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2025-05-09 17:20:09, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001204459 4309 bp mRNA linear PRI 17-APR-2013
DEFINITION Homo sapiens tumor necrosis factor receptor superfamily, member 19
(TNFRSF19), transcript variant 4, mRNA.
ACCESSION NM_001204459
VERSION NM_001204459.1 GI:325120960
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4309)
AUTHORS Fox,C.S., Liu,Y., White,C.C., Feitosa,M., Smith,A.V.,
Heard-Costa,N., Lohman,K., Johnson,A.D., Foster,M.C.,
Greenawalt,D.M., Griffin,P., Ding,J., Newman,A.B., Tylavsky,F.,
Miljkovic,I., Kritchevsky,S.B., Launer,L., Garcia,M.,
Eiriksdottir,G., Carr,J.J., Gudnason,V., Harris,T.B., Cupples,L.A.
and Borecki,I.B.
CONSRTM GIANT Consortium; MAGIC Consortium; GLGC Consortium
TITLE Genome-wide association for abdominal subcutaneous and visceral
adipose reveals a novel locus for visceral fat in women
JOURNAL PLoS Genet. 8 (5), E1002695 (2012)
PUBMED 22589738
REFERENCE 2 (bases 1 to 4309)
AUTHORS Eriksson,N., Tung,J.Y., Kiefer,A.K., Hinds,D.A., Francke,U.,
Mountain,J.L. and Do,C.B.
TITLE Novel associations for hypothyroidism include known autoimmune risk
loci
JOURNAL PLoS ONE 7 (4), E34442 (2012)
PUBMED 22493691
REFERENCE 3 (bases 1 to 4309)
AUTHORS Zidi,I.T., M'farrej,S.M., Bergaoui,S.D., Ghariani,N.Z.,
Bartegi,A.B., Ben Amor,N.N. and Nouira,R.B.
TITLE Tumor necrosis factor-receptor 2 and TROY gene expression patterns
in cutaneous squamous cell carcinoma in a Tunisian population
JOURNAL Saudi Med J 32 (11), 1202-1203 (2011)
PUBMED 22057614
REMARK GeneRIF: study demonstrated that TNFR2 and TROY mRNA levels are
enhanced in cutaneous squamous cell carcinoma cells compared to
healthy ones in a Tunisian population
REFERENCE 4 (bases 1 to 4309)
AUTHORS Kong,M., Kim,Y. and Lee,C.
TITLE A strong synergistic epistasis between FAM134B and TNFRSF19 on the
susceptibility to vascular dementia
JOURNAL Psychiatr. Genet. 21 (1), 37-41 (2011)
PUBMED 21127458
REMARK GeneRIF: The FAM134B and TNFRSF19 showed a dramatically strong
synergistic epistasis in explaining the genetic dissection of the
susceptibility to complex vascular dementia.
REFERENCE 5 (bases 1 to 4309)
AUTHORS Paulino,V.M., Yang,Z., Kloss,J., Ennis,M.J., Armstrong,B.A.,
Loftus,J.C. and Tran,N.L.
TITLE TROY (TNFRSF19) is overexpressed in advanced glial tumors and
promotes glioblastoma cell invasion via Pyk2-Rac1 signaling
JOURNAL Mol. Cancer Res. 8 (11), 1558-1567 (2010)
PUBMED 20881009
REMARK GeneRIF: TNFRSF19 overexpression in glioma cells activates Rac1
signaling in a Pyk2-dependent manner to drive glioma cell invasion
and migration
REFERENCE 6 (bases 1 to 4309)
AUTHORS Clark,H.F., Gurney,A.L., Abaya,E., Baker,K., Baldwin,D., Brush,J.,
Chen,J., Chow,B., Chui,C., Crowley,C., Currell,B., Deuel,B.,
Dowd,P., Eaton,D., Foster,J., Grimaldi,C., Gu,Q., Hass,P.E.,
Heldens,S., Huang,A., Kim,H.S., Klimowski,L., Jin,Y., Johnson,S.,
Lee,J., Lewis,L., Liao,D., Mark,M., Robbie,E., Sanchez,C.,
Schoenfeld,J., Seshagiri,S., Simmons,L., Singh,J., Smith,V.,
Stinson,J., Vagts,A., Vandlen,R., Watanabe,C., Wieand,D., Woods,K.,
Xie,M.H., Yansura,D., Yi,S., Yu,G., Yuan,J., Zhang,M., Zhang,Z.,
Goddard,A., Wood,W.I., Godowski,P. and Gray,A.
