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Previous release (v1)
2026-09-22 20:06:14, GGRNA : RefSeq release 233 (Jan, 2026)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
Clostridium kluyveri" /mol_type="rRNA" /strain="NBRC 12016" /culture_collection="NBRC:12016" /type_material="type strain of Clostridium kluyveri" /db_xref="taxon:1534" rRNA 1..2896 /product="23S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Inui,M., Nonaka,H., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Vertes,A.A. and Yukawa,H. TITLE Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species JOURNAL Unpublished REFERENCE 2 (bases 1 to 2896) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (14-FEB-2013) National Center for...
NR_076268.1 -
Clostridium kluyveri -
NCBI
mol_type="rRNA" /strain="NBRC 12016" /type_material="type strain of Clostridium kluyveri" /db_xref="taxon:583346" /note="type strain of Clostridium kluyveri NBRC 12016" rRNA 1..114 /product="5S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Inui,M., Nonaka,H., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Vertes,A.A. and Yukawa,H. TITLE Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species JOURNAL Unpublished REFERENCE 2 (bases 1 to 114) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (14-FEB-2013) National Center for...
NR_075229.1 -
Clostridium kluyveri NBRC 12016 -
NCBI
genes (from 1.93 Mbp to 1.99 Mbp). A similar region occurs in DSM 555 (1.93 Mbp to 2.06 Mbp) but it is not only double the size of the NBRC12016 region, but also a duplicate." rRNA 1506 /product="16S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Inui,M., Nonaka,H., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Vertes,A.A. and Yukawa,H. TITLE Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species JOURNAL Unpublished REFERENCE 2 (bases 1 to 1506) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (28-JAN-2013) National Center...
NR_074447.1 -
Clostridium kluyveri NBRC 12016 -
NCBI
exon 866..931 /gene="PRKAR2A" /inference="alignment:Splign:2.1.0" exon 932..1073 /gene="PRKAR2A" /inference="alignment:Splign:2.1.0" exon 1074..1236 /gene="PRKAR2A" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1236) AUTHORS Nishimura,T., Fujii,W., Sugiura,K. and Naito,K. TITLE Cytoplasmic anchoring of cAMP-dependent protein kinase (PKA) by A-kinase anchor proteins (AKAPs) is required for meiotic arrest of porcine full-grown and growing oocytes JOURNAL Biol Reprod 90 (3), 58 (2014) PUBMED 24501172 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1236)...
NM_214258.2 -
Sus scrofa (pig) -
NCBI
Qualifiers source 1..1475 /organism="Porphyromonas gingivalis ATCC 33277" /mol_type="rRNA" /strain="ATCC 33277" /culture_collection="ATCC:33277" /type_material="type strain of Bacteroides gingivalis" /db_xref="taxon:431947" rRNA 1475 /product="16S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Naito,M., Hirakawa,H., Yamashita,A., Ohara,N., Shoji,M., Yukitake,H., Nakayama,K., Toh,H., Yoshimura,F., Kuhara,S., Hattori,M., Hayashi,T. and Nakayama,K. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive...
NR_074234.1 -
Porphyromonas gingivalis ATCC 33277 -
NCBI
Location/Qualifiers source 1..2883 /organism="Porphyromonas gingivalis" /mol_type="rRNA" /strain="ATCC 33277" /culture_collection="ATCC:33277" /type_material="type strain of Bacteroides gingivalis" /db_xref="taxon:837" rRNA 1..2883 /product="23S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Naito,M., Hirakawa,H., Yamashita,A., Ohara,N., Shoji,M., Yukitake,H., Nakayama,K., Toh,H., Yoshimura,F., Kuhara,S., Hattori,M., Hayashi,T. and Nakayama,K. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome...
NR_076276.1 -
Porphyromonas gingivalis -
NCBI
organism="Porphyromonas gingivalis ATCC 33277" /mol_type="rRNA" /strain="ATCC 33277" /type_material="type strain of Bacteroides gingivalis" /db_xref="taxon:431947" /note="type strain of Porphyromonas gingivalis ATCC 33277" rRNA 1..108 /product="5S ribosomal RNA" ORIGIN // REFERENCE 1 AUTHORS Naito,M., Hirakawa,H., Yamashita,A., Ohara,N., Shoji,M., Yukitake,H., Nakayama,K., Toh,H., Yoshimura,F., Kuhara,S., Hattori,M., Hayashi,T. and Nakayama,K. TITLE Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive...
