2025-05-09 17:03:24, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_194359 5172 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens ring finger protein 41 (RNF41), transcript variant 3, mRNA. ACCESSION NM_194359 VERSION NM_194359.2 GI:338827615 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5172) AUTHORS Zhou,A., Pan,D., Yang,X. and Zhou,J. TITLE Overexpression of Nrdp1/FLRF sensitizes cells to oxidative stress JOURNAL Biochem. Biophys. Res. Commun. 410 (4), 771-774 (2011) PUBMED 21693106 REMARK GeneRIF: these data provide insights into understanding the potential role of Nrdp1 in cell growth, apoptosis and oxidative stress, and in the pathogenesis of Parkinson's disease. REFERENCE 2 (bases 1 to 5172) AUTHORS Fry,W.H., Simion,C., Sweeney,C. and Carraway,K.L. III. TITLE Quantity control of the ErbB3 receptor tyrosine kinase at the endoplasmic reticulum JOURNAL Mol. Cell. Biol. 31 (14), 3009-3018 (2011) PUBMED 21576364 REMARK GeneRIF: Data demonstrate that Nrdp1 preferentially associates with the nascent form of ErbB3 to accelerate its degradation, and that the two proteins colocalize at the endoplasmic reticulum. REFERENCE 3 (bases 1 to 5172) AUTHORS Wauman,J., De Ceuninck,L., Vanderroost,N., Lievens,S. and Tavernier,J. TITLE RNF41 (Nrdp1) controls type 1 cytokine receptor degradation and ectodomain shedding JOURNAL J. Cell. Sci. 124 (PT 6), 921-932 (2011) PUBMED 21378310 REMARK GeneRIF: RNF41 interacts with JAK2-associated cytokine receptor complexes and modulates their cell surface exposure and signalling. REFERENCE 4 (bases 1 to 5172) AUTHORS Ingalla,E.Q., Miller,J.K., Wald,J.H., Workman,H.C., Kaur,R.P., Yen,L., Fry,W.H., Borowsky,A.D., Young,L.J., Sweeney,C. and Carraway,K.L. III. TITLE Post-transcriptional mechanisms contribute to the suppression of the ErbB3 negative regulator protein Nrdp1 in mammary tumors JOURNAL J. Biol. Chem. 285 (37), 28691-28697 (2010) PUBMED 20628057 REMARK GeneRIF: Post-transcriptional mechanisms contribute to the suppression of the ErbB3 negative regulator protein Nrdp1 in mammary tumors. REFERENCE 5 (bases 1 to 5172) AUTHORS Chen,L., Siddiqui,S., Bose,S., Mooso,B., Asuncion,A., Bedolla,R.G., Vinall,R., Tepper,C.G., Gandour-Edwards,R., Shi,X., Lu,X.H., Siddiqui,J., Chinnaiyan,A.M., Mehra,R., Devere White,R.W., Carraway,K.L. III and Ghosh,P.M. TITLE Nrdp1-mediated regulation of ErbB3 expression by the androgen receptor in androgen-dependent but not castrate-resistant prostate cancer cells JOURNAL Cancer Res. 70 (14), 5994-6003 (2010) PUBMED 20587519 REMARK GeneRIF: Observations point to a model of CRPC development in which progression of PCa to castration resistance is associated with the inability of AR to transcriptionally regulate Nrdp1, and predict that inhibition of ErbB3 during AW may impair CRPC development. REFERENCE 6 (bases 1 to 5172) AUTHORS Brajenovic,M., Joberty,G., Kuster,B., Bouwmeester,T. and Drewes,G. TITLE Comprehensive proteomic analysis of human Par protein complexes reveals an interconnected protein network JOURNAL J. Biol. Chem. 279 (13), 12804-12811 (2004) PUBMED 14676191 REFERENCE 7 (bases 1 to 5172) AUTHORS Qiu,X.B., Markant,S.L., Yuan,J. and Goldberg,A.L. TITLE Nrdp1-mediated degradation of the gigantic IAP, BRUCE, is a novel pathway for triggering apoptosis JOURNAL EMBO J. 23 (4), 800-810 (2004) PUBMED 14765125 REMARK GeneRIF: Nrdp1 can be important in the initiation