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2025-05-09 16:09:48, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001278312 4408 bp mRNA linear PRI 17-JUN-2013
DEFINITION Homo sapiens nucleoporin 155kDa (NUP155), transcript variant 3,
mRNA.
ACCESSION NM_001278312
VERSION NM_001278312.1 GI:509155836
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4408)
AUTHORS Tarazon,E., Rivera,M., Rosello-Lleti,E., Molina-Navarro,M.M.,
Sanchez-Lazaro,I.J., Espana,F., Montero,J.A., Lago,F.,
Gonzalez-Juanatey,J.R. and Portoles,M.
TITLE Heart failure induces significant changes in nuclear pore complex
of human cardiomyocytes
JOURNAL PLoS ONE 7 (11), E48957 (2012)
PUBMED 23152829
REFERENCE 2 (bases 1 to 4408)
AUTHORS Parvez,B. and Darbar,D.
TITLE The 'missing' link in atrial fibrillation heritability
JOURNAL J Electrocardiol 44 (6), 641-644 (2011)
PUBMED 21924735
REFERENCE 3 (bases 1 to 4408)
AUTHORS Kehat,I., Accornero,F., Aronow,B.J. and Molkentin,J.D.
TITLE Modulation of chromatin position and gene expression by HDAC4
interaction with nucleoporins
JOURNAL J. Cell Biol. 193 (1), 21-29 (2011)
PUBMED 21464227
REMARK GeneRIF: The Nup155-mediated localization was required for HDAC4's
effect on gene expression.
REFERENCE 4 (bases 1 to 4408)
AUTHORS Mitchell,J.M., Mansfeld,J., Capitanio,J., Kutay,U. and Wozniak,R.W.
TITLE Pom121 links two essential subcomplexes of the nuclear pore complex
core to the membrane
JOURNAL J. Cell Biol. 191 (3), 505-521 (2010)
PUBMED 20974814
REMARK GeneRIF: The Nup155 depletion massively alters nuclear envelope
structure, causing a dramatic decrease in Nuclear pore complexes
numbers and the improper targeting of membrane proteins to the
inner nuclear membrane.
REFERENCE 5 (bases 1 to 4408)
AUTHORS Rayala,H.J., Kendirgi,F., Barry,D.M., Majerus,P.W. and Wente,S.R.
TITLE The mRNA export factor human Gle1 interacts with the nuclear pore
complex protein Nup155
JOURNAL Mol. Cell Proteomics 3 (2), 145-155 (2004)
PUBMED 14645504
REFERENCE 6 (bases 1 to 4408)
AUTHORS Le Rouzic,E., Mousnier,A., Rustum,C., Stutz,F., Hallberg,E.,
Dargemont,C. and Benichou,S.
TITLE Docking of HIV-1 Vpr to the nuclear envelope is mediated by the
interaction with the nucleoporin hCG1
JOURNAL J. Biol. Chem. 277 (47), 45091-45098 (2002)
PUBMED 12228227
REFERENCE 7 (bases 1 to 4408)
AUTHORS Zhang,X., Yang,H., Yu,J., Chen,C., Zhang,G., Bao,J., Du,Y.,
Kibukawa,M., Li,Z., Wang,J., Hu,S., Dong,W., Wang,J., Gregersen,N.,
Niebuhr,E. and Bolund,L.
TITLE Genomic organization, transcript variants and comparative analysis
of the human nucleoporin 155 (NUP155) gene
JOURNAL Gene 288 (1-2), 9-18 (2002)
PUBMED 12034489
REFERENCE 8 (bases 1 to 4408)
AUTHORS Shiota,C., Coffey,J., Grimsby,J., Grippo,J.F. and Magnuson,M.A.
TITLE Nuclear import of hepatic glucokinase depends upon glucokinase
regulatory protein, whereas export is due to a nuclear export
signal sequence in glucokinase
JOURNAL J. Biol. Chem. 274 (52), 37125-37130 (1999)
PUBMED 10601273
REFERENCE 9 (bases 1 to 4408)
AUTHORS Zhang,X., Yang,H., Corydon,M.J., Zhang,X., Pedersen,S.,
Korenberg,J.R., Chen,X.N., Laporte,J., Gregersen,N., Niebuhr,E.,
Liu,G. and Bolund,L.