NR_075237.1 -
Porphyromonas gingivalis ATCC 33277 -
NCBI
I., Wang,W., Longo,D.L., Schlessinger,D. and Ko,M.S. TITLE Uncovering early response of gene regulatory networks in ESCs by systematic induction of transcription factors JOURNAL Cell Stem Cell 5 (4), 420-433 (2009) PUBMED 19796622 REFERENCE 2 (bases 1 to 1530) AUTHORS Yanagihara,M., Ishikawa,S., Naito,M., Nakajima,J., Aburatani,H. and Hatakeyama,M. TITLE Paired-like homeoprotein ESXR1 acts as a sequence-specific transcriptional repressor of the human K-ras gene JOURNAL Oncogene 24 (38), 5878-5887 (2005) PUBMED 15897875 REFERENCE 3 (bases 1 to 1530) AUTHORS Ozawa,H., Ashizawa,S., Naito,M.,...
REFERENCE 2 (bases 1 to 1506) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (28-NOV-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1506) AUTHORS Miyamoto,H., Seta,M., Horiuchi,S., Iwasawa,Y., Naito,T., Miyamoto,H., Itoh,K. and Kodama,H. TITLE Direct Submission JOURNAL Submitted (03-MAR-2011) Contact:Hiroaki Kodama Chiba University, Graduate School of Horticulture; 648, Matsudo, Chiba 271-8510, Japan...
NR_144578.1 -
Caldifermentibacillus hisashii -
NCBI
PUBMED 35189966 REMARK GeneRIF: Expression of CDK1 is down regulated in the heart, spleen, thymus and skeletal muscle of late gestation fetuses compromised by viral infection Publication Status: Online-Only REFERENCE 2 (bases 1 to 1265) AUTHORS Fujii,W., Nishimura,T., Kano,K., Sugiura,K. and Naito,K. TITLE CDK7 and CCNH are components of CDK-activating kinase and are required for meiotic progression of pig oocytes JOURNAL Biol Reprod 85 (6), 1124-1132 (2011) PUBMED 21778139 REMARK GeneRIF: CDK7 and CCNH activate CDC2 by T161 phosphorylation and make up CDK-activating kinase, which is required...
Synonym: CDC2
NM_001159304.2 -
Sus scrofa (pig) -
NCBI
db_xref="GeneID:50994" /db_xref="MGI:MGI:1860766" exon 1..716 /gene="Mtag2" /gene_synonym="MAG" /inference="alignment:Splign:2.1.0" regulatory 695..700 /regulatory_class="polyA_signal_sequence" /gene="Mtag2" /gene_synonym="MAG" ORIGIN // REFERENCE 1 (bases 1 to 716) AUTHORS Ishiguro T, Nagawa H, Naito M and Tsuruo T. TITLE Analysis of novel metastasis-associated gene TI-227 JOURNAL Jpn J Cancer Res 91 (4), 390-394 (2000) PUBMED 10804286 REFERENCE 2 (bases 1 to 716) AUTHORS Kelly CD, Carter ND, Jeffery S and Edwards YH. TITLE Characterisation of cDNA clones for rat muscle carbonic anhydrase III...
variant 2" /db_xref="GeneID:50994" /db_xref="MGI:MGI:1860766" exon 1..114 /gene="Mtag2" /gene_synonym="MAG" /inference="alignment:Splign:2.1.0" exon 115..687 /gene="Mtag2" /gene_synonym="MAG" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 687) AUTHORS Ishiguro T, Nagawa H, Naito M and Tsuruo T. TITLE Analysis of novel metastasis-associated gene TI-227 JOURNAL Jpn J Cancer Res 91 (4), 390-394 (2000) PUBMED 10804286 REFERENCE 2 (bases 1 to 687) AUTHORS Kelly CD, Carter ND, Jeffery S and Edwards YH. TITLE Characterisation of cDNA clones for rat muscle carbonic anhydrase III...
alignment:Splign:2.1.0" exon 2057..2310 /gene="Tm-1" /gene_synonym="Tm-1^GCR237; tm-1^GCR26" /inference="alignment:Splign:2.1.0" exon 2311..2763 /gene="Tm-1" /gene_synonym="Tm-1^GCR237; tm-1^GCR26" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2763) AUTHORS Ishibashi,K., Naito,S., Meshi,T. and Ishikawa,M. TITLE An inhibitory interaction between viral and cellular proteins underlies the resistance of tomato to nonadapted tobamoviruses JOURNAL Proc Natl Acad Sci U S A 106 (21), 8778-8783 (2009) PUBMED 19423673 REMARK GeneRIF: Results suggest that an inhibitory interaction...
