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2025-06-02 19:44:34, GGRNA : RefSeq release 229 (Mar, 2025)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Rattus norvegicus uncharacterized LOC134481213 (LOC134481213), transcript variant X3, ncRNA. (10693 bp)
tcatctctgttattctggggtcacacatcctgaaccccatctctaagaggtggcatttggcagggaaactgcctctgacctgccacccgagacacatttgtttgggtccctagagtacccccaaggggtgacctggtgacccaaagccagacttccctcagacctgcttcagccaggacccttcctctcctctgccctcagttctttccctctggctctactaggctccccactttcttccaggtatgctgtatgtaagctggtcaggaacctgctgtagttgcagaaataacccaatctcttcttgggagtggtggggagaccaaaggggacaatcctaaccagtaagatgaatataatgcaaatccagacaggaaatggccagtgtctagggcaacagaatagcttagcaagcacactttactcattcagtctcctcttccagttaaaacatgttcagagaccagatatccccttgactcccctgagcccagcacctcatctaaggaatgtgaaaagatcccctacacctcttggaggtgtaaagataagatggggtgaaggcttgcgtggtggtactccccccagggtacggggtgt...
position 8664
XR_010056610.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus uncharacterized LOC134481213 (LOC134481213), transcript variant X2, ncRNA. (10810 bp)
tcatctctgttattctggggtcacacatcctgaaccccatctctaagaggtggcatttggcagggaaactgcctctgacctgccacccgagacacatttgtttgggtccctagagtacccccaaggggtgacctggtgacccaaagccagacttccctcagacctgcttcagccaggacccttcctctcctctgccctcagttctttccctctggctctactaggctccccactttcttccaggtatgctgtatgtaagctggtcaggaacctgctgtagttgcagaaataacccaatctcttcttgggagtggtggggagaccaaaggggacaatcctaaccagtaagatgaatataatgcaaatccagacaggaaatggccagtgtctagggcaacagaatagcttagcaagcacactttactcattcagtctcctcttccagttaaaacatgttcagagaccagatatccccttgactcccctgagcccagcacctcatctaaggaatgtgaaaagatcccctacacctcttggaggtgtaaagataagatggggtgaaggcttgcgtggtggtactccccccagggtacggggtgt...
position 8664
XR_010056609.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus uncharacterized LOC108351031 (LOC108351031), transcript variant X1, ncRNA. (47706 bp)
cagcaccacagtccccaccctgttttctaatcacccctcatgacagggtgccatgtcctgcttcgcagactttcagtggagttcagagaggaacggagtgtcttgtggacctgtgtttttatttccaggaggatgcaaaggacgagacaggactgttcctcccgcctgccctctctgacttgtttggctgaccccacccaccactcggacaggaaggagcttctctaagtcagggagggatttggtctcaggctggggtcagtttcacagctacggagtgcccagattccttaccaatctcttcttgactctcatagtctcctccggtgcagttgtccctgccttctgggtaaggaacaggagccttggaaagctagtaagtgagacgcccaggctgggtgtccctgagatatggttactgatctgcctggatgcagtgtcaccccttttgctggttcccagtggctgctccagctgctcccagtgggcaattgatagatcctagtaagtcaggttgagtggcagtcagaagggagatggaccagataggaccggccctggcctgcgatgcgaagcaggcagcatgggtctgatgttccc...
position 2851
XR_001838069.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus uncharacterized LOC108351031 (LOC108351031), transcript variant X2, ncRNA. (52420 bp)
cagcaccacagtccccaccctgttttctaatcacccctcatgacagggtgccatgtcctgcttcgcagactttcagtggagttcagagaggaacggagtgtcttgtggacctgtgtttttatttccaggaggatgcaaaggacgagacaggactgttcctcccgcctgccctctctgacttgtttggctgaccccacccaccactcggacaggaaggagcttctctaagtcagggagggatttggtctcaggctggggtcagtttcacagctacggagtgcccagattccttaccaatctcttcttgactctcatagtctcctccggtgcagttgtccctgccttctgggtaaggaacaggagccttggaaagctagtaagtgagacgcccaggctgggtgtccctgagatatggttactgatctgcctggatgcagtgtcaccccttttgctggttcccagtggctgctccagctgctcccagtgggcaattgatagatcctagtaagtcaggttgagtggcagtcagaagggagatggaccagataggaccggccctggcctgcgatgcgaagcaggcagcatgggtctgatgttccc...
position 2851
XR_010066630.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : https://ggrna.dbcls.jp/rn/comp%3acaagaagagattg
lang : en | div : | spe : rn | query_string : comp:caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.078 | 0.078 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:caatctcttcttg)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.100 | 0.022 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:caatctcttcttg)?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.101 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]