2024-04-29 06:21:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039094100 4765 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus Rho guanine nucleotide exchange factor 7 (Arhgef7), transcript variant X6, mRNA. ACCESSION XM_039094100 VERSION XM_039094100.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051351.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4765 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="16" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..4765 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Rho guanine nucleotide exchange factor 7; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 59 ESTs, 1 long SRA read, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:114559" /db_xref="RGD:620624" CDS 596..2713 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /codon_start=1 /product="rho guanine nucleotide exchange factor 7 isoform X6" /protein_id="XP_038950028.1" /db_xref="GeneID:114559" /db_xref="RGD:620624" /translation="
MTDNANSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKPSEKPVSPKSGTLKSPPKGFDTTAINKSYYNVVLQNILETEHEYSKELQSVLSTYLWPLQTSEKLSSANTSYLMGNLEEISSFQQVLVQSLEECTKSPEAQQRVGGCFLSLMPQMRTLYLAYCANHPSAVSVLTEHSEDLGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHPDRQDIQKSMTAFKNLSAQCQEVRKRKELELQILTEPIRSWEGDDIKTLGSVTYMSQVTIQCAGSEEKNERYLLLFPNLLLMLSASPRMSGFIYQGKLPTTGMTITKLEDSENHRNAFEISGSMIERILVSCNNQQDLHEWVEHLQRQTKVTSVSNPTIKPHSVPSHTLPSHPLTPSSKHADSKPVALTPAYHTLPHPSHHGTPHTTISWGPLEPPKTPKPWSLSCLRPAPPLRPSAALCYKEDLSRSPKTMKKLLPKRKPERKPSDEEFAVTKSTAALEEDAQILKVIEAYCTSAKTRQTLNSTWQGTDLMHNHVLADDDQSSLDSLGRRSSLSRLEPSDLSEDSEYDSLWTAHSYRMGSASRSRKESAPQVLLPEEEKIIVEETKSNGQTVIEEKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMNDPAWDETNL"
misc_feature 623..784 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Src Homology 3 domain of beta-Pak Interactive eXchange factor; Region: SH3_betaPIX; cd12061" /db_xref="CDD:212994" misc_feature order(638..640,644..646,653..655,662..667,710..712, 716..724,755..757,761..763,767..772) /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212994" misc_feature 875..1408 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160" /db_xref="CDD:238091" misc_feature order(893..895,905..907,1187..1189,1259..1264,1271..1276, 1280..1285,1292..1297,1304..1309,1316..1318,1394..1396, 1406..1408) /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="GTPase interaction site [polypeptide binding]; other site" /db_xref="CDD:238091" misc_feature 1499..1795 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Cloned out of library/PAK-interactive exchange factor pleckstrin homology (PH) domain; Region: PH_Cool_Pix; cd01225" /db_xref="CDD:269932" misc_feature 1970..2245 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Unstructured region two on RhoGEF 6 and 7; Region: RhoGEF67_u2; pfam16614" /db_xref="CDD:435464" misc_feature 2453..2707 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="betaPIX coiled coil; Region: betaPIX_CC; pfam16523" /db_xref="CDD:435396" ORIGIN
gtggagcggggcttctcatcccgggacaagaagccactcgacgtctcctcgcggccggcgtgtggaccccacaccttgtgctggctccacgagaaccctgtggttctcgagctcctgtgcaggtggcacgttggtagtccccgttgctcggggacatctgtccactcctgaaaaccgccctttgggattccccagtatcatattcaggtcggacccagccctcagcaggtggtcaggcaaggtccaagctgaaatgtcgagggccaaccccctcttggtcctcatatgctgcttctgcaggcccgaaattcggcggtgtggctggatcctccacccataatgcttacgttagaaaactcacgagcctgaaaacgggacttttgatgcaaatgatttgtatcaggggcagaactttaacaaggtcctcagctccttggtgacactaaataaagtgacagcagacattggactaggaagtgattctgtgtgtgcccggccctcgtcacataggataaagtcttttgattccctgggatcccagtcttcacacagtaggacttcaaaattgctgcagagccagtaccgaagcttggacatgactgataacgccaacagccaactggtagtacgagccaagtttaacttccagcagaccaatgaagatgagctctccttctcgaagggtgacgtcatccatgtcactcgagtggaggaaggaggctggtgggaaggcacacacaatggcaggaccggctggttccccagcaactacgtacgagagatcaagccaagtgagaagcctgtgtcacccaaatcagggaccttgaagagccctcccaaagggttcgatacgactgccatcaacaagagctattacaatgtggtgctacagaacatcctggaaacagagcatgagtattccaaggagctgcagtctgtgctgtcaacctacctgtggccgctgcagaccagcgagaagttgagttcagcaaacacttcatatttaatgggaaatctagaggaaatatcttccttccagcaagtgcttgtacagtccctagaagaatgcacaaagtctcctgaagcccagcagagagtcggtggctgcttcctgagcctgatgccgcagatgaggaccctgtaccttgcctactgtgccaaccacccatctgctgtgagcgtcctcacagagcacagtgaggacctgggagagttcatggagacaaaaggtgccagcagccctgggatcctggtgctgactaccggcctgagcaagcccttcatgcgcctggacaagtaccccacactgctgaaggagctggagagacacatggaggattatcatcctgatagacaagatattcagaaatctatgactgccttcaaaaacctttcagcccagtgtcaagaagtacgaaaaaggaaagagctggagctgcagatcctgacagagcccatcaggagctgggagggggatgacataaagacgttgggcagtgttacatacatgtcccaagtcacaattcagtgtgcaggaagcgaggagaagaatgagaggtacctcctgctcttcccaaaccttctgctcatgttgtctgccagtcccaggatgagcggtttcatctatcagggaaagctgccaacaacaggaatgacaatcacaaaactcgaggacagtgagaaccataggaatgcatttgagatatcagggagcatgatcgagcgcatcctggtgtcctgcaacaaccaacaggacttgcacgaatgggtggagcatctgcagaggcagacgaaggtcacgtctgtgagcaaccccaccatcaagccccactcggtgccatcgcacacacttccttcccatcctctcactccatccagcaaacacgcggacagcaagcctgtggcactgacgcctgcgtaccacacactcccccacccctctcaccatggcaccccacataccaccatcagctggggacccctggagcctccgaagacccccaagccttggagcctgagttgcctgcggcctgcccctcccctccggccctcagctgctctctgctacaaggaggatctcagcaggagtcccaagaccatgaaaaagctgctgccaaaacgcaagcccgagcgcaagccttcagacgaggagttcgctgtgaccaagagcacagccgctctggaggaagacgctcagatcctgaaggttattgaagcttactgcacaagtgcaaagacgaggcagaccctgaactcaacatggcaaggcactgacctgatgcataatcacgtcttggctgatgacgaccaatcaagtctagactccttgggtcgtcgcagtagcctttctcgtttggagccctcagacctctcggaagactctgagtatgacagtctatggacagcccatagttacagaatgggttctgcatcccgttcacgcaaagagtctgctccacaagtgttgcttccagaagaagagaaaattatagtcgaagaaaccaaaagcaacgggcagacagtgatagaggaaaagagcctcgtggataccgtgtacgcactaaaggatgaagtccaagagttacgacaggataacaagaagatgaagaaatccttagaggaggaacagagggcccgcaaggacctagagaagctggtgaggaaggttctaaagaacatgaacgaccctgcttgggatgagaccaatctataggctgacttcattctcataggctgaagaccagcagctcctggacaaggctggggcccttggtccccagcacagtgacattcaggactaaggaggtggtcttcaaaaggcaagcagcagtgatgagctgttgctgaagtagctacatgtgagttctagacaccgaggcctgggctgagtgagcacctcgctgtacacctctccctgcagtgactgaccagagtcctcggctttgggacttgagttgaatctataaatagcttacctgtgtactccttgtaaatactgagatctgaatgaacatgtacctgagaggtgactaggctaaccctcttgctaggatttccttctcagcctttctggccacagggatctgaagttgtgttcctaaagtgttggaagcagagaggtgaagggatgcccgggcagcatctgactcgtgtgcagtgtaggctccttggtgccatcaggagcaggcactcaggcacagtggatttgtgtgtctcttttaactgcagtattccagtcccgagctacggcagtacccagggcaccatgggttctaggagggtgagactggtgcccgcctctgctgcgctgtcctgcctgggccctgggtcacagtgtggagtagtgggctagcctggtgtatcttggccctgtacatagttgtgttatttattccatattctttagccggtgctgccgggcagggtttggctgcaggccgttttcatccacaacctctgctctgcctttggctgcagccagcgttgtccaggccactgagagccctcttaaccctgagcaagactaaagcaatacacaccgcactggagcagcgcggagagcctcagtgctgtgcccccgccctcccttgctgcctccccaggcccagatgggccctggaaggctggtggcttccaagaggccctgcttctgttgggccaggcttgcccttgatttggcaacagtgacagtgacctcaggagcttagctgtccccttcctttctccaaagaggttgttttgaagtcagagatacttccccatagaaaggtgtttgtctttaaacactgaggagcagtgtggctggggcctcagcatagcctaggttgtgacccagctcctggccgctcgtcctccgtgcaggtttctgagtgggtgtgtggaggccctttgtgctctccttcctccacactctggctgggtgcagcgtctgtcaggatccaccagagcctcccgctcctgttagcattttaccagcccagtctgtgccgggtgagaaaagctgaggtgttctttctctttggtaagccctgcttcccaagcactctccgacccaaaagacactacagcagaggacagtgtgttcgctgtcacagtggacctcacctcaggaacaacgctccttgcaactccactgctggcgactggtgcctggggttgctggacagctcctccgccaagagcaagcgaagaccatctctgacgcggtcctcaccccgccgaggtggctgtgcaggccccaaggacagtttttacagacctgccttaatgattcgcttggagacttccatgagtatccctaccctggacagggtggtagcgttgtgtcagcacgccaccctgtccttctgagatccagtgtcttccaggctctcagggagcgagaatctgcacccggagcagtcctttttaaagctggcacacaccccgttctcctcctgcatctctgcggtggagctctgacacccacagcacagggtgcctctcaccaactccaactcctccgcgctctgtgagggatgagggggattaagccatttcctgtcctctagtgaagcactttccgttctgaaccatgctgctgcgtgcagcctctgaagctccactcttccctcccagttgttgcccacgctccctgtgcacctcatgccaacccctccttccctgcgacactgcaggagccggtgctggcagaccgcaccggtgtgactgctgcagtgtgtgtgctgccccctccaattattaaactccttattttcctatctca
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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