2024-05-06 12:59:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039098299 4050 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus sperm motility kinase X-like (LOC103693496), transcript variant X6, mRNA. ACCESSION XM_039098299 VERSION XM_039098299.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051336.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4050 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="1" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..4050 /gene="LOC103693496" /note="sperm motility kinase X-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:103693496" /db_xref="RGD:9090555" CDS 2189..3913 /gene="LOC103693496" /codon_start=1 /product="zinc finger protein 431-like isoform X3" /protein_id="XP_038954227.1" /db_xref="GeneID:103693496" /db_xref="RGD:9090555" /translation="
MQETYRNLTAIGYNWEDHTIEEHCQSFRRHGRHERCHTGEKPSENTQCGKAFAQHSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCTLGRHKLIHTGRKSYKCNQCGKAFARHSHLKTHGITHTGEKPYECDQCGKAFAYHSYLQVHKRIHTGEKPYECNQCGKAFVGQNDLKRHERIHTGEKPYKCNECDKGFGHHRNFRMHKMMHAGEKPYKCNQCGKAFSQNSHLQTHKSTHTGEKPYKCDQCGKAFTSHSYLQVHKRIHTGEKLCECEQCGKAFASHSYLKVHKRIHTGENLYECNQCGKTFASHSYLQVHKRIHTGEKLYECDQCGKAFASHSYLQVHKRIHTGEKLYECDQCGKAFASHSPLQVHKRIHTGEKPYVCDQCGKDFVVQSDLKRHKRTHTGEKPYKCNECGKAFVGQNDLKKHKRKHTGEKPYKCNECGKAFVWNGSLRTHKVIHSGEKPYKCNECGKAFACNTSLRTHKAIHTGVKPFKCKHCGKAFVGQNDLKRHERIHTGEKLYKCNECGKAFVFDSSLRKYKAVHTGVKP"
misc_feature <2285..2791 /gene="LOC103693496" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 2324..2467 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2489..2551 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2489..2491,2498..2500,2537..2539,2549..2551) /gene="LOC103693496" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 2561..3868 /gene="LOC103693496" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 2573..2635 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2573..2575,2582..2584,2621..2623,2633..2635) /gene="LOC103693496" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(2588..2590,2594..2596,2600..2602,2606..2611, 2618..2623,2630..2632,2672..2674,2678..2680,2690..2695, 2702..2707,2714..2716,2756..2758,2762..2764,2768..2770, 2774..2779,2786..2791,2798..2800) /gene="LOC103693496" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 2657..2719 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2741..2803 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2825..2887 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2825..2827,2834..2836,2873..2875,2885..2887) /gene="LOC103693496" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 2909..2971 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2909..2911,2918..2920,2957..2959,2969..2971) /gene="LOC103693496" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(2924..2926,2930..2932,2936..2938,2942..2947, 2954..2959,2966..2968,3008..3010,3014..3016,3026..3031, 3038..3043,3050..3052,3092..3094,3098..3100,3104..3106, 3110..3115,3122..3127,3134..3136) /gene="LOC103693496" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 2993..3055 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3077..3139 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3161..3223 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(3161..3163,3170..3172,3209..3211,3221..3223) /gene="LOC103693496" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(3176..3178,3182..3184,3188..3190,3194..3199, 3206..3211,3218..3220,3260..3262,3266..3268,3278..3283, 3290..3295,3302..3304,3344..3346,3350..3352,3356..3358, 3362..3367,3374..3379,3386..3388) /gene="LOC103693496" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 3245..3307 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3329..3391 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3413..3475 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(3413..3415,3422..3424,3461..3463,3473..3475) /gene="LOC103693496" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(3428..3430,3434..3436,3440..3442,3446..3451, 3458..3463,3470..3472,3512..3514,3518..3520,3530..3535, 3542..3547,3554..3556,3596..3598,3602..3604,3608..3610, 3614..3619,3626..3631,3638..3640) /gene="LOC103693496" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 3497..3559 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3581..3643 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3665..3727 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3749..3811 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3833..3895 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN
ggccttgggctatgggcctaacaggaaaaaaaaacaatggatcaatggacaatattggagacaaacatttgagtgtaagcagccctctactgcccaactgaggaagaatcttggaaacagaaagccagaagaaccagtgggctctgcccagccaccattggtccatttttgctccgacatcacaaagaagcatcgtaggacatcatagatacctgttcacttacagatctgcctgagactgtctcctgtacctacagtactgaagttggcatttgtttgaaaaactactagagtccgatgctgctggaagattctactggaacttccaggagcttttaaacattgacatagtgcatttatctccactttggtcatcattgaactattgatggtcaattccagaagaaatcccaccatccacaaaatcatgatgtgcctcatgattagtgaaatgaggcatgtttattacctccttcctgtgtatttctgctttgaagttttgaagaggaccagaagccagagagtaggaatgtacaggctctttcaacaattttatggtaaatataatccccgtatcagcatctgactgaaacattctaagaccccaagtatatcaatgtgtccaatcctggtttcaaatggtggaggtaaatttaatatttaggggaatgcaccgttcccttgttttagaattagaacctctacaacgggaatctgggacatgtatattagtaggacgggagcaattataagtcaaacaacacagtgtattaggtgataaaattcttaagaacaggagaaaggggccaggcaagaaagctagagggtggcccattgagagctggtggaacaacgagatcaggtgataaatagcattcagtcacacaactaaacaaatgaggaagctttcttgggacaaaaaggccagtgcaaaaagcagcgcaagctttgtgcctgtgatacagaaaggcaagcacatacacctcttgcacactcacacctgtatacaccttattgattctgtgagactggtgtccagccagctctaagatctgtctgtctccctcatactccacgatactgaggttacagacacatgggcaccacgccttatttgcaggtgggttctgggcatttgaactcaggtcctcatgcttgcacaaaagtcatttcaccactgagccatctcttctgtccctctaatttgttgaccttagacaaaagcgtggcagcttaaaacaaaggttttgcataacacatttttacactagcaggctgtcaagatttttccagccttttgattatctaataggtagagaaaatgaagctgaccaagtctcctaagtggtaacgtagtataataataataataataataataataataataataataataataataatataataagggtgctgcttactgccttgttcactgtggcctgcttagcctgcttttctatagcgcaagggacccccagcccagcgatggccccacaatggtctgggccctcccacatcaatggctgatgaagaaaatgccttacaggtttgcctgcagcccagtcttacagaacattgttaaattgtggttctctcctctgagatgactccagtttgtgtcaaattgacataaaactagccagaacatgaatgttgaccaaaaaaaaattctgaagaataaactgatggtggaaatctgatttcttaacttccaatcataagtactaaatttttcatttttaattccgtattctttggacctaagcctgggagtctttcaagaagggatttataatatcttttagtagcttagtgttacactgagccacataaaattaatgtttttgagagttagaggcagcttaatatgcataatgtaaggtttatcctatcaccaaagtacaggtgacctggtctacattgaacaattgttgtacatggaaggctctgtgtaagacttaagatggtgttggaatattataaagacagaatcaggcatgaggagttcatggcgatgagagtgagtgacaagccactcgggtctcctgtctgagagttgagctgcttcctcacagatccgcgtacagaggatgcattgacctatgatgatgtacatgtgaacttcactcaagaagaatgggctttgctggatccttcacagaagagtctttacaaagatgtgatgcaggagacctataggaacctcactgctataggttacaattgggaagaccatactattgaagaacattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatactggagagaagccctctgaaaatactcagtgtggtaaagcctttgcacaacatagtcatctccaaagacataagagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtactcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagcctttgcacgacacagtcatctcaaaacgcatggaataacacatactggagagaaaccttacgaatgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgaatgtaatcaatgtggtaaagcctttgtaggtcagaatgatcttaaaaggcatgaaagaattcatactggagagaaaccctacaaatgtaatgaatgtgataaaggctttggacatcaccgaaattttcgaatgcataaaatgatgcatgctggagaaaaaccctacaaatgcaatcaatgtggtaaagccttttcacaaaacagtcatctccaaacacataaaagcacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgagcaatgtggtaaagcctttgcatctcatagttatctcaaagtacataaaagaatacatactggagagaatctctatgaatgtaatcaatgtggtaaaacctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagttcataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagtcctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagtgatcttaaaagacataaaagaacacatactggtgagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacataaaagaaaacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatggaatggtagtctccgaacacataaagtaatacatagtggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcaaatgtaagcactgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaactttacaaatgtaatgaatgtggtaaagcctttgtatttgattctagtctccgaaaatataaagcagtacatactggagtgaaaccttaagaatgtaagcaatgtggtaaagcctttgtatgtcagaattaccttaaaaagcatgaaagaattcatactggagagaaactttacaaatgtaatgaatgtggtaaagcctttgtatttgattctagtctccgaaaaca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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