LOCUS       XM_039101695            2256 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus dihydropyrimidinase-like 4 (Dpysl4),
            transcript variant X1, mRNA.
ACCESSION   XM_039101695
VERSION     XM_039101695.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2256
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2256
                     /gene="Dpysl4"
                     /gene_synonym="Crmp3; Dpys4"
                     /note="dihydropyrimidinase-like 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 8
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 24 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:25417"
                     /db_xref="RGD:2409"
     CDS             16..1461
                     /gene="Dpysl4"
                     /gene_synonym="Crmp3; Dpys4"
                     /codon_start=1
                     /product="dihydropyrimidinase-related protein 4 isoform
                     X1"
                     /protein_id="XP_038957623.1"
                     /db_xref="GeneID:25417"
                     /db_xref="RGD:2409"
                     /translation="

MLMKVGGRGLDANKLIGAQRWASSHSDFLSSARVPAGTSTPAQPLPRTPSPPVDQDVLPRQEEHSPDNGVNSFLVFMAYKDRCQCTDGQIYEIFSLIRDLGAVAQVHAENGDIVEEEQKRLLEQGITGPEGHVLSHPEEVEAEAVYRAVTIAKQANCPLYITKVMSKGAADMVAQAKRRGVVVFGEPITASLGTDGSHYWSKNWAKAAAFVTSPPINPDPTTADHLTSLLSSGDLQVTGSAHCTFTTAQKAVGKDNFTLIPEGINGIEERMSVVWEKCVASGKMDENEFVAVTSTNAAKIFNFYPRKGRVAVGSDADLVIWNPRATKVISAKSHNLNVEYNIFEGVECRGMPTVVISQGRVVLEDGNLLVTPGAGRFIPRKTFPDFVYKRIKARNRLAEIHGVPRGLYDGPVHEVMLPAKPGSGTQARASCPGKISVPPVRNLHQSGFSLSGSQADDHIARRTAQKIMAPPGGRSNITSLS"

     misc_feature    <220..1140
                     /gene="Dpysl4"
                     /gene_synonym="Crmp3; Dpys4"
                     /note="Superfamily of metallo-dependent hydrolases (also
                     called amidohydrolase superfamily) is a large group of
                     proteins that show conservation in their 3-dimensional
                     fold (TIM barrel) and in details of their active site. The
                     vast majority of the members have a...; Region:
                     metallo-dependent_hydrolases; cl00281"
                     /db_xref="CDD:444807"
ORIGIN      

gggggaggggtccggatgctaatgaaggtcggtgggcggggcctggatgcaaataagctaatcggagcccagcgctgggctagctcacactcggacttcctaagctccgcgcgtgtccccgccggcacgtccacgcccgcgcagcccctaccgaggacacccagcccgcccgtggatcaggatgtccttccaaggcaagaagagcattccccggataacggtgtgaactccttcctggtcttcatggcttacaaggacaggtgccagtgtactgatggccagatatatgaaatcttcagcctcatccgggacctgggagctgtggcccaggtgcatgcagaaaacggggacatcgtggaggaggaacagaagcgcctgctggagcagggcatcactggtcctgagggccatgtgctcagccacccagaagaggtagaggccgaagctgtgtacagagctgtgaccattgccaagcaggccaactgcccactgtatatcaccaaggtgatgagcaagggtgcggctgatatggttgcccaagccaagcgcaggggggtggtcgtctttggggaacctatcactgccagcctgggcactgatggctcacactactggagcaagaactgggccaaggctgcagccttcgtcacatcaccccctatcaacccggaccctactactgcagaccacctcacctctctgctgtccagtggggacctccaggtgacaggcagtgcacactgcaccttcactactgcccagaaggctgttggcaaagataacttcacgctgatccccgagggcatcaacggtatagaagaacgcatgtctgtggtctgggagaaatgtgtggcttcagggaaaatggacgagaatgagttcgttgccgtgaccagcacaaatgctgccaaaatcttcaatttctaccccaggaaggggcgtgtggctgtgggctctgatgctgacctggtcatctggaaccccagggccacaaaagtcatctctgccaagagccataacctgaatgtagagtacaacatcttcgaaggagtggagtgcagaggcatgcccacggtggtcataagtcagggcagagtggtgctggaggacggaaacctgcttgtcactccaggggctggccgcttcattccccggaagacattcccagactttgtctataagaggataaaggctcgtaacaggctagcagagatccacggtgtgccccgaggcctgtatgatgggcctgtccacgaagtgatgttacctgccaagccagggagcggcacacaagcccgtgcatcctgtccaggcaagatctcagtgccacccgtgcgcaacctgcaccagtcagggttcagcctatctggctctcaggctgacgatcacattgccagacgcacagctcagaagatcatggcaccccccggaggacgctccaacatcacttcactttcttagacttggggtctggcaatgcaggtgctgtccccactggcagggtgtggggactactctcttcagttagctccttcctttgtagatcattattgtgaaaggtgctcagccttgccctccccctccccataaactctcttttggaagttcccagcccccagtctgaggcaccccctccagagggctgaatccagggagggttcactgccagagtgagaggattaggcagggcagtgagctggtgcctcttgccccacccctgaccttaccatgaaggccgtccacgagagctctcagcctccagcctgtgaactttccagggcctggtggtaggcagggtgggtgtttgctgctgccaccccctcagaaatcactgccctgtggaagcccccaagcttccaccagttccatgttgctaaaggtgcagcgaccccttgggggcctgtcccctctggctgccctggtgtagggaggagagcaggtgagcggagcctccgcttggcagagctgctgtgacttcagggatccaccagttactcagtgcagggtcgctccctcccacatagtcccttgcaaggaccaaacctgagctcctatagcagccgccctctagggagtttgatgatcccttagctaagacactttccttttcctacaaagtgtgttttcataggtttattagagtagctgttttggactgtgaggaaaccatagccagggatctgcatgctgctgtaccagacaccggccaccggccaagctgatttgagtcaggtcaataaaaagtctgggttcgaa

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