TITLE The secreted protein discovery initiative (SPDI), a large-scale
effort to identify novel human secreted and transmembrane proteins:
a bioinformatics assessment
JOURNAL Genome Res. 13 (10), 2265-2270 (2003)
PUBMED 12975309
REMARK Erratum:[Genome Res. 2003 Dec;13(12):2759]
REFERENCE 7 (bases 1 to 4309)
AUTHORS Naito,A., Yoshida,H., Nishioka,E., Satoh,M., Azuma,S., Yamamoto,T.,
Nishikawa,S. and Inoue,J.
TITLE TRAF6-deficient mice display hypohidrotic ectodermal dysplasia
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (13), 8766-8771 (2002)
PUBMED 12060722
REFERENCE 8 (bases 1 to 4309)
AUTHORS Kojima,T., Morikawa,Y., Copeland,N.G., Gilbert,D.J., Jenkins,N.A.,
Senba,E. and Kitamura,T.
TITLE TROY, a newly identified member of the tumor necrosis factor
receptor superfamily, exhibits a homology with Edar and is
expressed in embryonic skin and hair follicles
JOURNAL J. Biol. Chem. 275 (27), 20742-20747 (2000)
PUBMED 10764796
REFERENCE 9 (bases 1 to 4309)
AUTHORS Eby,M.T., Jasmin,A., Kumar,A., Sharma,K. and Chaudhary,P.M.
TITLE TAJ, a novel member of the tumor necrosis factor receptor family,
activates the c-Jun N-terminal kinase pathway and mediates
caspase-independent cell death
JOURNAL J. Biol. Chem. 275 (20), 15336-15342 (2000)
PUBMED 10809768
REFERENCE 10 (bases 1 to 4309)
AUTHORS Robertson,N.G., Khetarpal,U., Gutierrez-Espeleta,G.A., Bieber,F.R.
and Morton,C.C.
TITLE Isolation of novel and known genes from a human fetal cochlear cDNA
library using subtractive hybridization and differential screening
JOURNAL Genomics 23 (1), 42-50 (1994)
PUBMED 7829101
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from DA192370.1, AK304290.1,
BC047321.1, AY358888.1, BM801444.1, BF968836.1 and BF971156.1.
Summary: The protein encoded by this gene is a member of the
TNF-receptor superfamily. This receptor is highly expressed during
embryonic development. It has been shown to interact with TRAF
family members, and to activate JNK signaling pathway when
overexpressed in cells. This receptor is capable of inducing
apoptosis by a caspase-independent mechanism, and it is thought to
play an essential role in embryonic development. Alternatively
spliced transcript variants encoding distinct isoforms have been
described. [provided by RefSeq, Jul 2008].
