2024-05-06 11:03:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039104462 500 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus RNA polymerase II subunit I (Polr2i), transcript variant X1, mRNA. ACCESSION XM_039104462 VERSION XM_039104462.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051336.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..500 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="1" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..500 /gene="Polr2i" /note="RNA polymerase II subunit I; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, 10 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 119 samples with support for all annotated introns" /db_xref="GeneID:292778" /db_xref="RGD:1309395" CDS 148..459 /gene="Polr2i" /codon_start=1 /product="DNA-directed RNA polymerase II subunit RPB9 isoform X1" /protein_id="XP_038960390.1" /db_xref="GeneID:292778" /db_xref="RGD:1309395" /translation="
MLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE"
misc_feature 148..456 /gene="Polr2i" /note="DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]; Region: RPB9; COG1594" /db_xref="CDD:224510" misc_feature 301..453 /gene="Polr2i" /note="C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II; Region: Zn-ribbon_RPB9; cd10508" /db_xref="CDD:259793" misc_feature order(301..303,307..312,316..318,370..375,379..381, 403..411) /gene="Polr2i" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:259793" misc_feature order(337..339,346..348,421..423,436..438) /gene="Polr2i" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:259793" ORIGIN
caaaggatagacgcaagccgtcagccagacatccataagataaggagccctcacgtgcacgcagctccgccccattttagtgcagctacgcgatccgacccttcccgcggtccgtagcgcggccgcgcaagcgcagaaagtaataacatgctgtaccccaaggaggacaaggagaatcgcattctgctgtacgcgtgccggaattgcgattaccagcaggaagccgacaacagctgcatctacgtcaacaaaatcacgcacgaagtggacgagctgacccagatcatcgcagacgtgtcccaggaccctacgttgccccggaccgaggaccacccgtgccagaagtgtggccacaaggaggcagtgttcttccagtcacacagtgcccgagctgaggatgccatgcgcctgtactatgtatgcaccgccccacactgcggccaccgctggactgagtgaccgttccttcctccatttgtaataaatgcccagtttccaca
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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