LOCUS       XM_039098907            5442 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger and BTB domain containing
            24 (Zbtb24), transcript variant X2, mRNA.
ACCESSION   XM_039098907
VERSION     XM_039098907.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5442
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5442
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="zinc finger and BTB domain containing 24; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 1 long SRA read, 4 Proteins, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:365590"
                     /db_xref="RGD:1306951"
     CDS             490..2622
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 24
                     isoform X1"
                     /protein_id="XP_038954835.1"
                     /db_xref="GeneID:365590"
                     /db_xref="RGD:1306951"
                     /translation="

MADTTPEPSGHLIVHSDTHSDTVLASLEDQRKKGFLCDITLIVENVHFRAHKALLAASSEYFSMMFAEEGEIGQSIYMLEGMVADTFGILLEFIYTGYLHASEKMTEQILATAQFLKVYDLVKAYTDFQNSHNSPKPPALNCSGTPVVVISNKKNDPLKRKRGRPRKTNSLQEGKSELAAEGEVQLRVNNSVQNRQNFVFKEDSVRLNEQTPKEKELEPAGEPGSVEEMPAEKDENSDPKARDGPGSQSRYSKRRTRRSVKLKDYKLSGDEDDQSTAKRATCGRQKRSSAPEARCKDCDRVFKYSHFLAIHQRRHTGERPFKCSECGKGFAQKHSLQVHTRMHTGERPYTCTVCSKALTTKHSLLEHMSLHSGQKSFTCDQCGKYFSQKRQLKSHYRVHTGHSLPECNHCHRKFMDVSQLKKHLRTHTGEKPFTCEICGKSFTAKSSLQTHIRIHRGEKPYSCSICGKCFSDSSAKRRHCVLHTGKKPFSCPECSLQFARLDNLKAHLKIHSKEKHASDSSSVSGSSADEVRNVLQLQPYQLSASGEQEIQLLVTDSVHNINFMPTPSQGVSIVAAESSQNMATDPAANITLLTQQPEQLQGLILSAQQEQTEHIQSLGMIGSQMDTSQTEPVHVITLSKETLEHLHAHQEQTSSSVPAADTGARASSPPSTRPGAELTQAPLTVPLDPSPGATVAGWPFGPSSYRSLKM"

     misc_feature    529..879
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 24 (ZBTB24); Region:
                     BTB_POZ_ZBTB24_ZNF450; cd18212"
                     /db_xref="CDD:349521"
     misc_feature    1372..>1506
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; Region: SUF4-like;
                     cd20908"
                     /db_xref="CDD:411020"
     misc_feature    1372..1434
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:411020"
     misc_feature    1372..1434
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1387..1389,1393..1395,1399..1401,1405..1410,
                     1417..1422,1429..1431,1471..1473,1477..1479,1489..1494,
                     1501..1506,1513..1515,1555..1557,1561..1563,1567..1569,
                     1573..1578,1585..1590,1597..1599)
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1387..1389,1405..1407,1426..1428,1429..1431,
                     1453..1455,1474..1476)
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:411020"
     misc_feature    <1447..1926
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1456..1518
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1540..1602
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1624..1686
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1708..1770
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1723..1725,1729..1731,1735..1737,1741..1746,