TITLE Localization of a human nucleoporin 155 gene (NUP155) to the 5p13
region and cloning of its cDNA
JOURNAL Genomics 57 (1), 144-151 (1999)
PUBMED 10191094
REFERENCE 10 (bases 1 to 4408)
AUTHORS Gorlich,D. and Mattaj,I.W.
TITLE Nucleocytoplasmic transport
JOURNAL Science 271 (5255), 1513-1518 (1996)
PUBMED 8599106
REMARK Review article
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from DC401967.1, AK315028.1,
BM478072.1, AK297143.1, AI037962.1 and BQ435836.1.
Summary: Nucleoporins are proteins that play an important role in
the assembly and functioning of the nuclear pore complex (NPC)
which regulates the movement of macromolecules across the nuclear
envelope (NE). The protein encoded by this gene plays a role in the
fusion of NE vesicles and formation of the double membrane NE. The
protein may also be involved in cardiac physiology and may be
associated with the pathogenesis of atrial fibrillation.
Alternative splicing results in multiple transcript variants of
this gene. A pseudogene associated with this gene is located on
chromosome 6. [provided by RefSeq, May 2013].
Transcript Variant: This variant (3) lacks an alternate in-frame
exon in the 3' coding region compared to variant 1. It encodes
isoform 3 which lacks an internal segment and is shorter, compared
to isoform 1.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: AK315028.1 [ECO:0000332]
RNAseq introns :: mixed/partial sample support
ERS025081, ERS025082 [ECO:0000350]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-102 DC401967.1 1-102
103-349 AK315028.1 58-304
350-350 BM478072.1 254-254
351-1467 AK315028.1 306-1422
1468-2455 AK297143.1 1306-2293
2456-2781 AK315028.1 2411-2736
2782-4194 AK297143.1 2812-4224
4195-4379 AI037962.1 30-214 c
4380-4384 BQ435836.1 683-687
4385-4408 AI037962.1 1-24 c
FEATURES Location/Qualifiers
source 1..4408
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="5"
/map="5p13.1"
gene 1..4408
/gene="NUP155"
/gene_synonym="N155"
/note="nucleoporin 155kDa"
/db_xref="GeneID:9631"
/db_xref="HGNC:8063"
/db_xref="MIM:606694"
exon 1..306
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
CDS 150..4133
/gene="NUP155"
/gene_synonym="N155"
/note="isoform 3 is encoded by transcript variant 3;
nuclear pore complex protein Nup155; 155 kDa nucleoporin"
/codon_start=1
/product="nuclear pore complex protein Nup155 isoform 3"
/protein_id="NP_001265241.1"
/db_xref="GI:509155837"
/db_xref="GeneID:9631"
/db_xref="HGNC:8063"
/db_xref="MIM:606694"
/translation="
MPSSLLGAAMPASTSAAALQEALENAGRLIDRQLQEDRMYPDLSELLMVSAPNNPTVSGMSDMDYPLQGPGLLSVPNLPEISSIRRVPLPPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGLVKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLSGGMQLLPDPLYSLPTDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLLQFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQGMSRVASVSQNAIVSAAGNIARTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCPFRQPLARPNTLTLVHVRLPPGFSASSTVEKPSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQMTAGVDGHSWALSAIDELKVDKIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWATRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTPSHGIQPPAMSTPVCALGNPATQATNMSCVTGPEIVYSGKHNGICIYFSRIMGNIWDASLVVERIFKSGNREITAIESSVPCQLLESVLQELKGLQEFLDRNSQFAGGPLGNPNTTAKVQQRLIGFMRPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAELQKANELLQRSRQVQNKTEKERMLRESLKEYQKISNQVDLSNVCAQYRQVRFYEGVVELSLTAAEKKDPQGLGLHFYKHGEPEEDIVGLQAFQERLNSYKCITDTLQELVNQSKAAPQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDELFSIALYNWLIQVDLADKLLQVASPFLEPHLVRMAKVDQNRVRYMDLLWRYYEKNRSFSNAARVLSRLADMHSTEISLQQRLEYIARAILSAKSSTAISSIAADGEFLHELEEKMEVARIQLQIQETLQRQYSHHSSVQDAVSQLDSELMDITKLYGEFADPFKLAECKLAIIHCAGYSDPILVQTLWQDIIEKELSDSVTLSSSDRMHALSLKIVLLGKIYAGTPRFFPLDFIVQFLEQQVCTLNWDVGFVIQTMNEIGVPLPRLLEVYDQLFKSRDPFWNRMKKPLHLLDCIHVLLIRYVENPSQVLNCERRRFTNLCLDAVCGYLVELQSMSSSVAVQAITGNFKSLQAKLERLH
"
misc_feature 378..1676
/gene="NUP155"
/gene_synonym="N155"
/note="Nup133 N terminal like; Region: Nucleoporin_N;
pfam08801"
/db_xref="CDD:220023"
misc_feature 2247..>2603
/gene="NUP155"
/gene_synonym="N155"
/note="Non-repetitive/WGA-negative nucleoporin C-terminal;
Region: Nucleoporin_C; pfam03177"
/db_xref="CDD:217408"
misc_feature <2586..3722
/gene="NUP155"
/gene_synonym="N155"
/note="Non-repetitive/WGA-negative nucleoporin C-terminal;
Region: Nucleoporin_C; pfam03177"
/db_xref="CDD:217408"
exon 307..444
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 445..541
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 542..612
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 613..705
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 706..872
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 873..978
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 979..1052
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 1053..1144
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 1145..1242
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 1243..1395
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 1396..1496
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 1497..1667
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 1668..1778
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 1779..1873
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 1874..1962
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 1963..2025
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 2026..2173
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 2174..2240
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 2241..2356
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 2357..2454
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 2455..2585
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 2586..2724
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 2725..2860
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 2861..3014
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 3015..3119
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 3120..3274
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 3275..3404
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
STS 3331..3492
/gene="NUP155"
/gene_synonym="N155"
/standard_name="MARC_21512-21513:1032982746:3"
/db_xref="UniSTS:268564"
exon 3405..3518
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 3519..3639
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 3640..3750
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 3751..3887
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 3888..3994
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
exon 3995..4400
/gene="NUP155"
/gene_synonym="N155"
