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2025-05-09 17:02:32, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001184743 3155 bp mRNA linear PRI 17-APR-2013
DEFINITION Homo sapiens piggyBac transposable element derived 1 (PGBD1),
transcript variant 1, mRNA.
ACCESSION NM_001184743
VERSION NM_001184743.1 GI:296080756
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3155)
AUTHORS Kitazawa,M., Ohnuma,T., Takebayashi,Y., Shibata,N., Baba,H.,
Ohi,K., Yasuda,Y., Nakamura,Y., Aleksic,B., Yoshimi,A., Okochi,T.,
Ikeda,M., Naitoh,H., Hashimoto,R., Iwata,N., Ozaki,N., Takeda,M.
and Arai,H.
TITLE No associations found between the genes situated at 6p22.1,
HIST1H2BJ, PRSS16, and PGBD1 in Japanese patients diagnosed with
schizophrenia
JOURNAL Am. J. Med. Genet. B Neuropsychiatr. Genet. 159B (4), 456-464
(2012)
PUBMED 22488895
REMARK GeneRIF: The genes HIST1H2BJ, PRSS16, and PGBD1 were not associated
with Japanese patients with schizophrenia.
REFERENCE 2 (bases 1 to 3155)
AUTHORS Yue,W.H., Wang,H.F., Sun,L.D., Tang,F.L., Liu,Z.H., Zhang,H.X.,
Li,W.Q., Zhang,Y.L., Zhang,Y., Ma,C.C., Du,B., Wang,L.F., Ren,Y.Q.,
Yang,Y.F., Hu,X.F., Wang,Y., Deng,W., Tan,L.W., Tan,Y.L., Chen,Q.,
Xu,G.M., Yang,G.G., Zuo,X.B., Yan,H., Ruan,Y.Y., Lu,T.L., Han,X.,
Ma,X.H., Wang,Y., Cai,L.W., Jin,C., Zhang,H.Y., Yan,J., Mi,W.F.,
Yin,X.Y., Ma,W.B., Liu,Q., Kang,L., Sun,W., Pan,C.Y., Shuang,M.,
Yang,F.D., Wang,C.Y., Yang,J.L., Li,K.Q., Ma,X., Li,L.J., Yu,X.,
Li,Q.Z., Huang,X., Lv,L.X., Li,T., Zhao,G.P., Huang,W., Zhang,X.J.
and Zhang,D.
TITLE Genome-wide association study identifies a susceptibility locus for
schizophrenia in Han Chinese at 11p11.2
JOURNAL Nat. Genet. 43 (12), 1228-1231 (2011)
PUBMED 22037552
REMARK GeneRIF: wf fqw qf wefq q grq
Publication Status: Online-Only
REFERENCE 3 (bases 1 to 3155)
AUTHORS Li,T., Li,Z., Chen,P., Zhao,Q., Wang,T., Huang,K., Li,J., Li,Y.,
Liu,J., Zeng,Z., Feng,G., He,L. and Shi,Y.
TITLE Common variants in major histocompatibility complex region and TCF4
gene are significantly associated with schizophrenia in Han Chinese
JOURNAL Biol. Psychiatry 68 (7), 671-673 (2010)
PUBMED 20673877
REMARK GeneRIF: Observational study of gene-disease association. (HuGE
Navigator)
REFERENCE 4 (bases 1 to 3155)
AUTHORS Corneveaux,J.J., Myers,A.J., Allen,A.N., Pruzin,J.J., Ramirez,M.,
Engel,A., Nalls,M.A., Chen,K., Lee,W., Chewning,K., Villa,S.E.,
Meechoovet,H.B., Gerber,J.D., Frost,D., Benson,H.L., O'Reilly,S.,
Chibnik,L.B., Shulman,J.M., Singleton,A.B., Craig,D.W., Van
Keuren-Jensen,K.R., Dunckley,T., Bennett,D.A., De Jager,P.L.,
Heward,C., Hardy,J., Reiman,E.M. and Huentelman,M.J.