Transcript Variant: This variant (4) differs in the 5' and 3'
end-regions including UTRs and coding sequences, as compared to
variant 1. The resulting isoform (3) has a shorter N-terminus and a
distinct and shorter C-terminus, as compared to isoform 1.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: AK304290.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
ERS025084, ERS025088 [ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-294 DA192370.1 1-294
295-922 AK304290.1 1-628
923-2685 BC047321.1 923-2685
2686-2985 AY358888.1 2571-2870
2986-3201 BM801444.1 253-468
3202-3720 BF968836.1 1-519
3721-4309 BF971156.1 1-589
FEATURES Location/Qualifiers
source 1..4309
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="13"
/map="13q12.11-q12.3"
gene 1..4309
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/note="tumor necrosis factor receptor superfamily, member
19"
/db_xref="GeneID:55504"
/db_xref="HGNC:11915"
/db_xref="MIM:606122"
exon 1..479
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/inference="alignment:Splign:1.39.8"
variation 10
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:146430384"
variation 124
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:185268750"
variation 191..192
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace=""
/replace="aa"
/db_xref="dbSNP:141713160"
variation 214
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:113336140"
variation 296
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:372523931"
variation 304
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace=""
/replace="t"
/db_xref="dbSNP:142732607"
variation 328
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="g"
/replace="t"
/db_xref="dbSNP:189995034"
variation 329
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="c"
/db_xref="dbSNP:41283962"
variation 358
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="g"
/db_xref="dbSNP:150274023"
variation 435
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:145840898"
variation 463
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="t"
/db_xref="dbSNP:148992593"
misc_feature 465..467
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/note="upstream in-frame stop codon"
exon 480..658
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/inference="alignment:Splign:1.39.8"
variation 491
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:145815290"
variation 501
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:138634567"
variation 506
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="t"
/db_xref="dbSNP:373247986"
variation 528
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:142769629"
variation 533
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="g"
/db_xref="dbSNP:147369656"
variation 559
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:372392866"
variation 589
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="g"
/replace="t"
/db_xref="dbSNP:374008761"
variation 597
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:149498209"
variation 641
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:375719826"
exon 659..744
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/inference="alignment:Splign:1.39.8"
variation 673
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:373411330"
variation 674
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:145592847"
variation 684
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:144154174"
CDS 696..1553
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/note="isoform 3 is encoded by transcript variant 4;
toxicity and JNK inducer"
/codon_start=1
/product="tumor necrosis factor receptor superfamily
member 19 isoform 3"
/protein_id="NP_001191388.1"
/db_xref="GI:325120961"
/db_xref="CCDS:CCDS55893.1"
/db_xref="GeneID:55504"
/db_xref="HGNC:11915"
/db_xref="MIM:606122"
/translation="
MECVPCGDPPPPYEPHCASKVNLVKIASTASSPRDTALAAVICSALATVLLALLILCVIYCKRQFMEKKPSWSLRSQDIQYNGSELSCFDRPQLHEYAHRACCQCRRDSVQTCGPVRLLPSMCCEEACSPNPATLGCGVHSAASLQARNAGPAGEMVPTFFGSLTQSICGEFSDAWPLMQNPMGGDNISFCDSYPELTGEDIHSLNPELESSTSLDSNSSQDLVGGAVPVQSHSENFTAATDLSRYNNTLVESASTQDALTMRSQLDQESGAVIHPATQTSLQEA
"
variation 701
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:199955294"
variation 718
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="t"
/db_xref="dbSNP:371112090"
variation 721
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="g"
/db_xref="dbSNP:373486475"
variation 725
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:148702020"
variation 739
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:368876279"
variation 740
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:143483716"
variation 742
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:200629776"
exon 745..909
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/inference="alignment:Splign:1.39.8"
variation 765
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:116629724"
variation 775
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:61756242"
variation 781
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:139502219"
variation 796
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:373490793"
variation 800
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:61741509"
variation 824
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:114811052"
variation 857
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:185953608"
variation 858
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:202190525"
exon 910..1035
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/inference="alignment:Splign:1.39.8"
variation 918
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:115048916"
variation 919
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:372905269"
variation 920
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="g"
/db_xref="dbSNP:114789019"
variation 922
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:141048197"
variation 923
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:3751364"
variation 942
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:377622468"
variation 955
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:145810971"
variation 956
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:369538551"
variation 958
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="g"
/replace="t"
/db_xref="dbSNP:149014293"
variation 987
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="g"
/replace="t"
/db_xref="dbSNP:374264420"
variation 997
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="g"
/db_xref="dbSNP:200301452"
variation 1006
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:115547743"
variation 1012
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:377726164"
variation 1030
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="c"
/db_xref="dbSNP:376817601"
variation 1031
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:147110068"
variation 1034
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:138676880"
exon 1036..1138
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/inference="alignment:Splign:1.39.8"
variation 1036
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:373980471"
variation 1041
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:202087628"
variation 1044
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:370337019"
variation 1059
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:34983774"
variation 1082
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:61745191"
variation 1083
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:35041805"
variation 1090
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:368392120"
exon 1139..1544
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/inference="alignment:Splign:1.39.8"
variation 1150
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:201152842"
variation 1154
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:141678624"
variation 1156
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="g"
/db_xref="dbSNP:115141233"
variation 1168
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:200602341"
variation 1169
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:368402583"
variation 1178
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:201218290"
variation 1189
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:112056395"
variation 1192
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:200218483"
variation 1305
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:367870672"
variation 1312
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:58111610"
variation 1314
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:145301348"
variation 1333
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:115520634"
variation 1334
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:141890871"
variation 1359
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:146263697"
variation 1389
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:115260428"
variation 1393
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="t"
/db_xref="dbSNP:377014124"
variation 1398
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="g"
/db_xref="dbSNP:146078649"
variation 1421
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:144179899"
variation 1441
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:369698575"
variation 1468
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:144227429"
variation 1471
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:373236855"
variation 1473
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="g"
/db_xref="dbSNP:199672653"
variation 1506
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:148756021"
variation 1508
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:3751363"
variation 1512
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:3751362"
variation 1519
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="c"