/inference="alignment:Splign:1.39.8"
polyA_signal 4172..4177
/gene="NUP155"
/gene_synonym="N155"
polyA_site 4195
/gene="NUP155"
/gene_synonym="N155"
/note="This is an internal site."
polyA_signal 4377..4382
/gene="NUP155"
/gene_synonym="N155"
polyA_site 4400
/gene="NUP155"
/gene_synonym="N155"
ORIGIN
atgaagcggaagtgcgtcatgtcgaggcgccaaggcgctcgtttggcgcgcgcgccctaggcggcggatctaagctaacttcttggatcttttcttgtttctccttggtttttgactttttctggaccctggtgtctacgatttccgagatgccgtcttctttgttgggcgcggcgatgccggcctctacatctgccgcagccctgcaggaagctctggaaaatgctggacggctcatcgaccgtcagttgcaagaggaccgcatgtacccggacctttccgagctgcttatggtgtctgccccaaataatcccaccgtttctggcatgtcagatatggattatcctttgcaaggacctggtttgctgtccgtacccaaccttccagagatcagttccatccgaagagttcctctcccacctgaacttgttgagcagtttggacatatgcagtgtaattgcatgatgggtgtgttccctcctatcagcagagcttggctcacaattgacagtgatatattcatgtggaactatgaggatggaggagaccttgcctattttgatggacttagtgagactattcttgctgtggggcttgtgaagccaaaagcaggcatctttcaacctcatgtgcgacacctcctggttttggcgacccctgtagacatagtaattcttggactcagctatgctaatttgcaaacaggttctggagttcttaatgatagtttgtctggtggaatgcagttgcttccagatcctttatattctcttcctactgataatacttaccttttaacaataacttccactgataatggcagaattttcttggctggaaaggatggctgtttatatgaagtagcctaccaggctgaagcagggtggtttagccaaagatgtaggaaaataaaccactcaaagagctcactttctttccttgttccttccttgctacaattcacgttctcagaagatgatcctattcttcaaattgcaattgataattctagaaatattttatatacacgatctgagaaaggagtaatacaggtgtatgatttgggacaagatggacaaggaatgagcagagttgcctctgtgtcacagaatgccattgtctctgctgctggtaacattgctaggaccatcgatcgttctgtttttaaaccaattgtccaaatagcagtgattgaaaattctgaatcactggactgtcagttattggctgtcacacatgcaggtgttaggttatattttagcacttgtccattcagacagccattagcacggcctaatacactgacgctggttcatgtccgcttacctcctggattctcagcatcttcaaccgtggaaaagccttcaaaagtacatagagctctttatagtaaaggtattctattgatggcagcctcagaaaatgaggataatgatattttatggtgtgtcaaccatgatacttttcctttccaaaagccaatgatggaaacccagatgacagctggtgttgatggtcattcctgggctctttctgcgatagatgaattgaaagtagataaaataattacacctttaaacaaggatcatattccaataactgattcaccagttgttgtacagcagcacatgttacctccgaagaaatttgttctcctctcagcacaggggagccttatgtttcataaacttagacctgtagatcaactgaggcatctacttgtgagtaatgtgggaggagatggagaagagattgaaagattctttaaattacatcaggaagaccaggcttgtgcaacttgccttattcttgcttgctccactgctgcctgtgatagagaagtatctgcctgggctactcgggctttctttaggtatggtggtgaagcacagatgagatttccaaccactcttccgcctccaagtaatgttggtcccatcttggggtctcctgtctattctagttctcctgttcctagtggtagtccctatccaaatccatcctttttgggaacaccgtctcatggtatacagcctcctgccatgtcaactccagtgtgtgctctgggaaacccagcaactcaggccacaaatatgagttgtgtgactggaccagagattgtgtactctggaaaacacaatggtatttgcatttacttttctcggatcatgggaaacatttgggatgcaagcttagttgtggagagaatattcaagagtggcaacagagagatcactgcaattgaaagtagtgttccctgccaactgctagagtcagtgctacaagaactaaagggtttgcaggaatttctagacagaaactcccagtttgcaggaggaccattaggaaatccaaatactactgctaaagtgcagcagaggctgataggattcatgcgtcctgaaaacggaaatccccagcaaatgcaacaggaactgcagaggaagtttcatgaggctcaactaagtgaaaagatttcacttcaggcaattcagcagttggttcgaaaatcatatcaggctctggctttatggaaacttctttgtgaacatcaattcactatcattgtggcagaacttcagaaggcaaatgagcttctccagcgttcccgacaagttcaaaataagactgaaaaagaaagaatgttaagggaatcattaaaggaatatcaaaaaattagcaatcaagtggacctttccaatgtttgtgctcagtatagacaagtgagattttatgagggtgtggtggaactttctcttacggctgcagagaaaaaagatcctcaaggtcttgggcttcatttctataaacatggagaaccagaagaagacatagttggacttcaggccttccaagaaagattaaacagttacaaatgcattacagacacacttcaagaactggtaaatcaaagtaaggccgctcctcagtctcccagtgtacccaaaaaacctggtcctccagtgttgtcatctgatccaaatatgctgagtaatgaagaagcaggacatcattttgaacaaatgcttaaattgtcacagcgatccaaggatgagctctttagtattgccctttataattggctaatacaagtcgaccttgcagataagctgctacaggttgcttctccatttctggagccacatctagtccgaatggccaaagttgatcaaaacagagttcgttatatggatttactctggcggtattacgagaagaacagaagtttcagtaatgctgctcgtgtactgtccagactggctgacatgcatagcacagaaatttcacttcagcagcgactagagtacattgctcgagccattcttagtgccaaaagttccactgccatttcatcaatagctgccgatggtgaatttcttcatgaattagaagaaaaaatggaggttgctaggatccaacttcagatacaggagacactacaaaggcagtattcccatcattcttctgtacaggatgcagtttctcagctggattctgagctgatggacataactaagctttatggggaatttgctgacccatttaaacttgcagagtgcaaacttgcaataattcattgtgccggttattcagaccctatattggtgcagacactttggcaagatatcatagagaaagaattgagtgacagtgtgacattgagctcctcggatagaatgcatgctcttagtctcaagattgttctccttggcaaaatttatgctggcacaccacgcttctttcctttagattttattgtacagtttttagaacagcaggtttgtactttgaactgggatgtgggcttcgtaatacagacaatgaatgaaattggagtaccattacctagactactagaagtttatgatcagttgttcaaatcacgggatccattctggaacagaatgaagaagccactgcaccttttggattgtatacatgtattattgataagatatgttgagaatcccagccaagttttaaattgtgaaaggagaagatttacaaatctctgcctggatgctgtttgtggttaccttgttgagctccagtctatgagctcgtcagtagcagtacaagccatcactgggaattttaaatctcttcaagctaaattagaacggcttcattaattactgtgatatactttcatccgttttatgatctgtaaaataaaaactcagctgggtccagatatcaggtgttctaaatctaagaatgtaagaacaatcttaatagaaatatgtttttaataagtggctaatatctacaaatagtacctttgctaaatgaattcttttttatgactattttgttttttagtaattgggtgaaaaaacaactgaaatgagattatttattattttaacataaggattaaaaaaatttagaaactcttaaaaaaaaa
//
ANNOTATIONS from NCBI Entrez Gene (20130726):
GeneID:9631 -> Molecular function: GO:0005215 [transporter activity] evidence: TAS
GeneID:9631 -> Molecular function: GO:0017056 [structural constituent of nuclear pore] evidence: IEA
GeneID:9631 -> Biological process: GO:0000278 [mitotic cell cycle] evidence: TAS
GeneID:9631 -> Biological process: GO:0005975 [carbohydrate metabolic process] evidence: TAS
GeneID:9631 -> Biological process: GO:0006406 [mRNA export from nucleus] evidence: IEA
GeneID:9631 -> Biological process: GO:0006606 [protein import into nucleus] evidence: IEA
GeneID:9631 -> Biological process: GO:0006998 [nuclear envelope organization] evidence: IDA
GeneID:9631 -> Biological process: GO:0007077 [mitotic nuclear envelope disassembly] evidence: TAS
GeneID:9631 -> Biological process: GO:0008645 [hexose transport] evidence: TAS
GeneID:9631 -> Biological process: GO:0010827 [regulation of glucose transport] evidence: TAS
GeneID:9631 -> Biological process: GO:0015758 [glucose transport] evidence: TAS
GeneID:9631 -> Biological process: GO:0016032 [viral process] evidence: TAS
GeneID:9631 -> Biological process: GO:0019221 [cytokine-mediated signaling pathway] evidence: TAS
GeneID:9631 -> Biological process: GO:0044281 [small molecule metabolic process] evidence: TAS
GeneID:9631 -> Biological process: GO:0055085 [transmembrane transport] evidence: TAS
GeneID:9631 -> Biological process: GO:0086014 [regulation of atrial cardiac muscle cell action potential] evidence: IEA
GeneID:9631 -> Cellular component: GO:0005635 [nuclear envelope] evidence: IDA
GeneID:9631 -> Cellular component: GO:0005635 [nuclear envelope] evidence: TAS
GeneID:9631 -> Cellular component: GO:0005643 [nuclear pore] evidence: IEA
GeneID:9631 -> Cellular component: GO:0031965 [nuclear membrane] evidence: IEA
by
@meso_cacase at
DBCLS
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