2024-05-06 10:21:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039098303 2546 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus sperm motility kinase X-like (LOC103693496), transcript variant X8, mRNA. ACCESSION XM_039098303 VERSION XM_039098303.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051336.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2546 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="1" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..2546 /gene="LOC103693496" /note="sperm motility kinase X-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 71 samples with support for all annotated introns" /db_xref="GeneID:103693496" /db_xref="RGD:9090555" CDS 1089..1766 /gene="LOC103693496" /codon_start=1 /product="zinc finger protein 431-like isoform X5" /protein_id="XP_038954231.1" /db_xref="GeneID:103693496" /db_xref="RGD:9090555" /translation="
MVTVVQMYGMFQDALTYDDVHVNFTQEEWALLDPSQKSLYKDVMQETYRNLTAIGYNWEDHTIEEHCQSFRRHGRHERCHTGEKPSENTQCGKAFAQHSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCTLGRHKLIHTGRKSYKCNQCGKAFARHSHLKTHGITHTGEKPYECDQCGKAFAYHSYLQVHKRIHTGVKP"
misc_feature 1131..1253 /gene="LOC103693496" /note="KRAB box; Region: KRAB; pfam01352" /db_xref="CDD:426216" misc_feature <1314..1751 /gene="LOC103693496" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 1353..1496 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1518..1580 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1518..1520,1527..1529,1566..1568,1578..1580) /gene="LOC103693496" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(1533..1535,1539..1541,1545..1547,1551..1556, 1563..1568,1575..1577,1617..1619,1623..1625,1635..1640, 1647..1652,1659..1661,1701..1703,1707..1709,1713..1715, 1719..1724,1731..1736,1743..1745) /gene="LOC103693496" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1602..1664 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1686..1748 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN
gtagccctggctgtcctgaaagtagctgtttagaacgtggggcctcagatgtaaatggtccacctgcctctggctccagagtgccaggattaaatgtgggccaacatgccccgctttctctttgtttgtttgtttgtttgtttgtttgttcatttttatgttattggctgatggttggactatgggttttggcacatgtcaagcatatgctgctgtgttgatcttcatccatgttatgaattttgaaatttgacagagagcatgttctgtttctcaggatggcatgtattcatgacattcatacatatcattcatgacattcatatgcacatcatgtatgcctaatccccatagtagtcagaaaatggcttcagaattacggaacttggagtaatcaatagttgtgaagctcccttctaactactggcaattgaggccaattatttttaagaccagcaagagctcttcactgctgagccagctcctgtcctatgttgcttatttaggatcaacatttacattgccagtattttcagctatctgtttgtatctgtttcaacattcatccccttttagtaagatctcattactgttacagttaaaactgggacacctcaagattatggaagaagaatacagaagtgcagtgaatgtaattctttgtaggaactctagtaaaaacctctgagtcctttctatctttcttgtttgtttgtttgattgatttttcataggggagacagggtcttaatatgtacctctggctgtcctggatagacctcagatatacctgcctctgcctcctgagtgcttgaattaaagacatgagcctatatgctcacttgatatttttttgcagttagtaattgttcatacaatttctctgtgtgctcaatactgcgcccccctccattaattagcatttctcttgcaaggctatatcctacccaaagagcaaagatatgacagaggtgaaccttattactcagttttcttctaagatgatttcgtaattacattagaacatctgggtcaagaaataagtgggttaagcacaagaagcatacatttacagtgatatcggtatcatggttactgttgtacaaatgtatgggatgtttcaggatgcattgacctatgatgatgtacatgtgaacttcactcaagaagaatgggctttgctggatccttcacagaagagtctttacaaagatgtgatgcaggagacctataggaacctcactgctataggttacaattgggaagaccatactattgaagaacattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatactggagagaagccctctgaaaatactcagtgtggtaaagcctttgcacaacatagtcatctccaaagacataagagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtactcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagcctttgcacgacacagtcatctcaaaacgcatggaataacacatactggagagaaaccttacgaatgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagtgaaaccttaagaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagcctttgtatgtaatgctagtctccgaaaacataaagcaacacatactagagtgaaaccttatgattgtaagcaatttagtaagttctttgcctctcatgatcaactttgacaacatgaaagaattcatactggagagcaaccttaaaatgtagtcaatgtggtaaagccttttcacaatcaagccacctccaactacataaaagaacacatacgtactaaagagtaaccgtatgaatgtaaccaatgcagtaaagcctttactgtgatcttcaaaggtatggtggtttaaatatacttggcccatggcaagtggcagtgttaggaggtatggcctttttggagtagatgtggcctttgaggatgtatgtcactgtgggggagggtgggctttgagtccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctcctccagcaccgtgtctgcttggacactgacattccttccaccttgataatagactgaacctctgaatctgtataccgcccctccccccaattaaatgtcctttctaagagttgccttggtcatggtatcttttcacagcattaaaacccaaattaacacaaacagcataaaagataccacattagagagaaactatgaatgtactaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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