LOCUS       XM_039107792            1780 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus heterogeneous nuclear
            ribonucleoprotein A2/B1 (Hnrnpa2b1), transcript variant X7, mRNA.
ACCESSION   XM_039107792
VERSION     XM_039107792.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1780
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1780
                     /gene="Hnrnpa2b1"
                     /gene_synonym="hnRNP; Hnrpa2; Hnrpa2b1"
                     /note="heterogeneous nuclear ribonucleoprotein A2/B1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 117 ESTs, 24 long SRA reads, 9
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 248 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:362361"
                     /db_xref="RGD:1310403"
     CDS             245..1270
                     /gene="Hnrnpa2b1"
                     /gene_synonym="hnRNP; Hnrpa2; Hnrpa2b1"
                     /codon_start=1
                     /product="heterogeneous nuclear ribonucleoproteins A2/B1
                     isoform X2"
                     /protein_id="XP_038963720.1"
                     /db_xref="GeneID:362361"
                     /db_xref="RGD:1310403"
                     /translation="

MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY"

     misc_feature    263..505
                     /gene="Hnrnpa2b1"
                     /gene_synonym="hnRNP; Hnrpa2; Hnrpa2b1"
                     /note="RNA recognition motif 1 (RRM1) found in
                     heterogeneous nuclear ribonucleoprotein A2/B1 (hnRNP
                     A2/B1) and similar proteins; Region: RRM1_hnRNPA2B1;
                     cd12762"
                     /db_xref="CDD:410155"
     misc_feature    order(272..274,278..280,284..289,353..355,359..361,
                     365..367,392..400,404..406,473..475,482..484,488..505)
                     /gene="Hnrnpa2b1"
                     /gene_synonym="hnRNP; Hnrpa2; Hnrpa2b1"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:410155"
     misc_feature    542..781
                     /gene="Hnrnpa2b1"
                     /gene_synonym="hnRNP; Hnrpa2; Hnrpa2b1"
                     /note="RNA recognition motif 2 (RRM2) found in
                     heterogeneous nuclear ribonucleoprotein A2/B1 (hnRNP
                     A2/B1) and similar proteins; Region: RRM2_hnRNPA2B1;
                     cd12581"
                     /db_xref="CDD:409995"
     misc_feature    1112..1186
                     /gene="Hnrnpa2b1"
                     /gene_synonym="hnRNP; Hnrpa2; Hnrpa2b1"
                     /note="Nuclear factor hnRNPA1; Region: HnRNPA1; pfam11627"
                     /db_xref="CDD:431967"
ORIGIN      

cgtaacggcctgacgtaagcggagacgcgttagtgggggaaggttctagaaaagcggcggtctcggctccagcggcagtagcagcggcgccggtcccgtgtgcaggtgctccgtgcggcgcagtttcttggccatcggctgctctcaccacagcgtcaggacgagtcccgtgcgtgtccgtccgcggaggtctttctcttctcgctcggctgcgggaaatcgagctgaagcgactgagtccgcgatggagagagaaaaggaacagttccgtaagctctttattggtggcttaagctttgaaaccacagaagaaagtttgagaaactactacgagcaatggggaaagctcacagactgtgtggttatgcgggatcctgcaagcaaaagatcaagaggatttggctttgtaactttctcatctatggctgaggttgatgctgccatggctgcaaggcctcattccattgatggcagggtggttgagccaaaacgtgctgtggcaagagaggagtctgggaaaccaggagcccatgtgactgtgaagaaactgttcgttggtggaattaaggaagatactgaggagcatcaccttagagattactttgaagaatatggaaaaattgatactattgaaataattactgataggcagtctggaaaaaaaagaggctttggctttgttacctttgatgaccatgatcctgtggataagattgtcttgcagaaatatcacaccataaatggtcacaatgcagaagttagaaaggcattgtctagacaagaaatgcaggaagtccaaagttctaggagtggaagaggaggaaactttggttttggagattctcgaggtggcggtggcaattttggaccaggaccaggaagcaactttagggggggttctgatggatatggaagtggacgtggatttggggatggctataatgggtatggaggaggacctggaggtggcaattttggaggtagccctggttatggaggaggaagaggaggatatggtggtggaggacctggatatggcaaccagggtgggggctacggaggtggttatgacaactatggaggaggaaattatggaagtggaaattacaatgattttggaaattataaccagcaaccttctaactacggtccaatgaagagtggaaactttggtggtagcaggaacatgggaggaccatatggtggagggaactatggtcctggaggaagtggaggaagtgggggctatggtggaaggagccgatattgagcttcttcctacttaccatgggcttcactgtataaataggagaggatgagagcccagaggtaacagaacagcttcaggttatcgaaataacaatgttaaggaaactcttatctcagtcatgcataaatatgcagtgatatggcagaagacaccagagcagatgcagagagccattttgtgaatggattggattatttaataccttactgtggaggaaggattgtaaaaaaaaatgcctttgagacagtttcttagctttttaattgttgtttctttctagtggtctttgtaagagtgtagaagcattccttctttgataatgttaaatttgtaagtttcaggtgacatgtgaaaccttttttaagatttttctcaaaaagttttgaaaagctattagccaggatcatggtgtaataagacataacgtttttcctttaaaaatttaagtgcgtgtgtagagttaagaagctgttgtacatttatgatttaataaaataattctaaaggaaa

//