/db_xref="dbSNP:199606342"
variation 1522
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:141714394"
exon 1545..4278
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/inference="alignment:Splign:1.39.8"
variation 1582
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:372413999"
variation 1601
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:375739239"
variation 1772
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:148077903"
variation 1828
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="c"
/db_xref="dbSNP:185211526"
variation 1838
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="g"
/replace="t"
/db_xref="dbSNP:9510804"
variation 1892
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:17079157"
variation 1982
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="g"
/replace="t"
/db_xref="dbSNP:142895402"
variation 2067
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="t"
/db_xref="dbSNP:147430287"
variation 2209
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="c"
/db_xref="dbSNP:373969162"
variation 2273
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:9580713"
variation 2311
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:116488970"
variation 2370
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:139705287"
variation 2386
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:189770304"
variation 2416
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:145219104"
variation 2453
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:150542895"
variation 2462
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:139525768"
variation 2480
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:149682843"
variation 2547
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="t"
/db_xref="dbSNP:79570196"
variation 2590
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="t"
/db_xref="dbSNP:377322055"
variation 2681
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:17079161"
variation 2730
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:182719085"
variation 2746
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:189019326"
variation 2767
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:193150266"
variation 2892
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:11549249"
variation 2902
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:74733310"
variation 2903
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:183479653"
variation 2913
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="g"
/replace="t"
/db_xref="dbSNP:188419950"
variation 3075
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:17079164"
variation 3153
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:191560479"
variation 3241
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:183898407"
variation 3272
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:368825535"
variation 3296
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:374335489"
variation 3503
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:188680232"
variation 3522
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:140210652"
variation 3552
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:114408341"
variation 3604
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="c"
/db_xref="dbSNP:75190488"
variation 3612
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="c"
/db_xref="dbSNP:191243683"
variation 3696
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="g"
/db_xref="dbSNP:80084406"
STS 3820..3954
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/standard_name="RH46092"
/db_xref="UniSTS:57565"
STS 3820..3930
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/standard_name="G60010"
/db_xref="UniSTS:137278"
variation 3867
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:77135468"
variation 3881
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:1630"
variation 3884
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="t"
/db_xref="dbSNP:74703105"
variation 3906
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:114091307"
variation 3944
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="c"
/replace="g"
/db_xref="dbSNP:146633580"
variation 3991
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="c"
/db_xref="dbSNP:6490814"
variation 4125
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="c"
/db_xref="dbSNP:184527142"
variation 4136
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
/replace="a"
/replace="g"
/db_xref="dbSNP:7984549"
polyA_signal 4241..4246
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
polyA_site 4278
/gene="TNFRSF19"
/gene_synonym="TAJ; TAJ-alpha; TRADE; TROY"
ORIGIN