TITLE Association of CR1, CLU and PICALM with Alzheimer's disease in a
cohort of clinically characterized and neuropathologically verified
individuals
JOURNAL Hum. Mol. Genet. 19 (16), 3295-3301 (2010)
PUBMED 20534741
REMARK GeneRIF: Observational study and genome-wide association study of
gene-disease association. (HuGE Navigator)
REFERENCE 5 (bases 1 to 3155)
AUTHORS Agapkina,Iu.V., Nikitin,A.G., Brovkin,A.N., Pushkov,A.A.,
Evdokimova,M.A., Kudriashova,O.Iu., Osmolovskaia,V.S.,
Minushkina,L.O., Kochkina,M.S., Selezneva,N.D., Dankovtseva,E.N.,
Chumakova,O.S., Baklanova,T.N., Talyzin,P.A., Reznichenko,N.E.,
Donetskaia,O.P., Tereshchenko,S.N., Krasil'nikova,E.S.,
Dzhaiani,N.A., Akatova,E.V., Glezer,M.G., Galiavich,A.S.,
Zakirova,V.B., Kaziolova,N.A., Timofeeva,I.V., Iagoda,A.V.,
Boeva,O.I., Katel'nitskaia,L.I., Khorolets,E.V., Shlyk,S.V.,
Volkova,E.G., Margarian,M.P., Guz',I.O., Konstantinov,V.O.,
Timofeeva,A.N., Sidorenko,B.A., Zateishchikiov,D.A. and
Nosikov,V.V.
TITLE [Polymorphic markers G(-455)A of gene FGB and C(-1654)T of gene
PROC and genetic predisposition to unfavorable outcomes patients
undergoing acute coronary syndrome]
JOURNAL Mol. Biol. (Mosk.) 44 (4), 613-619 (2010)
PUBMED 20873219
REMARK GeneRIF: Observational study of gene-disease association. (HuGE
Navigator)
REFERENCE 6 (bases 1 to 3155)
AUTHORS Schjeide,B.M., McQueen,M.B., Mullin,K., DiVito,J., Hogan,M.F.,
Parkinson,M., Hooli,B., Lange,C., Blacker,D., Tanzi,R.E. and
Bertram,L.
TITLE Assessment of Alzheimer's disease case-control associations using
family-based methods
JOURNAL Neurogenetics 10 (1), 19-25 (2009)
PUBMED 18830724
REMARK GeneRIF: Meta-analysis of gene-disease association. (HuGE
Navigator)
REFERENCE 7 (bases 1 to 3155)
AUTHORS Sarkar,A., Sim,C., Hong,Y.S., Hogan,J.R., Fraser,M.J.,
Robertson,H.M. and Collins,F.H.
TITLE Molecular evolutionary analysis of the widespread piggyBac
transposon family and related 'domesticated' sequences
JOURNAL Mol. Genet. Genomics 270 (2), 173-180 (2003)
PUBMED 12955498
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from DA946293.1, BC069033.1 and
AK223446.1.
Summary: The piggyBac family of proteins, found in diverse animals,
are transposases related to the transposase of the canonical
piggyBac transposon from the moth, Trichoplusia ni. This family
also includes genes in several genomes, including human, that
appear to have been derived from the piggyBac transposons. This
gene belongs to the subfamily of piggyBac transposable element
derived (PGBD) genes. The PGBD proteins appear to be novel, with no
obvious relationship to other transposases, or other known protein
families. This gene product is specifically expressed in the brain,
however, its exact function is not known. Alternative splicing
results in multiple transcript variants encoding the same
protein.[provided by RefSeq, May 2010].
Transcript Variant: This variant (1) represents the longer
transcript. Variants 1 and 2 encode the same protein.