Synonym: Tm-1^GCR237; tm-1^GCR26
NM_001247795.2 -
Solanum lycopersicum (Lycopersicon esculentum) -
NCBI
Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 5239) AUTHORS Takahashi M, Tamura K, Buscher D, Masuya H, Yonei-Tamura S, Matsumoto K, Naitoh-Matsuo M, Takeuchi J, Ogura K, Shiroishi T, Ogura T and Izpisua Belmonte JC. TITLE The role of Alx-4 in the establishment of anteroposterior polarity during vertebrate limb development JOURNAL Development 125 (22), 4417-4425 (1998) PUBMED 9778501 REMARK Erratum:...
NM_001397959.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 5253) AUTHORS Takahashi M, Tamura K, Buscher D, Masuya H, Yonei-Tamura S, Matsumoto K, Naitoh-Matsuo M, Takeuchi J, Ogura K, Shiroishi T, Ogura T and Izpisua Belmonte JC. TITLE The role of Alx-4 in the establishment of anteroposterior polarity during vertebrate limb development JOURNAL Development 125 (22), 4417-4425 (1998) PUBMED 9778501 REMARK Erratum:...
NM_001397958.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
inference="alignment:Splign:2.1.0" exon 790..888 /gene="Ccng2" /inference="alignment:Splign:2.1.0" exon 889..1094 /gene="Ccng2" /inference="alignment:Splign:2.1.0" exon 1095..2472 /gene="Ccng2" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2506) AUTHORS Ohno S, Ikeda JI, Naito Y, Okuzaki D, Sasakura T, Fukushima K, Nishikawa Y, Ota K, Kato Y, Wang M, Torigata K, Kasama T, Uchihashi T, Miura D, Yabuta N, Morii E and Nojima H. TITLE Comprehensive phenotypic analysis of knockout mice deficient in cyclin G1 and cyclin G2 JOURNAL Sci Rep 6, 39091 (2016) PUBMED 27982046...
AUTHORS Tarantino C, Paolella G, Cozzuto L, Minopoli G, Pastore L, Parisi S and Russo T. TITLE miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic stem cells JOURNAL FASEB J 24 (9), 3255-3263 (2010) PUBMED 20439489 REFERENCE 2 (bases 1 to 87) AUTHORS Aoi W, Naito Y, Mizushima K, Takanami Y, Kawai Y, Ichikawa H and Yoshikawa T. TITLE The microRNA miR-696 regulates PGC-1{alpha} in mouse skeletal muscle in response to physical activity JOURNAL Am J Physiol Endocrinol Metab 298 (4), E799-E806 (2010) PUBMED 20086200 REFERENCE 3 (bases 1 to 87) AUTHORS Mineno J,...
stem cells to a germ cell fate JOURNAL Dev Biol 330 (1), 73-82 (2009) PUBMED 19324033 REMARK GeneRIF: Thus, our results demonstrate that Vasa can drive ES cell differentiation towards the germ cell lineage, both in vitro and in vivo REFERENCE 7 (bases 1 to 2948) AUTHORS Minematsu T, Harumi T and Naito M. TITLE Germ cell-specific expression of GFP gene induced by chicken vasa homologue (Cvh) promoter in early chicken embryos JOURNAL Mol Reprod Dev 75 (10), 1515-1522 (2008) PUBMED 18324671 REMARK GeneRIF: Cvh promoter provide the basis for for visualization, purification and genetical...
NM_204708.3 -
Gallus gallus (chicken) -
NCBI -
UCSC
Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 5479) AUTHORS Takahashi M, Tamura K, Buscher D, Masuya H, Yonei-Tamura S, Matsumoto K, Naitoh-Matsuo M, Takeuchi J, Ogura K, Shiroishi T, Ogura T and Izpisua Belmonte JC. TITLE The role of Alx-4 in the establishment of anteroposterior polarity during vertebrate limb development JOURNAL Development 125 (22), 4417-4425 (1998) PUBMED 9778501 REMARK Erratum:...
NM_204162.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
db_xref="CDD:462527" misc_feature 2386..2778 /gene="Rmi1" /gene_synonym="RGD1310671" /note="Recq-mediated genome instability protein 1, C-terminal OB-fold; Region: RMI1_C; pfam16099" /db_xref="CDD:465021" ORIGIN // REFERENCE 1 (bases 1 to 3101) AUTHORS Suwa,A., Yoshino,M., Yamazaki,C., Naitou,M., Fujikawa,R., Matsumoto,S., Kurama,T., Shimokawa,T. and Aramori,I. TITLE RMI1 deficiency in mice protects from diet and genetic-induced obesity JOURNAL FEBS J 277 (3), 677-686 (2010) PUBMED 20050919...