                     1753..1758,1765..1767,1807..1809,1813..1815,1825..1830,
                     1837..1842,1849..1851,1891..1893,1897..1899,1903..1905,
                     1909..1914,1921..1926)
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1792..1854
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1876..1926
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1918..1989
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:433230"
     misc_feature    1960..2022
                     /gene="Zbtb24"
                     /gene_synonym="Bif1a; ZNF450"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      

agacaaggctggatgtcggcgccatctttgtttcgccgcaccgctctctacacatgccctgtcttttcagcccacaggtatactagcatcctttagcaatttggcccagcggcgtattccatgtcctccaagtttcaagttttgggggcagcaacccatgctgagtggctccaagtattttggggacctccaagaatcatcccacattccccagagcaagttcatcgcctctgcacatcctttgaccagggattatgcttgctaatttggattctactaagtcccatgatcctaaggctgggtctaggaacccatgcacagtaccccaagccatcccaagtgggctcagtttggatcccaaagaaagaagtacctaataccagggttgtggtccacacactcaccaagacagtgtacacacagaggaggctacgatgagacaaggatgctctgtggagatttaaacctcttcggagtcttctggagaaaatggcggacacaacacctgagccttctgggcatcttattgtacactcagacactcacagtgacactgtcctggctagtcttgaggatcagaggaagaagggctttctttgcgatattactttgatcgtggagaatgtgcatttccgagctcataaagccctactggctgccagtagcgagtatttctcaatgatgtttgcggaagagggcgagattggccagtccatttatatgctggaaggcatggttgcagacacctttggtatcctgctggaatttatctatacaggttatctacatgccagtgagaaaatgacagaacaaatcctggctactgcccaattcttaaaagtctatgacctggtaaaggcttacaccgacttccagaatagccataactccccaaagccaccggccttgaactgctcaggtactccggtggtggttatttccaataagaagaatgatcctctgaaacggaaacggggaaggccaagaaaaaccaacagtttgcaggaagggaaatcggagctagctgcagagggagaggtgcagctaagagtgaacaattccgttcagaatagacaaaactttgtatttaaagaagacagtgtcagactgaatgagcagactcccaaagaaaaggagttggagcctgccggtgagccaggcagtgtggaggagatgcctgccgagaaggacgagaactctgaccccaaggctcgggatggaccgggaagccagagcaggtacagcaagcggaggactcgcaggtctgtcaagcttaaagactacaaacttagtggagatgaagatgaccagagcacagccaagagggcgacgtgtgggaggcaaaagcgttccagcgctcccgaggcccgctgtaaagactgcgacagagtctttaaatatagtcacttcttagccatccaccagagacgccacactggggagcgacccttcaaatgcagtgagtgtggaaagggctttgctcagaagcactccttgcaggttcacaccaggatgcacacgggggagcggccatacacctgcaccgtgtgcagcaaggcgctgaccaccaagcactccctgctggagcacatgagcctgcactcagggcagaagtcttttacctgtgatcagtgtggaaagtatttcagccagaaaagacagctaaagagccattatcgtgtccatacaggccactcactaccagaatgcaaccactgccatcgcaagtttatggatgtgtcccagctaaagaaacatctgcggacgcacacaggtgagaagccatttacttgtgaaatctgtgggaaatctttcacagcaaagagctccctccagacccacatcagaatccaccgaggagaaaagccgtactcctgcagcatctgcggcaaatgcttctctgactccagtgccaagaggagacactgcgtcttacatacgggcaaaaagcctttctcctgccctgagtgtagcctacagtttgctcgcctagacaatttgaaggctcacctgaaaatccacagcaaggagaagcacgcgtcagactccagcagtgtttctggcagtagtgctgacgaggtgcggaacgttcttcagctgcagccataccagctctccgcctcaggagagcaggagattcagcttctcgttaccgactctgtgcataacattaacttcatgcccactcccagccagggagttagcattgtagctgctgagagctctcagaacatggccacagacccggctgccaacatcaccctgctcacacagcagccggagcaactgcagggcctgattctttcagctcagcaggagcagacagagcacattcagagcctcggcatgattggaagccagatggacacctcccagaccgagccagtgcatgtgatcacactgtccaaggaaacgctggagcacctccatgctcaccaggagcaaacatccagctcagtgcctgcagcggacacaggagcccgagcctcctctcccccctccactaggccaggggcagagctgacacaggcacctctgactgttcccctggacccttcccctggagccacagtggcggggtggccctttgggccgtcctcttatagatccttaaagatgtgatctgccccttacttataatgggctccgtcagggcagagtctgtcttatctataacatcaactcatatttggcatttaaatattgatgagggtttccactttgatctactatctgctcttcaggattggtagttttccttcaggggcattgattttattatacttttctgtaagtgttgaatgtccacagccatagagtatggtctggtttagaaccaacagagtcgtgcctggggtgcatctttgggtatagtggggttatttctcttgggcagtatgcttgccattcccaaacgagtcagccctactgtaagtgatcacggcaagattcccctccaggaacttacccctaagagagcgcctcttggatttatctctgtgtggtacggcggggcgggctgaccgtgttgcactgaagctatcttgtcatgctcacaaaccatactcgcgacacaaaagccaaagtaactttaaaggttttgaatacaactttgcttcaaaacgtggatttatacatttttttttaaagaagcaggctattaaattttattttaaaaaatctccggggctggggatttagctcagtggtagagcgcttacctaggaagcgcaaggccctgggttcggtccccagctccgaaaaaaaagaaccaaaaaaaaaaaaaaaaaaaatctccaaagtatgaaactggatcaagatactcattccaaataaaccaaattttgtcagataatgatacttgatttttatcaaaaagaagtcttagttacctggaactttaaagtttctcagtgtaccataagtcctaaatgcactgctgacttgtacttgagcgcagcattctgagttccgcgtccatcgtccatcgtaggactcctgcaggaagaactgggctctgtctgcatggccgtccaggttaaccccactccacaccgcttccttctgagcctcagagcgaaagcagccgcctgcgtccatgatggagggactttcaagccaacactaagttatgtctgggttctgttttcacgatcactgcactagttgaattcttggacttctcaggaagctggcggccttgcttgaggaaagagatagggtgctgggaacacggtgcaggggaccgtcggtgtgaactcgtgtcttcacagccgtcattcttcttcccttcgtgtattcccagccaaatccactatatttctgcaaattaaagaactagacaattcttcacattagcaagaacatttttgttctatatgcaccgagttgttttattagacataatttataaattgaataccaagttgtagatacggatcggctgtgtaatgtgcactctgatctgactggcacaaatgctgcttccctttagtaatttagactcagtttagtcatttgagctatgtattcactgtgacgtgtgagcatggcttatatacaggccttatcccctgagccatcgctctagcctgtttattcttaaagcacaaggtatttaccgtcttttcaaaacattgaggggttggggatttagctcagtggtagagtgcttgcctaggaagcgcaaggccctgggttcggtccccagctccgaaaaaaagaaaaaaaaaaattgaattttttcctagacttctacattgtattaaagtaaaaatgtctccctgttgatagctagataattattcagaaacatgatcgaggagctgtgggtttggttttggcgtaggagactcagcccataggtacctatgctaagcgtgagctctactcctaatccgagactgtttgtttattatttctgagaacagtgttgcactgttatgtccaggctgagttaagtgtgtcctctcaagtgactgactgcagatgtggtctccaggcctacatgactggttacaagttaaatttaggttactttatcacagtctacctcagcaccaagaaataaacactgtgggcaggcctggtagtgcaggcctatgatccccggactcaggcggaggcaggagtgccttgagttgaaggctagcctgagctattagagcctgtgaaagaaaacaaggcctggggatgtagttcaacggtagaacgtgcccctgcatacacaagactgggctccatcctcagcactggggaacttataattttccaaagccacatgcaacagtaggggctattaacctaacgaagttagttacctactatcctgctcgctcttgtcagcacggccatacagcatcttacagagaagcaactgagggattgcccagagcagagcctctcaaccttcataatgctccccatgttgtggtgacccccaactataaagttaccttggttgctactttatagctgtaaatgacctgtgaaagtgtcattctaccaccccaatccccaaaggggcttcagcccacaggttgagagcctctggcctagctcctgttggtctgtagggatacatgtgaggaactgtgggcccatcccttccggtagcaccatgcctcaagcaggtggcctctaggctatattaaagagctggttaagcatgaaccagtaagtgactcagcgagcaggctatcaaaccaagtttcactgcgtcctactctcaactcccgcctggactccccacagggatggatcacaacttgaaagtaaaagcctagtaaaccctttcttccccagcttgctttggtcaaggtgtttgacacagtaatagaatgtgactagaacatttcactgccaagtctttcaacatgtaattaatgctaaactgtattaatgagagttttacatcctctcctccatacagaattctcataa

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