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2024-03-28 17:22:52, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Rattus norvegicus thioredoxin-like 1 (Txnl1), mRNA. (1301 bp)
gcagaaaggagtgagccaacccaagctctggaactgacagaagatgacattaaagaagatggcattgttcctcttcgttatgttaaatttcagaatgtgaacagtgtaactttgtttgttcagtctaatcaaggagaagaagaaacaacaagaatttcctattttactttcattggtactcccgtccaggcaacaaatatgaatgacttcaaacgagtagttggcaaaaagggggaaagccattagggtacaaaagacactggaagactactgcagtcagatttgcagctcctggataattgcttgattctcttcggaaactgttaatcttttatttgttgccagtaccaataaatcattgcttttgttcagatggtaatactagtgtttctattgtaatcttgatacatgcagttgtaaataaaagtcattactttgccaagcttaaaaaaaaaaaaaaaaaaaaaaaa
position 1120
Synonym: Txnl
NM_080887.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus thioredoxin-like 1 (Txnl1), transcript variant X1, mRNA. (4269 bp)
atgacattaaagaagatggcattgttcctcttcgttatgttaaatttcagaatgtgaacagtgtaactttgtttgttcagtctaatcaaggagaagaagaaacaacaagaatttcctattttactttcattggtactcccgtccaggcaacaaatatgaatgacttcaaacgaagaatacatattggcaagttgagagttgtcagcctgtgaaacagtagttggcaaaaagggggaaagccattagggtacaaaagacactggaagactactgcagtcagatttgcagctcctggataattgcttgattctcttcggaaactgttaatcttttatttgttgccagtaccaataaatcattgcttttgttcagatggtaatactagtgtttctattgtaatcttgatacatgcagttgtaaataaaagtcattactttgccaagcttaaatttttgtcattctgtataaatgcattctctctctttttatttgaacataggctaagcttttgttttagaagagttgttgactaaaagctagtctgtctctaaaggagcggaatgttgcaggacttgggagcactgtctatacatgtggagt...
position 1191
Synonym: Txnl
XM_006254827.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus thioredoxin-like 1 (Txnl1), transcript variant X2, misc_RNA. (5024 bp)
cctcaatctttttgtggtgtatcctccatgctgaactcgaggccagtggaaggacatacggactaaacaccaggctgggttaaaacactaatgcagaagatcaatggattctttactgagtgaaagcctttaacatctaattgtgatgtacctagactttggtctctctggggtgtaatagaaagaattaagacagaataaaagagcttatgtggggtagttggcaaaaagggggaaagccattagggtacaaaagacactggaagactactgcagtcagatttgcagctcctggataattgcttgattctcttcggaaactgttaatcttttatttgttgccagtaccaataaatcattgcttttgttcagatggtaatactagtgtttctattgtaatcttgatacatgcagttgtaaataaaagtcattactttgccaagcttaaatttttgtcattctgtataaatgcattctctctctttttatttgaacataggctaagcttttgttttagaagagttgttgactaaaagctagtctgtctctaaaggagcggaatgttgcaggacttgggagcactgtctatacatgtggagt...
position 1948
Synonym: Txnl
XR_596963.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

Data Export:

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/rn/seq%3aCTCCTGGATAATTGCTTGATTCTCT
lang : en | div : | spe : rn | query_string : seq:CTCCTGGATAATTGCTTGATTCTCT | format : html | download :

0.000 | 0.000 | search_start;
0.088 | 0.088 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:CTCCTGGATAATTGCTTGATTCTCT)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.594 | 0.506 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:CTCCTGGATAATTGCTTGATTCTCT)?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.595 | 0.000 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]