2025-05-09 16:58:05, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_004685 5222 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens myotubularin related protein 6 (MTMR6), mRNA. ACCESSION NM_004685 VERSION NM_004685.3 GI:134142347 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5222) AUTHORS Mochizuki,Y., Ohashi,R., Kawamura,T., Iwanari,H., Kodama,T., Naito,M. and Hamakubo,T. TITLE Phosphatidylinositol 3-phosphatase myotubularin-related protein 6 (MTMR6) is regulated by small GTPase Rab1B in the early secretory and autophagic pathways JOURNAL J. Biol. Chem. 288 (2), 1009-1021 (2013) PUBMED 23188820 REMARK GeneRIF: results indicate that the cellular localization of MTMR6 is regulated by Rab1B in the early secretory and autophagic pathways REFERENCE 2 (bases 1 to 5222) AUTHORS Zou,J., Chang,S.C., Marjanovic,J. and Majerus,P.W. TITLE MTMR9 increases MTMR6 enzyme activity, stability, and role in apoptosis JOURNAL J. Biol. Chem. 284 (4), 2064-2071 (2009) PUBMED 19038970 REMARK GeneRIF: MTMR9 greatly enhances the functions of MTMR6 REFERENCE 3 (bases 1 to 5222) AUTHORS Srivastava,S., Ko,K., Choudhury,P., Li,Z., Johnson,A.K., Nadkarni,V., Unutmaz,D., Coetzee,W.A. and Skolnik,E.Y. TITLE Phosphatidylinositol-3 phosphatase myotubularin-related protein 6 negatively regulates CD4 T cells JOURNAL Mol. Cell. Biol. 26 (15), 5595-5602 (2006) PUBMED 16847315 REMARK GeneRIF: Data show that KCa3.1, which is critical for Ca2+ influx in reactivated naive T cells and central memory T cells, requires phosphatidylinositol-3 phosphatase for activation and is inhibited by PI(3)P phosphatase myotubularin-related protein 6 (MTMR6). REFERENCE 4 (bases 1 to 5222) AUTHORS Srivastava,S., Li,Z., Lin,L., Liu,G., Ko,K., Coetzee,W.A. and Skolnik,E.Y. TITLE The phosphatidylinositol 3-phosphate phosphatase myotubularin- related protein 6 (MTMR6) is a negative regulator of the Ca2+-activated K+ channel KCa3.1 JOURNAL Mol. Cell. Biol. 25 (9), 3630-3638 (2005) PUBMED 15831468 REFERENCE 5 (bases 1 to 5222) AUTHORS Dunham,A., Matthews,L.H., Burton,J., Ashurst,J.L., Howe,K.L., Ashcroft,K.J., Beare,D.M., Burford,D.C., Hunt,S.E., Griffiths-Jones,S., Jones,M.C., Keenan,S.J., Oliver,K., Scott,C.E., Ainscough,R., Almeida,J.P., Ambrose,K.D., Andrews,D.T., Ashwell,R.I., Babbage,A.K., Bagguley,C.L., Bailey,J., Bannerjee,R., Barlow,K.F., Bates,K., Beasley,H., Bird,C.P., Bray-Allen,S., Brown,A.J., Brown,J.Y., Burrill,W., Carder,C., Carter,N.P., Chapman,J.C., Clamp,M.E., Clark,S.Y., Clarke,G., Clee,C.M., Clegg,S.C., Cobley,V., Collins,J.E., Corby,N., Coville,G.J., Deloukas,P., Dhami,P., Dunham,I., Dunn,M., Earthrowl,M.E., Ellington,A.G., Faulkner,L., Frankish,A.G., Frankland,J., French,L., Garner,P., Garnett,J., Gilbert,J.G., Gilson,C.J., Ghori,J., Grafham,D.V., Gribble,S.M., Griffiths,C., Hall,R.E., Hammond,S., Harley,J.L., Hart,E.A., Heath,P.D., Howden,P.J., Huckle,E.J., Hunt,P.J., Hunt,A.R., Johnson,C., Johnson,D., Kay,M., Kimberley,A.M., King,A., Laird,G.K., Langford,C.J., Lawlor,S., Leongamornlert,D.A., Lloyd,D.M., Lloyd,C., Loveland,J.E., Lovell,J., Martin,S., Mashreghi-Mohammadi,M., McLaren,S.J., McMurray,A., Milne,S., Moore,M.J., Nickerson,T., Palmer,S.A., Pearce,A.V., Peck,A.I., Pelan,S., Phillimore,B., Porter,K.M., Rice,C.M., Searle,S., Sehra,H.K., Shownkeen,R., Skuce,C.D., Smith,M., Steward,C.A., Sycamore,N., Tester,J., Thomas,D.W., Tracey,A., Tromans,A., Tubby,B., Wall,M., Wallis,J.M., West,A.P., Whitehead,S.L., Willey,D.L., Wilming,L., Wray,P.W., Wright,M.W., Young,L., Coulson,A., Durbin,R., Hubbard,T., Sulston,J.E., Beck,S., Bentley,D.R., Rogers,J. and Ross,M.T. TITLE The DNA sequence and analysis of human chromosome 13 JOURNAL Nature 428 (6982), 522-528 (2004) PUBMED 15057823 REFERENCE 6 (bases 1 to 5222) AUTHORS Mochizuki,Y. and Majerus,P.W. TITLE Characterization of myotubularin-related protein 7 and its binding partner, myotubularin-related protein 9 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 100 (17), 9768-9773 (2003) PUBMED 12890864 REFERENCE 7 (bases 1 to 5222) AUTHORS Nandurkar,H.H., Layton,M., Laporte,J., Selan,C., Corcoran,L., Caldwell,K.K., Mochizuki,Y., Majerus,P.W. and Mitchell,C.A. TITLE Identification of myotubularin as the lipid phosphatase catalytic subunit associated with the 3-phosphatase adapter protein, 3-PAP JOURNAL Proc. Natl. Acad. Sci. U.S.A. 100 (15), 8660-8665 (2003) PUBMED 12847286 REMARK GeneRIF: Identification of myotubularin as the lipid phosphatase catalytic subunit associated with the 3-phosphatase adapter protein, 3-PAP. REFERENCE 8 (bases 1 to 5222) AUTHORS Schaletzky,J., Dove,S.K., Short,B., Lorenzo,O., Clague,M.J. and Barr,F.A. TITLE Phosphatidylinositol-5-phosphate activation and conserved substrate specificity of the myotubularin phosphatidylinositol 3-phosphatases JOURNAL Curr. Biol. 13 (6), 504-509 (2003) PUBMED 12646134 REMARK GeneRIF: investigation of MTM1 and MTMR6 and finding that they use PtdIns(3,5)P2 in addition to PtdIns3P as a substrate in vitro REFERENCE 9 (bases 1 to 5222) AUTHORS Simpson,J.C., Wellenreuther,R., Poustka,A., Pepperkok,R. and Wiemann,S. TITLE Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing JOURNAL EMBO Rep. 1 (3), 287-292 (2000) PUBMED 11256614 REFERENCE 10 (bases 1 to 5222) AUTHORS Laporte,J., Blondeau,F., Buj-Bello,A., Tentler,D., Kretz,C., Dahl,N. and Mandel,J.L. TITLE Characterization of the myotubularin dual specificity phosphatase gene family from yeast to human JOURNAL Hum. Mol. Genet. 