gcagttcagcgagatgaaagggataaagcagaacccgctggcactaggaaaagcttccaacacacagtccacaacacagcttgggaaccaaaaaagctacagatccagccactcagcccaagcatgggagaactaccagcattgcctcattgcaaaaaagaggaggaaaacaacgtgatccatgtttaacaaaagagtctgtggactaggaggtgggagggtaactacctgctgaaagtgaactttctttgatatccatgcatatatataaactcagccctgcctttgatgttcagcaactgattcactgatcagattacaggcatttcatctccctgctcgtctgcctttgatctgcatggttaattttattttcctggatttgaagtttcgtctgggcttgtgctgacatacatttttgggaaggtagaagcatttggcacagaagtgctgccaggagaaactaagttgctgaacgggaatgtggcttcggctatggggaggatgcacagtgtgtgacgtgccggctgcacaggttcaaggaggactggggcttccagaaatgcaagccctgtctggactgcgcagtggtgaaccgctttcagaaggcaaattgttcagccaccagtgatgccatctgcggggactgcttgccaggattttataggaagacgaaacttgtcggctttcaagacatggagtgtgtgccttgtggagaccctcctcctccttacgaaccgcactgtgccagcaaggtcaacctcgtgaagatcgcgtccacggcctccagcccacgggacacggcgctggctgccgttatctgcagcgctctggccaccgtcctgctggccctgctcatcctctgtgtcatctattgtaagagacagtttatggagaagaaacccagctggtctctgcggtcacaggacattcagtacaacggctctgagctgtcgtgttttgacagacctcagctccacgaatatgcccacagagcctgctgccagtgccgccgtgactcagtgcagacctgcgggccggtgcgcttgctcccatccatgtgctgtgaggaggcctgcagccccaacccggcgactcttggttgtggggtgcattctgcagccagtcttcaggcaagaaacgcaggcccagccggggagatggtgccgactttcttcggatccctcacgcagtccatctgtggcgagttttcagatgcctggcctctgatgcagaatcccatgggtggtgacaacatctctttttgtgactcttatcctgaactcactggagaagacattcattctctcaatccagaacttgaaagctcaacgtctttggattcaaatagcagtcaagatttggttggtggggctgttccagtccagtctcattctgaaaactttacagcagctactgatttatctagatataacaacacactggtagaatcagcatcaactcaggatgcactaactatgagaagccagctagatcaggagagtggtgctgtcatccacccagccactcagacgtccctccaggaagcttaaagaacctgcttctttctgcagtagaagcgtgtgctggaacccaaagagtactcctttgttaggcttatggactgagcagtctggaccttgcatggcttctggggcaaaaataaatctgaaccaaactgacggcatttgaagcctttcagccagttgcttctgagccagaccagctgtaagctgaaacctcaatgaataacaagaaaagactccaggccgactcatgatactctgcatctttcctacatgagaagcttctctgccacaaaagtgacttcaaagacggatgggttgagctggcagcctatgagattgtggacatataacaagaaacagaaatgccctcatgcttattttcatggtgattgtggttttacaagactgaagacccagagtatactttttctttccagaaataatttcataccgcctatgaaatatcagataaattaccttagcttttatgtagaatgggttcaaaagtgagtgtttctatttgagaaggacactttttcatcatctaaactgattcgcataggtggttagaatggccctcatattgcctgcctaaatcttgggtttattagatgaagtttactgaatcagaggaatcagacagaggaggatagctctttccagaatccacacttctgacctcagcctcggtctcatgaacacccgctgatctcaggagaacacctgggctagggaatgtggtcgagaaagggcagcccattgcccagaattaacacatattgtagagacttgtatgcaaaggttggcatatttatatgaaaattagttgctatagaaacatttgttgcatctgtccctctgcctgagcttagaaggttatagaaaaagggtatttataaacataaatgaccttttacttgcattgtatcttatactaaaggctttagaaattacaacatatcaggttcccctactactgaagtagccttccgtgagaacacaccacatgttaggactagaagaaaatgcacaatttgtaggggtttggatgaagcagctgtaactgccctagtgtagtttgaccaggacattgtcgtgctccttccaattgtgtaagattagttagcacatcatctcctactttagccatccggtgttggatttaagaggacggtgcttctttctattaaagtgctccatcccctaccatctacacattagcattgtctctagagctaagacagaaattaaccccgttcagtcacaaagcagggaatggttcatttactcttaatctttatgccctggagaagacctacttgaacagggcatattttttagacttctgaacatcagtatgttcgagggtactatgatattttggtttggaattgccctgcccaagtcactgtcttttaacttttaaactgaatattaaaatgtatctgtctttcctagtatgtttttatcttctcatgtattatccatggttttctctgtttgtgacagattagtaaaatttaatgagccctctttcttgtggccgtttctccatagttttaggttttgatatgtgtttactagcttgcctgtgtctggtacatctcatgacctcaattccctcacctgaaataggaaatgagaatgtttcattgtagccccaagcggtcatgtcaacctagtgcctagtcataattaattgacttttcctgtattacttctttttttaagtataaaccaatgatcctttggtagtcaagaactcttaggaacattgccttttggacatgtaaaatatttaggatttgaccacacaatggctatgaaaatgcaagtagtttcctcgcgtgacctcaccatgattcacatacgtgccactgtttgaaatctggtctgtttgcatttctgttatgacagagagatgatgtttgcatttctgttatgacagagagatgatgaaagtaggcagggctgtgttcctttgtgtagcctgtatatattttccatatgtagagccctgattaacttcaaggacaaacactggctggagaaagccagactgatgggaatgagactttggccaaaaatcccaaaacatcattttcaatcagtagagaagtgcttagggttgaaaattgatttcatttgctactgaatttggtaaatcctgggtaacttttatcaagatgaagacattttaccctacctactctagaaatatacaacaatgttatattttacactccttggaaacatttgaggaaaaaaatgcaatttgcacttcactttgttggaatatcccatagcactcaataaactcagctgctagagtgccgatgtcaggagggctgtgtcgggtaatgcgtgtggctgaatgggcataaccactgtggcttcttgtgctgcagaagctcgttgacaagactgaggaggatttcaagagcaaccaagtaaagtcatgaattttctaattttgtgtatatggaatatatttttaaatagagatttttctactttagataatgtgttaatattgctattacctaggttaagcactattgtctgtgctagtaagaaaaagaaaggaaaaccatcattgctttatagtagcttatatcaatttagatttcatcattactattttgcatactggaatttataaatgtgtaaattatcattttcttagttttgtaataccttttttatttgtgaataaaattatcacctggtattcttatttatgtgttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
//
ANNOTATIONS from NCBI Entrez Gene (20130726):
GeneID:55504 -> Molecular function: GO:0005031 [tumor necrosis factor-activated receptor activity] evidence: NAS
GeneID:55504 -> Biological process: GO:0001942 [hair follicle development] evidence: IEA
GeneID:55504 -> Biological process: GO:0006915 [apoptotic process] evidence: IEA
GeneID:55504 -> Biological process: GO:0006917 [induction of apoptosis] evidence: NAS
GeneID:55504 -> Biological process: GO:0007254 [JNK cascade] evidence: NAS
GeneID:55504 -> Biological process: GO:0033209 [tumor necrosis factor-mediated signaling pathway] evidence: NAS
GeneID:55504 -> Biological process: GO:0043123 [positive regulation of I-kappaB kinase/NF-kappaB cascade] evidence: RCA
GeneID:55504 -> Cellular component: GO:0016021 [integral to membrane] evidence: NAS
by
@meso_cacase at
DBCLS
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