GGRNA | Results

Matches are highlighted with green background. Overlapping matches are dark colored.

Rattus norvegicus vav guanine nucleotide exchange factor 2 (Vav2), mRNA. (5164 bp)

ccttcggaccgatgacattgctgacccatccccagcccacccagtcagtggtactgctctttgcttgttgaagcccctttcctgagccaggaaacaggtcttttctgccctgctgccaggggggacacatctgtgaacctcgaagagcagggtagaaaaccaggttcccctccctgctcgctgtctcttttctctccgggaggcactcttgggtcttctgcactctaaaccatgctcactaggagtctgctggcctttgcactagatgttagtttgagcccttgtctggtatcccacaaggattcctgcaacccacacactgggcttatggccagctcaaaataagtgctcttgggggtctctgccctttcacttcttctcctggtgcttcctggcctttgacctctgcttgcttggccaaccctcttttcacccggtggagttctgagtggaagcttatgtgaagacacacacacagactcttgggccctttctcccctcatccagctgcccattcctggatgagtaggagccaaggttagggacactgtcccactgtcccactgtccccaacggagtggataatgcactacttgctcc...

position 4002

NM_001106563.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus vav guanine nucleotide exchange factor 2 (Vav2), transcript variant X5, mRNA. (4602 bp)

position 3440

XM_006233761.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus vav guanine nucleotide exchange factor 2 (Vav2), transcript variant X6, mRNA. (5153 bp)

position 3991

XM_039104733.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus vav guanine nucleotide exchange factor 2 (Vav2), transcript variant X4, mRNA. (5180 bp)

position 4018

XM_039104732.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus vav guanine nucleotide exchange factor 2 (Vav2), transcript variant X3, mRNA. (5253 bp)

position 4091

XM_017591642.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus vav guanine nucleotide exchange factor 2 (Vav2), transcript variant X2, mRNA. (5253 bp)

position 4091

XM_039104731.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus vav guanine nucleotide exchange factor 2 (Vav2), transcript variant X1, mRNA. (5269 bp)

position 4107

XM_039104730.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

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Debug Info:

0.000 | 0.000 | search_start;
0.086 | 0.086 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:GTATCCCACAAGGATTCCTGCAACC)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.106 | 0.020 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:GTATCCCACAAGGATTCCTGCAACC)?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.107 | 0.001 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

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