of apoptosis by catalyzing ubiquitination and degradation of BRUCE. REFERENCE 8 (bases 1 to 5172) AUTHORS Qiu,X.B. and Goldberg,A.L. TITLE Nrdp1/FLRF is a ubiquitin ligase promoting ubiquitination and degradation of the epidermal growth factor receptor family member, ErbB3 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (23), 14843-14848 (2002) PUBMED 12411582 REMARK Erratum:[Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):17220.] REFERENCE 9 (bases 1 to 5172) AUTHORS Diamonti,A.J., Guy,P.M., Ivanof,C., Wong,K., Sweeney,C. and Carraway,K.L. III. TITLE An RBCC protein implicated in maintenance of steady-state neuregulin receptor levels JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (5), 2866-2871 (2002) PUBMED 11867753 REFERENCE 10 (bases 1 to 5172) AUTHORS Abdullah,J.M., Li,X., Nachtman,R.G. and Jurecic,R. TITLE FLRF, a novel evolutionarily conserved RING finger gene, is differentially expressed in mouse fetal and adult hematopoietic stem cells and progenitors JOURNAL Blood Cells Mol. Dis. 27 (1), 320-333 (2001) PUBMED 11358394 COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from BP201682.1, BC032637.1 and AC073896.41. On Jun 30, 2011 this sequence version replaced gi:37588860. Summary: This gene encodes an E3 ubiquitin ligase. The encoded protein plays a role in type 1 cytokine receptor signaling by controlling the balance between JAK2-associated cytokine receptor degradation and ectodomain shedding. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2011]. Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 3 and 4 encode the same protein. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC032637.1, AK314811.1 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025084, ERS025088 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-386 BP201682.1 1-386 387-2189 BC032637.1 340-2142 2190-5172 AC073896.41 128296-131278 FEATURES Location/Qualifiers source 1..5172 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="12" /map="12q13.13" gene 1..5172 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /note="ring finger protein 41" /db_xref="GeneID:10193" /db_xref="HGNC:18401" /db_xref="HPRD:11520" exon 1..67 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /inference="alignment:Splign:1.39.8" exon 68..252 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /inference="alignment:Splign:1.39.8" exon 253..365 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /inference="alignment:Splign:1.39.8" misc_feature 270..272 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /note="upstream in-frame stop codon" CDS 276..1229 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /EC_number="6.3.2.-" /note="isoform 1 is encoded by transcript variant 3; neuregulin receptor degradation protein-1; fetal liver ring finger; E3 ubiquitin-protein ligase NRDP1" /codon_start=1 /product="E3 ubiquitin-protein ligase NRDP1 isoform 1" /protein_id="NP_919340.1" /db_xref="GI:37588861" /db_xref="CCDS:CCDS8909.1" /db_xref="GeneID:10193" /db_xref="HGNC:18401" /db_xref="HPRD:11520" /translation="
MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI
