2024-04-29 19:31:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039098330 1921 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus zinc finger protein 431-like (LOC103690914), transcript variant X2, mRNA. ACCESSION XM_039098330 VERSION XM_039098330.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051336.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1921 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="1" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..1921 /gene="LOC103690914" /note="zinc finger protein 431-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads, 5 Proteins, and 67% coverage of the annotated genomic feature by RNAseq alignments, including 101 samples with support for all annotated introns" /db_xref="GeneID:103690914" /db_xref="RGD:9213653" CDS 132..1784 /gene="LOC103690914" /codon_start=1 /product="zinc finger protein 431-like isoform X2" /protein_id="XP_038954258.1" /db_xref="GeneID:103690914" /db_xref="RGD:9213653" /translation="
MDALTYDDVHVNFTREEWALLDPSQKSLYKDVMQETYRNLTAIGYNWEDHSIEEHCQSFRRHGRHERCHTGEKPSENTQCGKAFAQHSRLQRHKNTHTGEKLCECKPHDKAFTYDSQLQTLERIHSGEKPYKYNQCGKAFERRCNLGRHKLIHTGRKSYKCNQCGKAFSQNSHLQTHKSTHTREELYKCKQCGKAFTCHNELQSHKRIHTGEKSYECNQCGKAFKSHRYLQVHKAIHTGEKPYVCDQCGKAFARLSHLKTHGITHSGKKPCKCDQCGKAFASHSYLQVHKRIHTGEKPYVCDRCGKAFASHSYLQVHKRIHTGEKPYVCDWCGKAFASHSYLQVHKRIHTGEKPYVCDRCDKAFAYHSYLQVHKRIHTGEKLYECDQCGKAFASHSYLQVHKKIHTGEKPYVCDQCGKDFVVQSDLKRHKRTHTGEKPYKCNECGKAFVGQNDLKKHKRKHTGEKPYEYNECGKAFVGQNSLKRHERIHTGEKPYECNECGKAFVGQSNLKGHERIHGGEKPYECNECGKGFVCNDRLQTHKAIHTGVKP"
misc_feature 141..263 /gene="LOC103690914" /note="KRAB box; Region: KRAB; pfam01352" /db_xref="CDD:426216" misc_feature 348..1586 /gene="LOC103690914" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 360..413 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 456..506 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 531..590 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 612..674 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 696..758 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(711..713,717..719,723..725,729..734,741..746, 753..755,795..797,801..803,813..818,825..830,837..839, 879..881,885..887,891..893,897..902,909..914,921..923) /gene="LOC103690914" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 780..842 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 864..926 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 948..1010 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(963..965,969..971,975..977,981..986,993..998, 1005..1007,1047..1049,1053..1055,1065..1070,1077..1082, 1089..1091,1131..1133,1137..1139,1143..1145,1149..1154, 1161..1166,1173..1175) /gene="LOC103690914" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1032..1094 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1116..1178 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1200..1262 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1284..1346 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1368..1430 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1452..1514 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1467..1469,1473..1475,1479..1481,1485..1490, 1497..1502,1509..1511,1551..1553,1557..1559,1569..1574, 1581..1586,1593..1595,1635..1637,1641..1643,1647..1649, 1653..1658,1665..1670,1677..1679) /gene="LOC103690914" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1536..1598 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1572..1646 /gene="LOC103690914" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:433230" misc_feature 1620..1682 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1704..1766 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN
aggcatttcctggtgccttgctgcaggattagcctagttgccaagccttcttaaatggtcctggctgctttgccctgtgtcctgcggttggattctgtgaggcatgctcaggcaagctccaaagttgcgacatggatgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgcaggagacctacaggaacctcactgctataggttacaattgggaagaccatagtattgaagaacattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatactggagagaaaccatctgaaaatactcagtgtggtaaagcctttgcacaacatagtcgtctccaaagacataaaaacacacatactggagagaaactctgtgaatgtaagccacatgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatagtggagaaaaaccctacaaatataatcaatgtggtaaagcctttgaacgtcgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagccttttcacaaaacagtcatctccaaacacataaaagcacacatactagagaggaactctataaatgtaagcaatgcggtaaagcctttacatgccataatgaacttcaaagtcataaaaggattcatactggagagaaatcctacgaatgcaatcagtgtggtaaagcctttaaatctcataggtatctccaagtacataaagcaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagcctttgcacgactcagtcatctcaaaacgcatggaataacacatagtggaaagaagccttgtaagtgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcggtgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgattggtgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcggtgtgataaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaaaaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagtgatcttaaaagacataaaagaacacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacataaaagaaaacatactggcgagaaaccttatgaatataatgaatgtggtaaagcctttgtaggtcagaatagccttaaaaggcatgaaagaattcatactggagagaaaccttatgaatgtaatgaatgtggtaaagcctttgtaggtcagagtaaccttaaagggcatgaaagaattcatggtggagagaaaccttatgaatgtaatgaatgtggtaaaggctttgtatgtaacgatagactccaaacacataaagcaatacatactggagtgaaaccttaagaatgtaagcaatatggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatgtaatgctagtctccgaaaaca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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