##Evidence-Data-START##
Transcript exon combination :: AK223446.1, BC040117.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
ERS025082, ERS025084 [ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-174 DA946293.1 1-174
175-2060 BC069033.1 1-1886
2061-3155 AK223446.1 2026-3120
FEATURES Location/Qualifiers
source 1..3155
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="6"
/map="6p22.1"
gene 1..3155
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/note="piggyBac transposable element derived 1"
/db_xref="GeneID:84547"
/db_xref="HGNC:19398"
exon 1..382
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/inference="alignment:Splign:1.39.8"
variation 31
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace=""
/replace="c"
/db_xref="dbSNP:376481543"
variation 50
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="g"
/db_xref="dbSNP:182334296"
variation 123
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:202113856"
variation 140
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="c"
/db_xref="dbSNP:186933400"
variation 170
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:374027976"
variation 236
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="g"
/replace="t"
/db_xref="dbSNP:191423707"
misc_feature 273..275
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/note="upstream in-frame stop codon"
variation 367
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:377568800"
exon 383..836
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/inference="alignment:Splign:1.39.8"
variation 389
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:41269291"
variation 412
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="g"
/replace="t"
/db_xref="dbSNP:370077679"
variation 421
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:199749086"
CDS 441..2870
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/note="cerebral protein-4; cerebral protein 4"
/codon_start=1
/product="piggyBac transposable element-derived protein 1"
/protein_id="NP_001171672.1"
/db_xref="GI:296080757"
/db_xref="CCDS:CCDS4648.1"
/db_xref="GeneID:84547"
/db_xref="HGNC:19398"
/translation="
MYEALPGPAPENEDGLVKVKEEDPTWEQVCNSQEGSSHTQEICRLRFRHFCYQEAHGPQEALAQLRELCHQWLRPEMHTKEQIMELLVLEQFLTILPKELQPCVKTYPLESGEEAVTVLENLETGSGDTGQQASVYIQGQDMHPMVAEYQGVSLECQSLQLLPGITTLKCEPPQRPQGNPQEVSGPVPHGSAHLQEKNPRDKAVVPVFNPVRSQTLVKTEEETAQAVAAEKWSHLSLTRRNLCGNSAQETVMSLSPMTEEIVTKDRLFKAKQETSEEMEQSGEASGKPNRECAPQIPCSTPIATERTVAHLNTLKDRHPGDLWARMHISSLEYAAGDITRKGRKKDKARVSELLQGLSFSGDSDVEKDNEPEIQPAQKKLKVSCFPEKSWTKRDIKPNFPSWSALDSGLLNLKSEKLNPVELFELFFDDETFNLIVNETNNYASQKNVSLEVTVQEMRCVFGVLLLSGFMRHPRREMYWEVSDTDQNLVRDAIRRDRFELIFSNLHFADNGHLDQKDKFTKLRPLIKQMNKNFLLYAPLEEYYCFDKSMCECFDSDQFLNGKPIRIGYKIWCGTTTQGYLVWFEPYQEESTMKVDEDPDLGLGGNLVMNFADVLLERGQYPYHLCFDSFFTSVKLLSALKKKGVRATGTIRENRTEKCPLMNVEHMKKMKRGYFDFRIEENNEIILCRWYGDGIISLCSNAVGIEPVNEVSCCDADNEEIPQISQPSIVKVYDECKEGVAKMDQIISKYRVRIRSKKWYSILVSYMIDVAMNNAWQLHRACNPGASLDPLDFRRFVAHFYLEHNAHLSD
"
misc_feature 561..812
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/note="SCAN oligomerization domain; Region: SCAN; cd07936"
/db_xref="CDD:153421"
misc_feature order(579..584,588..596,609..617,621..626,633..638,
645..650,654..665,675..680,687..692,699..707,711..716,
720..731,786..788,795..800,804..812)
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:153421"
misc_feature 1518..1520
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/experiment="experimental evidence, no additional details
recorded"
/note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
(Q96JS3.1); phosphorylation site"
misc_feature 1692..2765
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/note="Transposase IS4; Region: DDE_Tnp_1_7; pfam13843"
/db_xref="CDD:206014"
variation 445
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:145687745"
variation 460
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:147711434"
variation 461
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:77432588"
variation 475
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:146147836"
variation 481
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:146955908"
variation 499
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:374885052"
variation 513
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:114108814"
variation 528
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:377259598"
variation 535
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:111824233"
variation 543
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:114802814"
variation 558
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:371191301"
variation 559
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="t"
/db_xref="dbSNP:373121440"
variation 566
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="t"
/db_xref="dbSNP:1150723"
variation 570
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:143001863"
variation 571
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:377213554"
variation 586