db_xref="CDD:462527" misc_feature 1790..2182 /gene="Rmi1" /gene_synonym="RGD1310671" /note="Recq-mediated genome instability protein 1, C-terminal OB-fold; Region: RMI1_C; pfam16099" /db_xref="CDD:465021" ORIGIN // REFERENCE 1 (bases 1 to 2505) AUTHORS Suwa,A., Yoshino,M., Yamazaki,C., Naitou,M., Fujikawa,R., Matsumoto,S., Kurama,T., Shimokawa,T. and Aramori,I. TITLE RMI1 deficiency in mice protects from diet and genetic-induced obesity JOURNAL FEBS J 277 (3), 677-686 (2010) PUBMED 20050919...
AUTHORS Tarantino C, Paolella G, Cozzuto L, Minopoli G, Pastore L, Parisi S and Russo T. TITLE miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic stem cells JOURNAL FASEB J 24 (9), 3255-3263 (2010) PUBMED 20439489 REFERENCE 3 (bases 1 to 109) AUTHORS Aoi W, Naito Y, Mizushima K, Takanami Y, Kawai Y, Ichikawa H and Yoshikawa T. TITLE The microRNA miR-696 regulates PGC-1{alpha} in mouse skeletal muscle in response to physical activity JOURNAL Am J Physiol Endocrinol Metab 298 (4), E799-E806 (2010) PUBMED 20086200 REFERENCE 4 (bases 1 to 109) AUTHORS Mineno J,...
AUTHORS Tarantino C, Paolella G, Cozzuto L, Minopoli G, Pastore L, Parisi S and Russo T. TITLE miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic stem cells JOURNAL FASEB J 24 (9), 3255-3263 (2010) PUBMED 20439489 REFERENCE 3 (bases 1 to 110) AUTHORS Aoi W, Naito Y, Mizushima K, Takanami Y, Kawai Y, Ichikawa H and Yoshikawa T. TITLE The microRNA miR-696 regulates PGC-1{alpha} in mouse skeletal muscle in response to physical activity JOURNAL Am J Physiol Endocrinol Metab 298 (4), E799-E806 (2010) PUBMED 20086200 REFERENCE 4 (bases 1 to 110) AUTHORS Mineno J,...
aggravated renal interstitial lesions JOURNAL Hypertension 64 (5), 1054-1060 (2014) PUBMED 25113963 REMARK GeneRIF: Pex11a deficiency is associated with a reduced abundance of functional peroxisomes and aggravated renal interstitial lesions. REFERENCE 2 (bases 1 to 2175) AUTHORS Weng H, Ji X, Naito Y, Endo K, Ma X, Takahashi R, Shen C, Hirokawa G, Fukushima Y and Iwai N. TITLE Pex11alpha deficiency impairs peroxisome elongation and division and contributes to nonalcoholic fatty liver in mice JOURNAL Am J Physiol Endocrinol Metab 304 (2), E187-E196 (2013) PUBMED 23169785 REMARK GeneRIF:...
N., Hara,M.R., Juluri,K.R., Nguyen,J.V., Snowman,A.M., Law,L., Hester,L.D. and Snyder,S.H. TITLE GAPDH mediates nitrosylation of nuclear proteins JOURNAL Nat Cell Biol 12 (11), 1094-1100 (2010) PUBMED 20972425 REFERENCE 2 (bases 1 to 1286) AUTHORS Baba,T., Kobayashi,H., Kawasaki,H., Mineki,R., Naito,H. and Ohmori,D. TITLE Glyceraldehyde-3-phosphate dehydrogenase interacts with phosphorylated Akt resulting from increased blood glucose in rat cardiac muscle JOURNAL FEBS Lett 584 (13), 2796-2800 (2010) PUBMED 20488185 REFERENCE 3 (bases 1 to 1286) AUTHORS Sen,N., Hara,M.R., Ahmad,A.S., Cascio,M.B...
B1 and Cdc2 in porcine oocytes and early parthenotes JOURNAL Mol. Reprod. Dev. 77 (1), 38-50 (2010) PUBMED 19705412 REMARK GeneRIF: Results describe the expression of maternal cyclin B1 and Cdc2 during in vitro maturation of porcine oocytes. REFERENCE 4 (bases 1 to 2060) AUTHORS Sugiura K, Naito K, Endo T and Tojo H. TITLE Study of germinal vesicle requirement for the normal kinetics of maturation/M-phase-promoting factor activity during porcine oocyte maturation JOURNAL Biol. Reprod. 74 (3), 593-600 (2006) PUBMED 16319287 REMARK GeneRIF: germinal vesicle is not required for the activation of...
