2024-05-05 00:04:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_005492564 5999 bp RNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1) (LOC289134), transcript variant X1, ncRNA. ACCESSION XR_005492564 VERSION XR_005492564.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051348.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5999 /organism="Rattus norvegicus" /mol_type="transcribed RNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="13" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..5999 /gene="LOC289134" /note="similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1); Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:289134" /db_xref="RGD:1592117" ncRNA 1..5999 /ncRNA_class="lncRNA" /gene="LOC289134" /product="similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1), transcript variant X1" /db_xref="GeneID:289134" /db_xref="RGD:1592117" ORIGIN
gggattcagatcctgagagggggtggaggggtggggtgggggggtatccatgcttcagtggatgtacgtacagccatgagcactccgtggactcgaaaatgcaccacgcaagacagtttctccttccagaggtgactgaggccaaacgagataacagacaggtgccccgggcctagtgagggaaccccgcagcagatggcagacacaagcctgagaagtcggcttctgtgtcagcgggaactgacatccacagaaccctcagtgtgtttgtgaggacctcccatgattaaacgtggctactctgctctgacaaatggctgaaggagaaatccagcaagtctgaggtggggtcattctcaggggagttagggctctctttggtgtctacagaaccctctttccttccatcgcagcgatccaactgccagaagttcaccatgtctattctcaggatctatgccagggagagatctttgactcttcagggaatctggtgtatctctacactgcaaaaggtctcttcaaagctgcagtgcccagcgttgcatccaccggcatctacgtggccctagaactccaagacaatgataagacctgcttcctggggaagggtgtctcaaaggctgttgggcacatcagtaacactatcgcacctgctctggttagcaggaaactgaatgttgtggagcaagaggagattgaccaggtgctgatcgagatggatggtacagagactaaatctaaatgtggtgcaaacaccatcctgggagtgtccctggctgtctgcagagttggtgctgtggaaaaggggtgccctttaccatcgcattgctgacttggccggcaaccctgaagtcatcccgccagtcccagctttcaatgtattcaacagtggttctcatactggcaacatgctggccacgcaacaagagttcatgatcctgcctgtgaggggcatcctgtttccgggaagccatgcacattggagcagaggtttaccacaacctgaagaatatcatcaaggagaagacgccaccaatatgggtgatgagggtggatttgcacctaacaagctagagaatgtagaagccctagagctgctcaagactgcaatggcaaaggcgcgctccactgaccaggttgtcatcggcatggatgtggctgcctccgagttctacagagctgacaagtatgacctggatttcaagtctccagatgactccagctggtacatcacacccgaccagctggctgcctgtacaagtccttcatcaaggggtgtccattgaagacccctttgaccagaacaactgggatgcttggcagaagttcacagctagtgccggcatccaggtggtgggggatgacctcacagtgaccaactctaagtggattgccaaggctacgggcaagaagtcctacaactgcctcctgctcaaaatgagccagattggctctgtgactgagtttctgcaggcgtgtaagctgacctagtccaatggctggggtatcatggtgtcccatagatctgggaagactgaggacactttcattgccgacctcgtggtggggctctgcactgggcagatcaagactggtgtccaatctgagcacctggccaagtacaatcagatccttagagttgaggaagagctgggcaggtccttcaggaacccactgaccaagtaaggcatggactggagatccctggagctaccggatcctctgtccctgatgtcatccaggtagctcaaggctggcccagtgcttacccctcccatgtcactgcttccttagatgtccaccctgaccacctggagccctgctggagactccagctttgtaatcacgtgactggtctgaatcattgtttctgtcacctgacttcccagctagtgtctggagccctcaggactccagtaatctctagggtgcccataccgtcaagactcccccaatggtttacatgcaaaaatataagccacagaagcccagaaaaaaaatttttttagagttaggaaggtaaatgaactttaccagcactgtccaccattgcagataccattgtttacagtgttatttcagtcactgagttatcctgtggttgagatgctgctcaattaatgcatagagggagggagtgccctgcagccaaatcaccttccgaaggggaaaagggcagtgtataggaaaggctcaacatgtgcaaagtcatttctcagcagtgggaaccatggtaactgtggggatgggatcacagggtgattgatggcctctggctagtgttgcagatcaagggagttcaaagggcatctgtgtcatccgtggtgcaggtctggagccaggcctggctgttagcaggcaagtttcagaaatcccatgcagtcagtccttacaagatgaaccaggctgcaactaataagattctcggctgacccaactcatacagcaggatcctgggaaaacaagaatgcccttgaaccaatggatagtggggacatacctttccaaagctgctatcttggactctctttccagtgtgttccagacagagtagattctgcttgggaagcagcaatcagaggaaaggtattgaaggagggatgtcacccccagatcaccaccttcctcttcacctctccaaggtctccacagggtcttctaggcccctttaactcatatcaggtcacgtggtttatacaactcacacctcatctctagctctttatcttaatctctgtctcttggtctctcggtagacttggtgccatctaatcttgatgaagtaacccatggaatcttcaacactgcatcccaagcctctacaaaggtggagtgtgtcttgatctcaattctactgggaggacccctcttgtgtcctttctctctccaaagacagacacccttcccccttgtccccaaatgctaaaggtgctgtcaactgcccatacagggaacacatgatagagattccacaaggactagaaaaatgtggaaggaaaaagaaattaaattcctattggtgcgaagtagaatgtgcccacacagtggagctcacctgtacaggtatctcattctctagtacctgtggtgaagagggtcccctagcccactttactatggtcttaatcatctgaggccactaatacaaaatacccgaggctggttgcttaaacaacaaaggaagttcttgtggtcctgagagttgcaaagtcccaagttcaagatacaagcaggttctattcagctaagcatttatttcatggcttctaggcagccatcttctctgtgtctttacacgacatggacagagaattctggacacttctttaacaaataaggacaccaactgggaccatggagaggccccatctttgtaacttcatctaaaccaaaggctctacctcctccagtaccatttgggcttcagcagttgagctcactgggtcatgaactcaatatcaaccactgacgtccttcactgggtcatgaactcaatagttcacacctgagactctgtgctagtggggaaagtgagccgtgtaccttcaaccccaatggcagaaccaggagggttttgtttttgtttttcgagacagagtttctctgtgtgtagccctggctgtcctagaatccagtctatagaccaggctagcctcaaactcatagggatcagcctgcctttgcctttcaagggctgggatcaaaggcatgcaccaccatgcctggcccgatcaggaccgcttatctgagcttctagtaaggagtaaagagggggtgagatccctatatggggacagttttataaggactgtccagggtcctttcaggccacaattatacataagaccagacctttccatctctcatctgctctgctggactctgaagcgctggccttctccaaaaaggaaaaattaaaaacaaattctcaagtgggttgctagtatttcagcccagcaaattttactttccgttaaaagtcaccagctgtcatgtgtttggctctgaatggaaattacttgctctcaaagaaccttttttcagttgacgccacttacgagttttattttcttctaatgaaaaatggatttgcgttagtgtctctgtaatgtcaggaagcccatggacacacgcctgcctgtcttgatgagctgccctgccctgaggaaaactaattgctctggcagccagcttggaagattgacactgtggtcaagatggggcatggagggacggagggagggagccccacagagcttctccccatcaaggaaaaaaaggtttctttcaataaacaatgcttttaagtgctaaggaggaggtcttggaaaagggagtgaatagtttaatgtgattaacgacttccaaggaggcaattcttcagagcctcggacacacatgtccacaaagcctactgctgaaggctagatccccaccagacctctgctcaaaacagtggccccactgtgcgagtaatctagggccttgtctgtggtgattaggatgctctcttcatgactctcagaaacaaaacaaaccatctggtaattctcctcctgagaggtttaaacagaaggactgagagatcaaagccagcttgacctagactcccccttcaccacaaaataaaataaaataaaccaaagcgagaacagtaagacacaacaaactgcgttaaaacagcagaaagacaaaggcaaagcaagtggcagggactgggagcaggttgctcaccagaccagccggcagccgggaggaccctggtgcccctgacaacagacactgactcctgactgagccccaaacccagagcctgcatagaaactttaaacagaactcagaagggctctcgcccccactggtctctccatacacgcaaccaaggcacacccgtgtcttaagagattttcatggaaatggtggccttcaaacccaggctgtacagaagccccaggcaggcccaggcaaaaagctctcagccccaccccacccccattcctctctccagcacgcagcaagggcttagacgtgtccaagattttgtgaataatgtttctgacagacactacagccttttcctcctcctgcgtgtggagagctcaggccgcccccagggaagactccccagccaagcagctggcttcggctctgggaacactaaattctgcctgcatttctagccaggcctggttactttagaatccctctcctccccgtcttttcgagcgggaccagccaaggtattcgtcatctttctgagctaccctgctggttgatttatgtagacgcagggcagaggccaggagtcaggagctggagtgatgggttcttccatcaccccaggggtcaccaaaagggtgaccctcgggatcaaacctccactcagctcagactgaggatagcacagcctccacagcctcggggagcagagacgagctctcgacttcgtcctggatgtaaggcatccgttaaagaagagcggctgcatgtgtctttcactggactccaccttaaaaaaaaacccttctgaaaaaaaaaaaaaaaatccagccttctccttcaggacgctggatgctgtctttttggccaaggagaaaacaagcaacagatgatgccctcgtggacacacgaggaggccaaacctgaatgttaatcatctccaaatatgtgcagctccttccagcctctctggctctccccagaagatccatgattggagcgctctcccagaggctggggactggctgcagatactcaggaactcatcagaaggtctaattgcactgacagggtaattgctgggcggtgtgtttaatacgcctgcgggtgattttgactggctaaaactggctgctgctctaagttcgactcccacttcagcactcccaaaagatcgactgatgctgtcatccaaaatggaaaaaaaaaaaaagagagagagagagagactctttttaattccattgcatattaaagtatgagctcattggaatata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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