GGRNA | Results

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Rattus norvegicus uncharacterized LOC134481213 (LOC134481213), transcript variant X3, ncRNA. (10693 bp)

tcatctctgttattctggggtcacacatcctgaaccccatctctaagaggtggcatttggcagggaaactgcctctgacctgccacccgagacacatttgtttgggtccctagagtacccccaaggggtgacctggtgacccaaagccagacttccctcagacctgcttcagccaggacccttcctctcctctgccctcagttctttccctctggctctactaggctccccactttcttccaggtatgctgtatgtaagctggtcaggaacctgctgtagttgcagaaataacccaatctcttcttgggagtggtggggagaccaaaggggacaatcctaaccagtaagatgaatataatgcaaatccagacaggaaatggccagtgtctagggcaacagaatagcttagcaagcacactttactcattcagtctcctcttccagttaaaacatgttcagagaccagatatccccttgactcccctgagcccagcacctcatctaaggaatgtgaaaagatcccctacacctcttggaggtgtaaagataagatggggtgaaggcttgcgtggtggtactccccccagggtacggggtgt...

position 8664

XR_010056610.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus uncharacterized LOC134481213 (LOC134481213), transcript variant X2, ncRNA. (10810 bp)

position 8664

XR_010056609.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus uncharacterized LOC108351031 (LOC108351031), transcript variant X1, ncRNA. (47706 bp)

cagcaccacagtccccaccctgttttctaatcacccctcatgacagggtgccatgtcctgcttcgcagactttcagtggagttcagagaggaacggagtgtcttgtggacctgtgtttttatttccaggaggatgcaaaggacgagacaggactgttcctcccgcctgccctctctgacttgtttggctgaccccacccaccactcggacaggaaggagcttctctaagtcagggagggatttggtctcaggctggggtcagtttcacagctacggagtgcccagattccttaccaatctcttcttgactctcatagtctcctccggtgcagttgtccctgccttctgggtaaggaacaggagccttggaaagctagtaagtgagacgcccaggctgggtgtccctgagatatggttactgatctgcctggatgcagtgtcaccccttttgctggttcccagtggctgctccagctgctcccagtgggcaattgatagatcctagtaagtcaggttgagtggcagtcagaagggagatggaccagataggaccggccctggcctgcgatgcgaagcaggcagcatgggtctgatgttccc...

position 2851

XR_001838069.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

PREDICTED: Rattus norvegicus uncharacterized LOC108351031 (LOC108351031), transcript variant X2, ncRNA. (52420 bp)

position 2851

XR_010066630.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

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Debug Info:

0.000 | 0.000 | search_start;
0.080 | 0.080 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:caatctcttcttg)?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.100 | 0.020 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:caatctcttcttg)?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.101 | 0.001 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

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