NM_001170768.1 -
Sus scrofa (pig) -
NCBI
development and is essential for early embryonic survival JOURNAL Mol Carcinog 50 (2), 80-88 (2011) PUBMED 21229605 REMARK GeneRIF: These results demonstrated a dual-role of RMI1 in embryonic development and tumor suppression. REFERENCE 5 (bases 1 to 3599) AUTHORS Suwa A, Yoshino M, Yamazaki C, Naitou M, Fujikawa R, Matsumoto S, Kurama T, Shimokawa T and Aramori I. TITLE RMI1 deficiency in mice protects from diet and genetic-induced obesity JOURNAL FEBS J 277 (3), 677-686 (2010) PUBMED 20050919 REMARK GeneRIF: results suggest that the regulation of energy balance by RMI1 is attributable to the...
These results advance the knowledge of cell cycle regulators effects in tubular restoration and/or degeneration, and the cyclin b2 and CDC2 molecules are suggested to be a marker for the proliferation of proximal tubular cells in kidney failure. REFERENCE 4 (bases 1 to 1520) AUTHORS Kuroda,T., Naito,K., Sugiura,K., Yamashita,M., Takakura,I. and Tojo,H. TITLE Analysis of the roles of cyclin B1 and cyclin B2 in porcine oocyte maturation by inhibiting synthesis with antisense RNA injection JOURNAL Biol Reprod 70 (1), 154-159 (2004) PUBMED 12954723 REFERENCE 5 (bases 1 to 1520) AUTHORS Brandeis,M...
Tang Q, Li S, Zhang H, Wei Y, Wu H, Liu J, Wang Y, Liu D, Zhang Z and Liu C. TITLE Correlation of the cyclin A expression level with porcine circovirus type 2 propagation efficiency JOURNAL Arch Virol 158 (12), 2553-2560 (2013) PUBMED 23836398 REFERENCE 4 (bases 1 to 1991) AUTHORS Sugiura K, Naito K and Tojo H. TITLE Cdk2 activity is essential for the first to second meiosis transition in porcine oocytes JOURNAL J Reprod Dev 51 (1), 143-149 (2005) PUBMED 15750306 REFERENCE 5 (bases 1 to 1991) AUTHORS Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N and Awata...
NM_001285465.1 -
Sus scrofa (pig) -
NCBI
AUTHORS Prosser HM, Koike-Yusa H, Cooper JD, Law FC and Bradley A. TITLE A resource of vectors and ES cells for targeted deletion of microRNAs in mice JOURNAL Nat Biotechnol 29 (9), 840-845 (2011) PUBMED 21822254 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 82) AUTHORS Aoi W, Naito Y, Mizushima K, Takanami Y, Kawai Y, Ichikawa H and Yoshikawa T. TITLE The microRNA miR-696 regulates PGC-1{alpha} in mouse skeletal muscle in response to physical activity JOURNAL Am J Physiol Endocrinol Metab 298 (4), E799-E806 (2010) PUBMED 20086200 REFERENCE 5 (bases 1 to 82) AUTHORS van Rooij...
N, Hagos S, Alshahid M, Meyer BF, Morahan G and Dzimiri N. TITLE A common variant association study in ethnic Saudi Arabs reveals novel susceptibility loci for hypertriglyceridemia JOURNAL Clin Genet 91 (3), 371-378 (2017) PUBMED 27599772 REFERENCE 2 (bases 1 to 1972) AUTHORS Satoh T, Kidoya H, Naito H, Yamamoto M, Takemura N, Nakagawa K, Yoshioka Y, Morii E, Takakura N, Takeuchi O and Akira S. TITLE Critical role of Trib1 in differentiation of tissue-resident M2-like macrophages JOURNAL Nature 495 (7442), 524-528 (2013) PUBMED 23515163 REFERENCE 3 (bases 1 to 1972) AUTHORS Dedhia PH, Keeshan...
inference="alignment:Splign:2.1.0" exon 3881..3999 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 4000..5206 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 5206) AUTHORS Inokuchi J, Komiya M, Baba I, Naito S, Sasazuki T and Shirasawa S. TITLE Deregulated expression of KRAP, a novel gene encoding actin-interacting protein, in human colon cancer cells JOURNAL J Hum Genet 49 (1), 46-52 (2004) PUBMED 14673706...