" misc_feature 315..449 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /note="Zinc finger, C3HC4 type (RING finger); Region: zf-C3HC4_2; pfam13923" /db_xref="CDD:206094" misc_feature 327..440 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /note="RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably...; Region: RING; cd00162" /db_xref="CDD:238093" misc_feature order(327..329,336..338,375..377,381..383,390..392, 399..401,432..434) /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /note="cross-brace motif; other site" /db_xref="CDD:238093" misc_feature 684..1220 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /note="USP8 interacting; Region: USP8_interact; pfam08941" /db_xref="CDD:149875" exon 366..637 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /inference="alignment:Splign:1.39.8" exon 638..773 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /inference="alignment:Splign:1.39.8" exon 774..877 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /inference="alignment:Splign:1.39.8" exon 878..5172 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /inference="alignment:Splign:1.39.8" variation 932 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /replace="a" /replace="g" /db_xref="dbSNP:703822" STS 2493..3283 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /standard_name="RNF41_1849" /db_xref="UniSTS:280974" STS 2956..3102 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /standard_name="A002D43" /db_xref="UniSTS:3098" STS 2956..3102 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /standard_name="G19966" /db_xref="UniSTS:3099" polyA_signal 3149..3154 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" polyA_site 3175 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" variation 3416 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /replace="a" /replace="g" /db_xref="dbSNP:773654" STS 3694..3796 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /standard_name="D11S3114" /db_xref="UniSTS:152207" STS 3739..4158 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /standard_name="D10S16" /db_xref="UniSTS:155756" STS 3773..4179 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /standard_name="D8S2278" /db_xref="UniSTS:473906" STS 3773..3875 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /standard_name="D8S2278" /db_xref="UniSTS:473906" STS 3778..4171 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /standard_name="D8S2279" /db_xref="UniSTS:473907" STS 3778..3867 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /standard_name="D8S2279" /db_xref="UniSTS:473907" STS 3833..4226 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /standard_name="PMC156606P1" /db_xref="UniSTS:271408" STS 3847..4026 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /standard_name="GDB:434012" /db_xref="UniSTS:157204" variation 3877 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /replace="c" /replace="t" /db_xref="dbSNP:773655" STS 3922..4096 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /standard_name="L17971" /db_xref="UniSTS:43966" variation 3940 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /replace="a" /replace="g" /db_xref="dbSNP:773656" STS 4084..4179 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /standard_name="D8S2278" /db_xref="UniSTS:473906" variation 4481 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" /replace="a" /replace="g" /db_xref="dbSNP:773657" polyA_site 5172 /gene="RNF41" /gene_synonym="FLRF; NRDP1; SBBI03" ORIGIN