7 (11), 1703-1712 (1998) PUBMED 9736772 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL590787.24, BC040012.1 and AL044815.1. On Mar 27, 2007 this sequence version replaced gi:37537693. Sequence Note: This RefSeq record was created from transcript and genomic sequence data because no single transcript was available for the full length of the gene. The extent of this transcript is supported by transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AL832017.2, BC040012.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support ERS025081, ERS025082 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-128 AL590787.24 72714-72841 c 129-1273 BC040012.1 1-1145 1274-1274 AL590787.24 43025-43025 c 1275-1821 BC040012.1 1147-1693 1822-1822 AL590787.24 37026-37026 c 1823-2347 BC040012.1 1695-2219 2348-3952 AL590787.24 32740-34344 c 3953-4185 BC040012.1 3825-4057 4186-4999 AL590787.24 31693-32506 c 5000-5222 AL044815.1 122-344 FEATURES Location/Qualifiers source 1..5222 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="13" /map="13q12" gene 1..5222 /gene="MTMR6" /note="myotubularin related protein 6" /db_xref="GeneID:9107" /db_xref="HGNC:7453" /db_xref="MIM:603561" exon 1..343 /gene="MTMR6" /inference="alignment:Splign:1.39.8" variation 49 /gene="MTMR6" /replace="c" /replace="t" /db_xref="dbSNP:3809334" variation 128 /gene="MTMR6" /replace="c" /replace="t" /db_xref="dbSNP:3809335" misc_feature 305..307 /gene="MTMR6" /note="upstream in-frame stop codon" CDS 320..2185 /gene="MTMR6" /codon_start=1 /product="myotubularin-related protein 6" /protein_id="NP_004676.3" /db_xref="GI:134142348" /db_xref="CCDS:CCDS9313.1" /db_xref="GeneID:9107" /db_xref="HGNC:7453" /db_xref="MIM:603561" /translation="
MEHIRTTKVEQVKLLDRFSTSNKSLTGTLYLTATHLLFIDSHQKETWILHHHIASVEKLALTTSGCPLVIQCKNFRTVHFIVPRERDCHDIYNSLLQLSKQAKYEDLYAFSYNPKQNDSERLQGWQLIDLAEEYKRMGVPNSHWQLSDANRDYKICETYPRELYVPRIASKPIIVGSSKFRSKGRFPVLSYYHQDKEAAICRCSQPLSGFSARCLEDEHLLQAISKANPVNRYMYVMDTRPKLNAMANRAAGKGYENEDNYSNIRFQFVGIENIHVMRSSLQKLLEVNGTKGLSVNDFYSGLESSGWLRHIKAVMDAAIFLAKAITVENASVLVHCSDGWDRTSQVCSLGSLLLDSYYRTIKGFMVLIEKDWISFGHKFSERCGQLDGDPKEVSPVFTQFLECVWHLTEQFPQAFEFSEAFLLQIHEHIHSCQFGNFLGNCQKEREELKLKEKTYSLWPFLLEDQKKYLNPLYSSESHRFTVLEPNTVSFNFKFWRNMYHQFDRTLHPRQSVFNIIMNMNEQNKQLEKDIKDLESKIKQRKNKQTDGILTKELLHSVHPESPNLKTSLCFKEQTLLPVNDALRTIEGSSPADNRYSEYAEEFSKSEPAVVSLEYGVARMTC
" misc_feature 776..1126 /gene="MTMR6" /note="Myotubularin-related; Region: Myotub-related; pfam06602" /db_xref="CDD:203483" misc_feature 1061..1072 /gene="MTMR6" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q9Y217.3); Region: Substrate binding (By similarity)" misc_feature 1136..1141 /gene="MTMR6" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q9Y217.3); Region: Substrate binding (By similarity)" misc_feature 1307..1471 /gene="MTMR6" /note="Myotubularin Y_phosphatase-like; Region: Y_phosphatase_m; pfam13849" /db_xref="CDD:206020" misc_feature 1325..1345 /gene="MTMR6" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q9Y217.3); Region: Substrate binding (By similarity)" misc_feature 2000..2002 /gene="MTMR6" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (Q9Y217.3); phosphorylation site" misc_feature 2000..2002 /gene="MTMR6" /experiment="experimental evidence, no additional details recorded" /note="phosphorylation site" misc_feature 2084..2086 /gene="MTMR6" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (Q9Y217.3); phosphorylation site" exon 344..460 /gene="MTMR6" /inference="alignment:Splign:1.39.8" exon 461..623 /gene="MTMR6" /inference="alignment:Splign:1.39.8" exon 624..781 /gene="MTMR6" /inference="alignment:Splign:1.39.8" exon 782..910 /gene="MTMR6" /inference="alignment:Splign:1.39.8" exon 911..1045 /gene="MTMR6" /inference="alignment:Splign:1.39.8" exon 1046..1178 /gene="MTMR6" /inference="alignment:Splign:1.39.8" exon 1179..1288 /gene="MTMR6" /inference="alignment:Splign:1.39.8" exon 1289..1414 /gene="MTMR6" /inference="alignment:Splign:1.39.8" exon 1415..1464 /gene="MTMR6" /inference="alignment:Splign:1.39.8" exon 1465..1665 /gene="MTMR6" /inference="alignment:Splign:1.39.8" exon 1666..1797 /gene="MTMR6" /inference="alignment:Splign:1.39.8" exon 1798..1924 /gene="MTMR6" /inference="alignment:Splign:1.39.8" exon 1925..5216 /gene="MTMR6" /inference="alignment:Splign:1.39.8" STS 2126..2248 /gene="MTMR6" /standard_name="D13S824E" /db_xref="UniSTS:151501" STS 3904..4009 /gene="MTMR6" /standard_name="A007G03" /db_xref="UniSTS:56899" variation 3952 /gene="MTMR6" /replace="c" /replace="t" /db_xref="dbSNP:8262" polyA_signal 4127..4132 /gene="MTMR6" polyA_site 4145 /gene="MTMR6" polyA_site 4185 /gene="MTMR6" STS 4899..5173 /gene="MTMR6" /standard_name="D13S1453" /db_xref="UniSTS:20423" STS 4948..5088 /gene="MTMR6" /standard_name="RH11246" /db_xref="UniSTS:78255" polyA_signal 5171..5176 /gene="MTMR6" polyA_site 5216 /gene="MTMR6" ORIGIN
cagtaccggcctcctccagcagggggcgctgtgggatccgccgctgtccgggacgaaccagcaagccgctctcggtccacacacgctctgtctgcctgccccgagtcccccgggaggccgcggggtttggggaagtgtttctaggagacggcgctcaccggctgcacctgcgccgttgacgccaccggggccggcagacagacccgcggcgctggctggtggagggagttcccgcttgctctctgtcgctgtcaccgccctgtttctgtagccgtatggtacgcctgtgagaccggctgccggctgacgtctccttgcgatggagcatatccggacgaccaaggtcgaacaagtaaaattacttgaccgattcagtaccagcaacaagtcattaacaggaacactgtatcttacggctacacatctattatttatcgactctcatcaaaaagaaacctggatattacaccaccatattgcctcagtagagaaacttgctttgactacttctggatgcccccttgtgatacagtgcaagaacttcagaactgtgcatttcattgttcccagagaaagagattgccatgatatttacaactctttgctacaactgtcaaaacaagcaaaatatgaagatctctatgcattttcttataatcccaaacaaaatgattcagaacgactacaaggctggcagctcattgatctcgctgaggaatataagaggatgggagtgccaaactcacactggcagttgtctgatgccaaccgggactacaagatttgtgaaacttaccccagagaactttatgttccccggatagcaagcaaaccaataattgttggtagttccaagttccggagcaagggaagattcccagttctttcctactatcatcaagataaggaggctgccatttgtcgatgtagtcagccactctctggattcagtgccaggtgcctggaggatgaacatttgcttcaagccattagtaaagccaatccagtcaatcgctatatgtacgtcatggataccaggccaaaactgaatgcaatggccaacagagcagctggaaaaggttatgaaaatgaagacaactattccaatattagatttcagtttgttggaattgaaaatattcatgtcatgaggtccagccttcagaaattattggaagtcaatggcactaaagggctttctgtcaatgatttctactccggtttggagagctcgggatggcttcgccatatcaaagctgttatggatgctgcaatcttcttggccaaagcaataacagttgaaaatgcaagtgtgttggtgcattgttccgatggttgggataggacttcccaggtttgttccctgggttctcttttattggattcctactacaggacaatcaaaggattcatggttttaatagaaaaggattggatctcttttggacataaattttcagagaggtgtggccagttggatggtgacccaaaggaagtctcaccagtgtttactcagttcttggaatgtgtgtggcatttgaccgaacagtttccacaagcctttgaattcagtgaagcatttcttcttcagatccatgagcatattcattcatgccagtttggaaacttccttggaaattgtcagaaggaaagagaagagctcaagttgaaggagaagacttattccctgtggccatttcttttggaagaccaaaagaagtacttaaatcctctctacagttccgaatctcacagatttacagttttggagccaaatacagtatctttcaattttaagttttggaggaacatgtaccatcaatttgatcgaacactgcatcctaggcagtctgtatttaatataattatgaatatgaatgagcaaaataaacaattagagaaagatattaaagacctagaatctaaaattaaacaacgcaaaaataagcaaacagatggcatcctcaccaaggaattgttacattcagttcatcctgaatcacctaacctcaaaacttccctgtgttttaaagagcagactctgctacccgtaaatgatgctcttcgaactatagagggcagcagcccggcagataatcgttatagtgaatatgcagaagagttttctaaatcagaacctgctgtggtcagcttagagtatggtgtggcaagaatgacttgttagactcatagagttttttctgcaatgattgcagtacaagaaaaggattattgtgaggatggtctgtaagcataaccaaaaggaatttgtctaataacaattttagggtttaacagtaggctaatagttgaaggaaggataataactacccttgtgagagaaataagtcattttaattgcatttccagcaaggaatgacattcagttctgtaagaaatgagtggtatttgatgtatttactcaaaacacaatttgcactgtacactagtgaattgacgtttatgatttatgttaattcagccaaacataaataaccttccttaagtacaatttaacttcaagaaaacaaaatttgacaacatagtttcttaataaatgatatggcatgtactttcaattatgtagctttgtaactatgaatatttacatattttgccttttagtgatatttaatgttaaagtgccatgaaaaatatttctaagaaagccttaaattcccagtggattctttacccttaagttttacagcctacaacaagattttttgttttgtttttcttctggtcagccttgttttgtttgtaaagaattgtgctctcattactgctgggggtgcatgctacaatacttctatataaacacttgtagaagtacactgttcacgtttagcctgccccacttttgtattcaaaattaatgaaactgaaggtttattctgatcataatttgtttagtgctacatttgataatttattatttacagcttagaatattgatttcttgaatacgtataagcacatttgactgtcttttatatatggattactgcattccattgattcttattttgtggttggctttatttctttcacaactgtgtaagtttaaagagctaaagctctaaaactgttctgagaaacaatgaatagtacatgtatatgtatatttttaaactgccttattgctcaatgagttgctgttcctggagtatctaactttcagtttactcaaaaacttttgggtaaataaaaaagggaagtacagatagtttaggttgtgcatggttgcatgaattttgaagtcatttctatgtggagcattatttttcttcttgttaaatatagaaaaaaaaagagattctagtacaaagttactgtttaacaaaagcaacataaactctgggaaagatttcattttgccatgttatatttactgtttattctgtgtactagtacatatctttaaattaccaaaaaacaagaaacaaaacataaaaaccccaaaactatcacttggaattagcaatatcacccaactggctttaaaattgaaaatttaaataacatggtggcatgaagtacaattcgagtattaggcaatttgcatagtgttcctcatgctactttctgttacacctctattatattagttttgaatataaacatctttttcagaccaaaaaaaactttattgtatgagagcttatcttatcctgtttatttttccaatgcttttctgtaatacattatgtaatttaaaaaatattcctttttaaacagcaacagaaatgcactataaaatatagtatgtgattaaccaatcctgcttccatatttaagcactgggaatggaaacttaatctctgtgactacaaagggaagtttttgtgccttggtgttccagtcactgattgtggttttagaatcttctgtggctgacttcttgtattcaactctggtttattatcttaatcttcaacttcagacatatatttgtgtgtttatatgctcacaggtggactgagaaatcagttacatcttaagtgacctacagggtatatgttggcaaaagcagactgtgtatatgtcttataaagttgaatttatgttcagtgtgtttggaagtgtatagcatgtaaattatttcatatatgatttaaaggtaattaaatgttcacattttactttgaatgtttttcttctggataaaacaaatggaatcaagttgtagttgttttttttttcttctcacctaggcaagtagacttgcccattacattaacataacagcataaggtttgaggagtttattttccaaaagtttgttgataaataatacctgtttcatacaaaaataatttccagaatatttaaaataggtatagtgggctaaaaggcccatcagatgtaggtaataatgtcattaagttttcattttgttcctgtcacttgcttatattacaatcactatttttttgtgcccttgccaacttgatggaaggcagggtccattgagtacaaacattcgaggtgaaatgtctctccaaaggcagatctggatgtaaatatgaggaagaaaataactggctgacaagaggataattttattgagggtgttttgaaaaggtcagctaggctagaagtagctcagggaatcttgagtaaagatgaagggaactcttttaaaacaaattcaatttatttggtcgggtagcagagcagggaggtggtgtcagtcaagcctgttttgaaacattttttgcagaaggtcagctttaaaatattgaaaaatttccagttgacatgctaagttggattaaatgctgatcatttataaaactatatagttgctgcaaaagtaattggggcttttgccattgaaagtgatgacaaaaaccgcaattacttttgcaccaacctaatactacagttgcagacttttattagtgacgctgatcttcattagtcaagttttagttattttgttggcttttccatgtagaattccaagtgacattaacatactttgattaattaaagaaaatttggagactgtttaagatatatgtctagatatcaatgtaaactataagctttaggaacttacatctagaagaaagcctggaatctagaataattatctcaaaaaaaagtatatataccattgtacttgatataagaaaatgtaaacatgaaaccttgacattttaataaacagtatttgtgctactctagttatttctaggaaagtaaaaaaaaaa
//
ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:9107 -> Molecular function: GO:0004722 [protein serine/threonine phosphatase activity] evidence: NAS GeneID:9107 -> Molecular function: GO:0004725 [protein tyrosine phosphatase activity] evidence: NAS GeneID:9107 -> Molecular function: GO:0015269 [calcium-activated potassium channel activity] evidence: IDA GeneID:9107 -> Biological process: GO:0006470 [protein dephosphorylation] evidence: NAS GeneID:9107 -> Biological process: GO:0006644 [phospholipid metabolic process] evidence: TAS GeneID:9107 -> Biological process: GO:0006661 [phosphatidylinositol biosynthetic process] evidence: TAS GeneID:9107 -> Biological process: GO:0035335 [peptidyl-tyrosine dephosphorylation] evidence: NAS GeneID:9107 -> Biological process: GO:0044281 [small molecule metabolic process] evidence: TAS GeneID:9107 -> Cellular component: GO:0005635 [nuclear envelope] evidence: IEA GeneID:9107 -> Cellular component: GO:0005737 [cytoplasm] evidence: IDA GeneID:9107 -> Cellular component: GO:0005829 [cytosol] evidence: TAS
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