Splign:2.1.0" exon 671..789 /gene="AQP7" /inference="alignment:Splign:2.1.0" exon 790..1007 /gene="AQP7" /inference="alignment:Splign:2.1.0" exon 1008..1334 /gene="AQP7" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1349) AUTHORS Fujii T, Hirayama H, Fukuda S, Kageyama S, Naito A, Yoshino H, Moriyasu S, Yamazaki T, Sakamoto K, Hayakawa H, Takahashi K, Takahashi Y and Sawai K. TITLE Expression and localization of aquaporins 3 and 7 in bull spermatozoa and their relevance to sperm motility after cryopreservation JOURNAL J. Reprod. Dev. 64 (4), 327-335 (2018) PUBMED...
NM_001076378.2 -
Bos taurus (domestic cattle) -
NCBI
S., Sugimura,T., Serikawa,T. and Ushijima,T. TITLE Sparse and wavy hair: a new model for hypoplasia of hair follicle and mammary glands on rat chromosome 17 JOURNAL J Hered 96 (4), 339-345 (2005) PUBMED 15829729 REFERENCE 5 (bases 1 to 4882) AUTHORS Ohazama,A., Courtney,J.M., Tucker,A.S., Naito,A., Tanaka,S., Inoue,J. and Sharpe,P.T. TITLE Traf6 is essential for murine tooth cusp morphogenesis JOURNAL Dev Dyn 229 (1), 131-135 (2004) PUBMED 14699584 REFERENCE 6 (bases 1 to 4882) AUTHORS Crocker,M. and Cattanach,B.M. TITLE The genetics of Sleek: a possible regulatory mutation of the tabby-...
alignment:Splign:2.1.0" exon 1402..1494 /gene="FZR1" /gene_synonym="CDH1; FYR; FZR" /inference="alignment:Splign:2.1.0" exon 1495..1603 /gene="FZR1" /gene_synonym="CDH1; FYR; FZR" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1603) AUTHORS Yamamuro T, Kano K and Naito K. TITLE Functions of FZR1 and CDC20, activators of the anaphase-promoting complex, during meiotic maturation of swine oocytes JOURNAL Biol. Reprod. 79 (6), 1202-1209 (2008) PUBMED 18753608 REMARK GeneRIF: porcine FZR1 and CDC20 work on the maintenance of meiotic arrest at the first meiotic prophase and on...
Synonym: CDH1; FYR; FZR
NM_001012296.2 -
Sus scrofa (pig) -
NCBI
VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation JOURNAL Cell Discov 4, 10 (2018) PUBMED 29507755 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 1620) AUTHORS Horiuchi K, Kawamura T, Iwanari H, Ohashi R, Naito M, Kodama T and Hamakubo T. TITLE Identification of Wilms' tumor 1-associating protein complex and its role in alternative splicing and the cell cycle JOURNAL J Biol Chem 288 (46), 33292-33302 (2013) PUBMED 24100041 REFERENCE 7 (bases 1 to 1620) AUTHORS Ahmed F, Torrado M, Zinovieva RD, Senatorov...
VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation JOURNAL Cell Discov 4, 10 (2018) PUBMED 29507755 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 1686) AUTHORS Horiuchi K, Kawamura T, Iwanari H, Ohashi R, Naito M, Kodama T and Hamakubo T. TITLE Identification of Wilms' tumor 1-associating protein complex and its role in alternative splicing and the cell cycle JOURNAL J Biol Chem 288 (46), 33292-33302 (2013) PUBMED 24100041 REFERENCE 7 (bases 1 to 1686) AUTHORS Ahmed F, Torrado M, Zinovieva RD, Senatorov...
MIR3714" /replace="c" /replace="t" /db_xref="dbSNP:1024568432" variation 60 /gene="MIR3714" /replace="c" /replace="t" /db_xref="dbSNP:2124944218" variation 62 /gene="MIR3714" /replace="c" /replace="t" /db_xref="dbSNP:1034072337" ORIGIN // REFERENCE 1 (bases 1 to 65) AUTHORS Enomoto Y, Takagi R, Naito Y, Kiniwa T, Tanaka Y, Hamada-Tsutsumi S, Kawano M, Matsushita S, Ochiya T and Miyajima A. TITLE Identification of the novel 3' UTR sequences of human IL-21 mRNA as potential targets of miRNAs JOURNAL Sci Rep 7 (1), 7780 (2017) PUBMED 28798470 REMARK Publication Status: Online-Only REFERENCE 2...