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:376284542"
variation 608
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:370251891"
variation 609
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:115704058"
variation 611
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:374895380"
variation 623
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:149402191"
variation 636
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:141311101"
variation 649
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:374149714"
variation 664
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:368732368"
variation 665
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:115774579"
variation 688
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:370944384"
variation 696
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:145595497"
variation 712
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:138000084"
variation 733
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:142611268"
variation 761
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:371398454"
variation 775
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:200077598"
variation 782
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:146089282"
variation 785
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:202115881"
variation 806
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="c"
/db_xref="dbSNP:139734956"
variation 822
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:201040615"
exon 837..993
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/inference="alignment:Splign:1.39.8"
variation 861
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:149378160"
variation 863
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:369933396"
variation 880
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:200889872"
variation 941
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:377579839"
variation 964
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:201136697"
variation 980
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:370190642"
exon 994..1082
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/inference="alignment:Splign:1.39.8"
variation 999
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="g"
/db_xref="dbSNP:41269293"
variation 1018
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:148512859"
variation 1042
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:145647328"
variation 1064
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="t"
/db_xref="dbSNP:147753198"
exon 1083..1212
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/inference="alignment:Splign:1.39.8"
variation 1084
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="g"
/db_xref="dbSNP:140909568"
variation 1089
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="g"
/db_xref="dbSNP:201464950"
variation 1108
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:113099438"
variation 1115
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:151300360"
variation 1119
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:140761201"
variation 1122
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:368839771"
variation 1139
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="t"
/db_xref="dbSNP:115048063"
variation 1147
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:150118191"
variation 1155
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:139942981"
variation 1156
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:115946459"
variation 1167
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:372388049"
variation 1171
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:3800324"
variation 1182
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="g"
/db_xref="dbSNP:3800325"
variation 1207
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:3800326"
variation 1208
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:138163820"
variation 1211
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:201698521"
exon 1213..1309
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/inference="alignment:Splign:1.39.8"
variation 1246
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="t"
/db_xref="dbSNP:372524682"
variation 1269
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:12210601"
variation 1279
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="c"
/db_xref="dbSNP:376355935"
variation 1287
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:145011136"
exon 1310..3135
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/inference="alignment:Splign:1.39.8"
variation 1321
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:373880207"
variation 1333
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:185338871"
variation 1371
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="g"
/replace="t"
/db_xref="dbSNP:111232284"
variation 1387
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:377211662"
variation 1390