gagcttccgccgggttgcgtagcagcggtgggcggggcaaaggatccgtctgaggcggcgacgagtgagtactcctgattgtgacatcacattcatcccctgggcgatggagcttgtcactgggaaggaatactcagtcggagaatagccaacaagatgggttactgggagaatctcttcagtggcactgagtggaggcatcagggggttggagccttgtgaacagggaacctgccccccaacacttggaaggacctgggtttcagtgatgagacatggggtatgatgtaacccgtttccagggggatgttgacgaagatcttatctgccctatttgcagtggagtcttggaggagccagtacaggcacctcattgtgaacatgctttctgcaacgcctgcatcacccagtggttctctcagcaacagacatgtccagtggaccgtagtgttgtgacggtcgcccatctgcgcccagtacctcggatcatgcggaacatgttgtcaaagctgcagattgcctgtgacaacgctgtgttcggctgtagtgccgttgtccggcttgacaacctcatgtctcacctcagcgactgtgagcacaacccgaagcggcctgtgacctgtgaacagggctgtggcctggagatgcccaaagatgagctgcccaaccataactgcattaagcacctgcgctcagtggtacagcagcagcagacacgcatcgcagagctggagaagacgtcagctgaacacaaacaccagctggcggagcagaagcgagacatccagctgctaaaggcatacatgcgtgcaatccgcagtgtcaaccccaaccttcagaacctggaggagacaattgaatacaacgagatcctagagtgggtgaactcccttcagccagcaagagtgacccgctggggagggatgatctcgactcctgatgctgtgctccaggctgtaatcaagcgctccctggtggagagtggctgtcctgcttctattgtcaacgagctgattgaaaatgcccacgagcgtagctggccccagggtctggccacactagagactagacagatgaaccgacgctactatgagaactacgtggccaagcgcatccctggcaagcaggctgttgtcgtgatggcctgtgagaaccagcacatgggggatgacatggtgcaagagccaggccttgtcatgatatttgcgcatggcgtggaagagatataagagaactcgactggctatcaggaagagatggaaatcagaaaatcccatcactccagcagctgggacctgagtcctacccaccattcttaatactgtggcttatacctgagccacacatctccctgcccttctggcactgaagggccttggggtagtttgctcagcctttcaggtgggaaacccagatttcctccctttgccatattcccctaaaatgtctataaattatcagtctgggtgggaaagcccccacctccatccattttcctgcttagggtccctggttccagttattttcagaaagcacaaagagattcaatttccctggaggatcaggacagaggaaggaatctctaatcgtccctctcctccaaaaccagggaatcagagcagtcaggcctgttgactctaagcagcagacatcctgaagaaatggtaagggtggagccaaatctctagaaataagtagtgaggccgttaattggccatcactgatggcccttagggaaagactggacctctgtgccaagcagtatccctgttcagcccaccttaaaggtgtaggcacccactgggtctaccagtatgcaggttgggatactgaaaatttccagatgagctcttctttcctacaagttttcataattagggaatgccagggtttagggtaggggttaatctgttgggggttgatgtgtttagcaagaagctactcctagcttttgctaaaatatggttggcactgcctcttgtggcacaggccataattgttccatagacccctctctagccctgtgactgtagttagttactttgataattttctttggccattgtttgtttatatttcacaaactccacctactgcccccccccctcttttttttaagaatggcctgatcatggctatctcagccacattgttggcaatttaatttatttacttcctttttttttttttaagaaaggaaaaaagaaaaaaaaatcaaacttgaaacttttcttttgatgttcctattgtgggggttctggatagggtgggacagggatgggggtgtgttttatattttttccttttcagcacaacctttggctttaatataggaagagccaagggagtcctcggctgaacttacgatatctgccccaaacctctgtaaccccaactgaaatgaggagcttcctctcttcctgtgaaggatatgacagtccagcatcgatgcctgtgccctctggaaaaatttcctcctagcccttccagggccttatcataaaactctggatttagagtattcattttgaaggcaactcccccttccccaagtttccttggagctgtatagctgggttctaagcttcaccatgcaaatcagaaattttatctctaagtacaggctgtgccgtgtctcacccacacccccctggggacttcagttccatttcaggttacctggggtataccttgatccctagagtgactggcagagtaagagaaggggagagataataggtgtgattattttaatatggaggtgggagtgtggttggagatagaaaggctcctccccaccatgtaatggcttcctctcagaattttattccaggctagcttgctgcaggtctgggtagttggatcatggctccactgggattggggtggaaagcttgaggggagtagggttccagctctgggacattgtgctcaggaatttgaaaacgctgctatacttactctggttactacatttcttccactcccctttcccctacctgccttaaccaaggctcatactgtcctgtccttaccctcagatggagccaggaagctcagtgaaaggcttccctaccctttgcactagtgtctctgcaggttgctggttgtgttgtatgtgctgttccatggtgttgactgcactaataataaaccttttactcaactctctaaattcttcagcattactccctttcttgagaaggtttcccctctgcttttgcctttctctcaccttaattccctttcttccttactttgttacctacccttatcttagtgctaacttctctttcaggaggatgtctgggagtagtgtgcacttcacagctgctttcccatgtaccctcctgcattcttccctcctatctcctgttctgtagcagccaaagctctctagtgatctgaactgtgtgcttcccagggtctgcctttatcctaaattccatgtcttccctgagtggtcctgagtttttgggataatttctacagaagatatgtatatatctttttcctttgtcccacaagcaactttgctttagaatctagaattcctttgcaggcagagaagtctctacctcccagtgtttcctagctaagaacgtaaatgtgaggagggaaatgtacttgcagaggtttcataattatttacttataaaaatagtcttcatagccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtcaggagttcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcaggcacctgtagtcccagctacttaggaggctgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgagcagagattgggccactgcattccagcctgggcgacagagcaaggctccgtctaaaaaaaaaaaaaaaaaaaaaagtcttcataggccgggcacggtggctcacgtctgtaatcccagcactttgggaggccaaggtgggtggatcacaacgtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaaaatataaataaattagccggacaggcgcctgtcctcccagctactcaggaggctgaggcaggagaatggtgtgaacctgggaggcggagcttgcagtgagctgagatcacgccactgcactccagcctgggcaacagagcaagactccgtctcaaaaaaaaaaaaaaaaaaaccagtcttcataagtatttgctgctacctttccctgtcataagaaaaaggatagccagacatggtgggacgccactatgatcccagctccttggaaggctaaggcacaagaatcgcttgaacctgggaggtggaggttgcagtgagctgagatcatgccactgcactccagcctggtgacagagcaagagcctgtctcaaaaaaaaaaaagaaaagaaaagaaaaagggatatcttttcctcctcccagaagtttgttttaaatttgagcatttatcatgcacctgatgtaaacctaatagtactcttgatactctagtggcttgaaaaaaaaaaaaaaggcatttctgtgctgagtctgcgcttctatgcacacaaggtatgtttataaaatactgataagcatgtcacagtatagagcataagaggcaatgtatgtatcctagtgacattagcagtgcttttccccccttaaactcctttaaaattacttttagaacttgctgctcattcttgtgaatgttatgaatggtgtcatattgtccttttacagaagatacgatttttagaaacaaatattcattgaatgtctgccctgtgagatactcactagagtgaacatgaggaggcttatgtagcaaaatggcacctacctgcaaagaacttagtccctaatggagatgaatatataataagggatcataaatgtgctaagtggatttactagtaatatgtgagccaaggacgataaagctcctgattctgatgggtatcaggaaaggcttttcaggaagtgttacttgttataggtcagaggtcagcaaactacaggttacaaccccactgcctgcttttgtaaaaaactttattggaatacagttatgcccacttgtttata
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ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:10193 -> Molecular function: GO:0004842 [ubiquitin-protein ligase activity] evidence: IDA GeneID:10193 -> Molecular function: GO:0004842 [ubiquitin-protein ligase activity] evidence: TAS GeneID:10193 -> Molecular function: GO:0005128 [erythropoietin receptor binding] evidence: IEA GeneID:10193 -> Molecular function: GO:0005135 [interleukin-3 receptor binding] evidence: IEA GeneID:10193 -> Molecular function: GO:0005515 [protein binding] evidence: IPI GeneID:10193 -> Molecular function: GO:0008270 [zinc ion binding] evidence: IEA GeneID:10193 -> Molecular function: GO:0031386 [protein tag] evidence: IEA GeneID:10193 -> Biological process: GO:0000209 [protein polyubiquitination] evidence: IDA GeneID:10193 -> Biological process: GO:0008285 [negative regulation of cell proliferation] evidence: IDA GeneID:10193 -> Biological process: GO:0030336 [negative regulation of cell migration] evidence: IMP GeneID:10193 -> Biological process: GO:0043408 [regulation of MAPK cascade] evidence: IDA GeneID:10193 -> Biological process: GO:0045619 [regulation of lymphocyte differentiation] evidence: IEA GeneID:10193 -> Biological process: GO:0045637 [regulation of myeloid cell differentiation] evidence: IEA GeneID:10193 -> Biological process: GO:0051896 [regulation of protein kinase B signaling cascade] evidence: IDA GeneID:10193 -> Biological process: GO:0097191 [extrinsic apoptotic signaling pathway] evidence: IDA GeneID:10193 -> Biological process: GO:2000377 [regulation of reactive oxygen species metabolic process] evidence: IMP GeneID:10193 -> Cellular component: GO:0005829 [cytosol] evidence: TAS ANNOTATIONS from NCBI Entrez Gene (20130726): NP_919340 -> EC 6.3.2.-
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