CP, Sonstegard TS, Marcais G, Roberts M, Subramanian P, Yorke JA and Salzberg SL. TITLE A whole-genome assembly of the domestic cow, Bos taurus JOURNAL Genome Biol. 10 (4), R42 (2009) PUBMED 19393038 REFERENCE 4 (bases 1 to 1588) AUTHORS Sato J, Sato R, Takagi A, Goto T, Okada K, Yasuda J and Naito Y. TITLE Association between changes in plasma calcium concentration and plasma tartrate-resistant acid phosphatase activity in periparturient cows JOURNAL J. Vet. Med. Sci. 65 (2), 291-293 (2003) PUBMED 12655132 REMARK GeneRIF: Cows with a low tartrate-resistant acid phosphatase (TRAP) activity are...
Synonym: TRAP
NM_001256558.1 -
Bos taurus (domestic cattle) -
NCBI
exon 616..741 /gene="Mnat1" /inference="alignment:Splign:2.1.0" exon 742..863 /gene="Mnat1" /inference="alignment:Splign:2.1.0" exon 864..1302 /gene="Mnat1" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1334) AUTHORS Fujii,W., Nishimura,T., Kano,K., Sugiura,K. and Naito,K. TITLE CDK7 and CCNH are components of CDK-activating kinase and are required for meiotic progression of pig oocytes JOURNAL Biol Reprod 85 (6), 1124-1132 (2011) PUBMED 21778139 REFERENCE 2 (bases 1 to 1334) AUTHORS Egly,J.M. and Coin,F. TITLE A history of TFIIH: two decades of molecular biology on a...
MIR378I" /replace="a" /replace="g" /db_xref="dbSNP:1221661296" variation 70 /gene="MIR378I" /replace="c" /replace="t" /db_xref="dbSNP:1346007902" variation 76 /gene="MIR378I" /replace="a" /replace="g" /db_xref="dbSNP:2518788228" ORIGIN // REFERENCE 1 (bases 1 to 76) AUTHORS Enomoto Y, Takagi R, Naito Y, Kiniwa T, Tanaka Y, Hamada-Tsutsumi S, Kawano M, Matsushita S, Ochiya T and Miyajima A. TITLE Identification of the novel 3' UTR sequences of human IL-21 mRNA as potential targets of miRNAs JOURNAL Sci Rep 7 (1), 7780 (2017) PUBMED 28798470 REMARK Publication Status: Online-Only REFERENCE 2...
variation 66 /gene="MIR4476" /gene_synonym="mir-4476" /replace="c" /replace="t" /db_xref="dbSNP:1008364367" variation 67 /gene="MIR4476" /gene_synonym="mir-4476" /replace="c" /replace="t" /db_xref="dbSNP:1563939566" ORIGIN // REFERENCE 1 (bases 1 to 70) AUTHORS Enomoto Y, Takagi R, Naito Y, Kiniwa T, Tanaka Y, Hamada-Tsutsumi S, Kawano M, Matsushita S, Ochiya T and Miyajima A. TITLE Identification of the novel 3' UTR sequences of human IL-21 mRNA as potential targets of miRNAs JOURNAL Sci Rep 7 (1), 7780 (2017) PUBMED 28798470 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 70)...
MIR4481" /replace="c" /replace="t" /db_xref="dbSNP:565897165" variation 57 /gene="MIR4481" /replace="a" /replace="g" /db_xref="dbSNP:751390308" variation 60 /gene="MIR4481" /replace="a" /replace="c" /db_xref="dbSNP:2132516782" ORIGIN // REFERENCE 1 (bases 1 to 60) AUTHORS Enomoto Y, Takagi R, Naito Y, Kiniwa T, Tanaka Y, Hamada-Tsutsumi S, Kawano M, Matsushita S, Ochiya T and Miyajima A. TITLE Identification of the novel 3' UTR sequences of human IL-21 mRNA as potential targets of miRNAs JOURNAL Sci Rep 7 (1), 7780 (2017) PUBMED 28798470 REMARK Publication Status: Online-Only REFERENCE 2...
analyses of zebrafish miRNA and mRNA expression profiles identify miR-29b and miR-223 as potential regulators of optic nerve regeneration JOURNAL BMC Genomics 16 (1), 591 (2015) PUBMED 26265132 REMARK Publication Status: Online-Only REFERENCE 7 (bases 1 to 2713) AUTHORS Aoki M, Segawa H, Naito M and Okamoto H. TITLE Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons JOURNAL Biochem Biophys Res Commun 445 (2), 357-362 (2014) PUBMED 24513284 REFERENCE 8 (bases 1 to 2713) AUTHORS Dee CT, Hirst CS, Shih YH, Tripathi VB, Patient RK...
