2024-05-06 11:18:11, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039093840 1001 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus mast cell protease 8 (Mcpt8), transcript variant X1, mRNA. ACCESSION XM_039093840 VERSION XM_039093840.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051350.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1001 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="15" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..1001 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /note="mast cell protease 8; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns" /db_xref="GeneID:29269" /db_xref="RGD:3067" CDS 103..912 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /codon_start=1 /product="mast cell protease 8 isoform X1" /protein_id="XP_038949768.1" /db_xref="GeneID:29269" /db_xref="RGD:3067" /translation="
MFLFLFFLVAILPVNTEGGEIIWGTESKPHSRPYMAFIKFYDSNSEPHHCGGFLVAKDIVMTAAHCNGRNIKVTLGAHNIKKQENTQVISVVKAKPHENYDRDSHFNDIMLLKLERKAQLNGVVKTIALPRSQDWVKPGQVCTVAGWGRLANCTSSNTLQEVNLEVQKGQKCQDMSEDYNDSIQLCVGNPSEGKATGKENGRAKSSWPEGRTQPSRDTLGDSGGPFVCDGVAQGIVSYRLCTGTLPRVFTRISSFIPWIQKTMKVLQQS"
misc_feature 163..888 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /note="Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad...; Region: Tryp_SPc; cd00190" /db_xref="CDD:238113" misc_feature 163..165 /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /note="cleavage site [active]" /db_xref="CDD:238113" misc_feature order(295..297,424..426,766..768) /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /note="active site" /db_xref="CDD:238113" misc_feature order(685..687,811..813,817..819) /gene="Mcpt8" /gene_synonym="RMCP-10; rMCP-8; rMCP-VIII; RMCP8" /note="substrate binding sites [chemical binding]; other site" /db_xref="CDD:238113" ORIGIN
ataagagatctctggctctgcgcctctttcctcacctgatgttttaaaagttgtgagaagtaacgaagtgaccagttgagacctggtcagaccctgaagaggatgttcctgttcctgttcttcctggtggccatcctaccagtcaacactgaaggaggagagatcatatggggtacagagtccaaaccccactcccggccctacatggcattcataaagttttatgatagtaattcagaaccccatcactgtggcggtttcctggtggcaaaagacatcgtaatgacagcagctcactgtaatggaagaaatataaaagtaaccttaggtgctcacaatatcaagaaacaagaaaacacccaggttatctctgttgtaaaagccaaacctcacgagaactatgacagagattcacattttaatgacatcatgctcctgaagttggaacgcaaagctcaactcaatggtgttgtgaagactattgcccttcctaggagccaggactgggtgaaacctgggcaggtgtgcacagtggcaggttggggacgcttggccaattgtacttcgtctaacacacttcaagaagtgaatctagaagttcagaaaggccagaagtgccaagacatgtccgaagactacaacgactccatccagctttgtgtgggaaaccccagcgaggggaaggctactggtaaggaaaatggaagagctaagtctagttggcctgaaggaaggacacagccaagcagagacacactaggagactcagggggtccctttgtgtgcgatggagtggcccagggcattgtcagttatcgcttgtgtactgggacacttcctcgagtattcaccagaatctccagctttataccgtggattcagaaaacaatgaaagtccttcaacaatcctagaacacaaaacctgtgtctgggccaatgtccagcatcctggggtatggctatctgagtcttaataaagaaatctgtctgcaggaaagaga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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