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:199718652"
variation 1476
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:148252586"
variation 1485
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:61741278"
variation 1492
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="g"
/replace="t"
/db_xref="dbSNP:141451644"
variation 1519
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:150861226"
variation 1566
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:372484685"
variation 1584
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:138134516"
variation 1606
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="g"
/replace="t"
/db_xref="dbSNP:375177248"
variation 1610
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="g"
/db_xref="dbSNP:143874020"
variation 1628
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="g"
/replace="t"
/db_xref="dbSNP:2281042"
variation 1633
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:33932084"
variation 1638
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:373235441"
variation 1646
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="g"
/db_xref="dbSNP:376942756"
variation 1656
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:200878562"
variation 1694
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="c"
/db_xref="dbSNP:201690431"
variation 1750
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="t"
/db_xref="dbSNP:371650496"
variation 1757
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="c"
/db_xref="dbSNP:140972908"
variation 1892
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:116218584"
variation 1897
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:376710760"
variation 1913
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:181599868"
variation 1952
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:367832979"
variation 1973
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:373230517"
variation 2072
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="c"
/db_xref="dbSNP:114020324"
variation 2128
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="c"
/db_xref="dbSNP:377057334"
variation 2130
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:11756103"
variation 2136
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="c"
/db_xref="dbSNP:369049968"
variation 2146
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:148568569"
variation 2216
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:16893917"
variation 2225
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="g"
/replace="t"
/db_xref="dbSNP:151181559"
variation 2264
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="g"
/replace="t"
/db_xref="dbSNP:140230205"
variation 2266
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="c"
/db_xref="dbSNP:200552389"
variation 2271
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:143963445"
variation 2303
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="g"
/db_xref="dbSNP:146424648"
variation 2320
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:141087060"
variation 2324
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="g"
/db_xref="dbSNP:150171687"
variation 2339
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="c"
/db_xref="dbSNP:369967702"
variation 2369
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:201094704"
variation 2388
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:115701378"
variation 2405
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:138581225"
variation 2406
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:200203742"
variation 2434
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:114746102"
variation 2469
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:139975763"
variation 2470
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:148884952"
variation 2472
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:1997660"
variation 2513
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:373711744"
variation 2539
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:148102095"
variation 2554
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:375608685"
variation 2588
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:368213423"
variation 2591
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:111676346"
variation 2600
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="c"
/db_xref="dbSNP:199791488"
variation 2615
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:41269295"
variation 2625
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:143914040"
variation 2667
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:201714424"
variation 2668
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="t"
/db_xref="dbSNP:200075250"
variation 2678
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:115398017"
variation 2680
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:147237521"
variation 2758
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:115496403"