Synonym: nefm; zgc:158491
NM_001123280.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
exon 1485..1626 /gene="TGFBR2" /inference="alignment:Splign:2.1.0" exon 1627..1754 /gene="TGFBR2" /inference="alignment:Splign:2.1.0" exon 1755..4279 /gene="TGFBR2" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 4279) AUTHORS Hirayama H, Koyama K, Sawai K, Fujii T, Naito A, Fukuda S and Kageyama S. TITLE Localization of TGF-beta and TGF-beta receptor in bovine term placentome and expression differences between spontaneous and induced parturition JOURNAL Placenta 36 (11), 1239-1245 (2015) PUBMED 26382756 REMARK GeneRIF: found in binucleate cells of placenta REFERENCE 2...
NM_001159566.2 -
Bos taurus (domestic cattle) -
NCBI
gene="Tro" /inference="alignment:Splign:2.1.0" exon 1908..5419 /gene="Tro" /inference="alignment:Splign:2.1.0" exon 5420..5630 /gene="Tro" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 5630) AUTHORS Saburi,S., Nadano,D., Akama,T.O., Hirama,K., Yamanouchi,K., Naito,K., Tojo,H., Tachi,C. and Fukuda,M.N. TITLE The trophinin gene encodes a novel group of MAGE proteins, magphinins, and regulates cell proliferation during gametogenesis in the mouse JOURNAL J Biol Chem 276 (52), 49378-49389 (2001) PUBMED 11590179...
TITLE Difference in expression of hepatic microRNAs miR-29c, miR-34a, miR-155, and miR-200b is associated with strain-specific susceptibility to dietary nonalcoholic steatohepatitis in mice JOURNAL Lab Invest 90 (10), 1437-1446 (2010) PUBMED 20548288 REFERENCE 7 (bases 1 to 76) AUTHORS Aoi W, Naito Y, Mizushima K, Takanami Y, Kawai Y, Ichikawa H and Yoshikawa T. TITLE The microRNA miR-696 regulates PGC-1{alpha} in mouse skeletal muscle in response to physical activity JOURNAL Am J Physiol Endocrinol Metab 298 (4), E799-E806 (2010) PUBMED 20086200 REFERENCE 8 (bases 1 to 76) AUTHORS van Rooij E...
Cell Oncol (Dordr) 46 (2), 283-297 (2023) PUBMED 36454514 REMARK GeneRIF: Nucleotide sugar transporter SLC35A2 is involved in promoting hepatocellular carcinoma metastasis by regulating cellular glycosylation. REFERENCE 3 (bases 1 to 2616) AUTHORS Hayashi,Y., Ito,Y., Yanagiba,Y., Kamijima,M., Naito,H. and Nakajima,T. TITLE Differences in metabolite burden of di(2-ethylhexyl)phthalate in pregnant and postpartum dams and their offspring in relation to drug-metabolizing enzymes in mice JOURNAL Arch Toxicol 86 (4), 563-569 (2012) PUBMED 22159897 REMARK GeneRIF: DEHP exposure did not influence...
and Nagai,R. TITLE Kruppel-like zinc-finger transcription factor KLF5/BTEB2 is a target for angiotensin II signaling and an essential regulator of cardiovascular remodeling JOURNAL Nat Med 8 (8), 856-863 (2002) PUBMED 12101409 REFERENCE 5 (bases 1 to 6587) AUTHORS Nagai,N., Nakano,K., Sado,Y., Naito,I., Gunduz,M., Tsujigiwa,H., Nagatsuka,H., Ninomiya,Y. and Siar,C.H. TITLE Localization of type IV collagen a 1 to a 6 chains in basement membrane during mouse molar germ development JOURNAL Int J Dev Biol 45 (7), 827-831 (2001) PUBMED 11732842 REFERENCE 6 (bases 1 to 6587) AUTHORS Bhatt,R.S.,...
of the chicken retina JOURNAL Gene Expr Patterns 9 (5), 306-313 (2009) PUBMED 19272464 REMARK GeneRIF: Results suggest that Fgf19 is expressed by the early migratory horizontal precursors, and later by the presumptive axon-bearing HCs. REFERENCE 4 (bases 1 to 2256) AUTHORS Okamoto M, Tomonari S, Naito Y, Saigo K, Noji S, Ui-Tei K and Ohuchi H. TITLE Introduction of silencing-inducing transgene against Fgf19 does not affect expression of Tbx5 and beta3-tubulin in the developing chicken retina JOURNAL Dev Growth Differ 50 (3), 159-168 (2008) PUBMED 18312426 REMARK GeneRIF: Fgf19 is not required...
Synonym: FGF-19
NM_204674.3 -
Gallus gallus (chicken) -
NCBI -
UCSC
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0.273 | 0.005 | cgi_end;
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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