgattgtgtgactattcatggctacctcagaaagatttgatgggccacaactgtcttagactgctagctttctccttaccgtcttgatcggaaagctcttcctaatcgctaatcagtcatttcttcatgtacagaggtcagcacacattatttggcttaaaccagaacccagtgtttccacacttaaattctctaaccgaatattcatggatggctcaagtctgcacagagcaagtcctcactcttcaaggaggcccactgtgtctaggcaggcaagagaattgaaatgaggtgccacccagtagcccagagtgagctttagctctctctagaatgagcaagactgggccccacatggcttagagaggcttgaaggccagcagctgggttgggggtggtggtcattaatggcatatggtcctagacaaaccatctcctccttgccggctccccctccagccagagacagaggatgtggcctggttcaaagtaaagcagaggatgcaacaaatgtggccaagcctatcaaaggaaatgagaatgacagccttttttcctgggccagaagtagaggggtgggtgcgtaaggatgtgtgagttttgcttttgactccaggaacaaaaaggtaaatcccacatcccagtttctcagaagtccctgtttattccaaatgccatccagatgtgtgcaatgtggcaaactgaagctgcacagtgttggtttccttgtattctgaggatgttaaagactttgttaaatggttatccaattgctctttcacaggtagcctattaaactattttaatatgtttttttaaacctcataaaaatctagcacactcttctcttgagcagttagcagacctaaagcaagcctgaattggctatgcagtacattgtattctgtttgggggaatttgttttagccattttctttaattaccagttttccagaacactcttagctatgttgacatgaggcagttccttccaggtgattctgtttccttaagtattatataaactgtgccaatacagacaaagcataatcaatataatctgaattattgttatctttacctcctgagtaataagcatggtgtcagttttgtacatagcaaataaaataaatgaaatctgaacatgtgaaaaaaaaaaaaaaaaaaaaaaaa
//
ANNOTATIONS from NCBI Entrez Gene (20130726):
GeneID:1288 -> Molecular function: GO:0005201 [extracellular matrix structural constituent] evidence: NAS
GeneID:1288 -> Biological process: GO:0007155 [cell adhesion] evidence: IEA
GeneID:1288 -> Biological process: GO:0022617 [extracellular matrix disassembly] evidence: TAS
GeneID:1288 -> Biological process: GO:0030198 [extracellular matrix organization] evidence: NAS
GeneID:1288 -> Biological process: GO:0030198 [extracellular matrix organization] evidence: TAS
GeneID:1288 -> Biological process: GO:0030574 [collagen catabolic process] evidence: TAS
GeneID:1288 -> Biological process: GO:0071230 [cellular response to amino acid stimulus] evidence: IEA
GeneID:1288 -> Cellular component: GO:0005576 [extracellular region] evidence: TAS
GeneID:1288 -> Cellular component: GO:0005587 [collagen type IV] evidence: NAS
GeneID:1288 -> Cellular component: GO:0005788 [endoplasmic reticulum lumen] evidence: TAS
by
@meso_cacase at
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