STS 2763..2947
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/standard_name="RH79237"
/db_xref="UniSTS:53842"
variation 2771
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="c"
/db_xref="dbSNP:116321682"
variation 2778
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="g"
/replace="t"
/db_xref="dbSNP:139051198"
variation 2830
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:143300150"
variation 2849
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:114687796"
variation 2856
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="g"
/db_xref="dbSNP:6456811"
variation 2873
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="t"
/db_xref="dbSNP:9461449"
variation 2885
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:369174958"
variation 2888
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:373324481"
variation 2932
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:9468331"
variation 3060
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:1062169"
variation 3083
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:115301752"
variation 3109
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="c"
/replace="t"
/db_xref="dbSNP:7767897"
variation 3131
/gene="PGBD1"
/gene_synonym="dJ874C20.4; HUCEP-4; SCAND4"
/replace="a"
/replace="g"
/db_xref="dbSNP:73385824"
ORIGIN
actccgctgcgggcgcggcgcagggagaagcttttgtacccgcccagctgctggaggcgccggcagcgcccgccagacccgccagcccagcggcccgggctctggggaaaccggcgctcccgacaggggagcaccgggcctctgagctccctcgggagcctttcacgaggtcagctacgtctttgttgtgcgcgttcctgaacttttggtccattaaccaacaattagacacgccggtattcagtgcctggcgcggtgctagatgctgggtgtaatctcagaaaaatacattcaggggcgcgcctgagggtgctggctgctggcatctcaggtgctttacgtgcattcgtgaagaagcccatcagtatttcttgaataccagatctctatttctgaatatagaccccaagctaagtgaagctttagcctctaagctcaacatgtatgaagctttgccaggccctgctcctgaaaatgaagatggccttgtgaaagtgaaggaggaagatcccacctgggagcaggtgtgcaactcacaggagggcagctcccacactcaggagatttgccgcctgcgctttcggcacttctgctaccaggaggctcacggaccccaggaagctctggcccaactccgagaactttgtcatcaatggctgagaccggagatgcacaccaaggaacagataatggaactgctggtgctggagcagttcctgaccatcctgcccaaggagctccagccctgtgtgaagacatatcctctggagagtggagaggaggcagtgacagtgctggagaatctagagacaggaagtggagacacaggacaacaggcctctgtctatattcagggacaggacatgcacccaatggtggcagaatatcaaggagtctctttggagtgtcagagcctccagctcctgcctgggataaccaccctgaagtgtgaacctccacagcgtcctcaagggaacccccaagaagtgagtgggcctgttccccacggatcagctcatctccaggaaaaaaaccccagagacaaggctgtagtgcctgtgtttaacccagtcaggtcccagacattggtgaagactgaggaagaaacagcccaggccgttgctgcagagaagtggtcacatctgagtctgactcggaggaacctctgtgggaactcagctcaggagacagttatgagcctcagtccgatgactgaagaaattgtaactaaagatagattgtttaaagcaaagcaagaaacttctgaagaaatggaacaaagtggagaagcctcaggaaagcccaacagagagtgtgcaccccagattccttgtagtactcctattgctactgaaaggacagttgcacatttgaacactctgaaggaccgtcacccaggtgatttgtgggcccgcatgcacatctcatccctggaatatgctgcaggagacattacccgaaaagggagaaaaaaagacaaagctcgagtgagtgaactgctccaaggcctctcattctctggtgactcagatgtggaaaaagataatgagcctgagatccagcctgctcaaaagaagttaaaggtatcatgtttcccagaaaagagttggaccaaaagagacattaaacccaattttccaagctggtcagcactggattctggacttttgaatctcaagagcgaaaagttgaacccagtagagctttttgaattattttttgatgatgaaacattcaacttaattgtcaatgaaaccaataattatgcttctcagaaaaatgtcagcttggaagtcacagttcaggaaatgaggtgtgtgtttggtgtcttacttttgagtggatttatgaggcatcctagaagggaaatgtattgggaagtctctgacaccgatcagaacctggttagagatgcaatcagaagggacagatttgaattgattttctcaaacctgcactttgcagataatggccacctagatcaaaaagataagtttacaaagttgagacctctcataaaacaaatgaataaaaatttcctcttgtatgctcccctggaagaatactattgctttgataagtcaatgtgtgaatgctttgatagtgaccaattcctgaatggaaagcctattagaattggctataaaatttggtgtggtacaaccacacagggttatctggtttggtttgaaccctatcaagaagaatcaactatgaaggtagatgaggatcctgatcttgggttaggtggaaatctagtgatgaacttcgctgatgttcttttagagagaggtcagtatccctatcacctgtgttttgatagcttctttacaagtgtcaaattgttgtcagccttgaaaaagaagggggtgagggcaacaggaacaattcgtgagaacaggaccgaaaaatgtccccttatgaatgtagaacatatgaaaaaaatgaagagagggtattttgatttccgaatagaagaaaacaatgagataattttgtgtcgttggtatggggatggcattatcagtctgtgctccaatgctgtgggcatagaaccagtcaatgaggtaagctgttgtgatgctgataacgaagaaatccctcagataagtcaaccatccatagtaaaagtgtatgatgaatgcaaggaaggtgtagctaaaatggatcaaattatttcgaaatacagggtgaggataagaagcaagaaatggtactcaattttggtgagctacatgattgatgtagccatgaacaatgcatggcaactacacagagcctgtaacccaggtgcttctctagaccccttggattttcggagatttgttgcacatttctacttggaacacaatgctcatctgtcagattagggtacataaaatggacatagtgcagacattaataagacatagaaaaataataattatacatgctgttgtaccctcccaaagtaaatctgatatatgtaatgaagttattaaataatacttttaaaaatcagacatttatatagagtttcaaagactattgtaacaagtaatgttaaaaattgtctgtgagaatgttgaactgtagtacctttctctatgtcaagttttgtgtcagacatgggaaatcatgtatttgttcaattgaaaaaaaaaaaaaaaaaaaaa
//
ANNOTATIONS from NCBI Entrez Gene (20130726):
GeneID:84547 -> Molecular function: GO:0003700 [sequence-specific DNA binding transcription factor activity] evidence: IEA
GeneID:84547 -> Molecular function: GO:0005044 [scavenger receptor activity] evidence: IEA
GeneID:84547 -> Cellular component: GO:0005634 [nucleus] evidence: IEA
GeneID:84547 -> Cellular component: GO:0016020 [membrane] evidence: IEA
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