2024-05-03 07:14:26, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039091616 3917 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus calcium/calmodulin-dependent protein kinase II beta (Camk2b), transcript variant X12, mRNA. ACCESSION XM_039091616 VERSION XM_039091616.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051349.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3917 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="14" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..3917 /gene="Camk2b" /gene_synonym="Ck2b" /note="calcium/calmodulin-dependent protein kinase II beta; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns" /db_xref="GeneID:24245" /db_xref="RGD:2262" CDS 252..1757 /gene="Camk2b" /gene_synonym="Ck2b" /codon_start=1 /product="calcium/calmodulin-dependent protein kinase type II subunit beta isoform X12" /protein_id="XP_038947544.1" /db_xref="GeneID:24245" /db_xref="RGD:2262" /translation="
MATTVTCTRFTDEYQLYEDIGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDHQKLEREARICRLLKHSNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKEAYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITAHEALKHPWVCQRSTVASMMHRQETVECLKKFNARRKLKGAILTTMLATRNFSVGRQTTAPATMSTAASGTTMGLVEQAKSLLNKKADGVKPQTNSTKNSSAITSPKGSLPPAALESSDSTNTTIEDEDAKARKQEIIKTTEQLIEAVNNGDFEAYAFYFENLLAKNSKPIHTTILNPHVHVIGEDAACIAYIRLTQYIDGQGRPRTSQSEETRVWHRRDGKWQNVHFHCSGAPVAPLQ"
misc_feature 285..1160 /gene="Camk2b" /gene_synonym="Ck2b" /note="Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II; Region: STKc_CaMKII; cd14086" /db_xref="CDD:270988" misc_feature order(309..323,333..335,372..374,378..380,471..473, 519..530,540..542,546..548,654..659,663..665,669..674, 678..680,717..722,729..731,774..788,792..794) /gene="Camk2b" /gene_synonym="Ck2b" /note="active site" /db_xref="CDD:270988" misc_feature order(309..320,333..335,372..374,378..380,471..473, 519..530,540..542,669..674,678..680,717..722) /gene="Camk2b" /gene_synonym="Ck2b" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270988" misc_feature order(321..323,540..542,546..548,654..659,663..665, 669..671,729..731,774..788,792..794) /gene="Camk2b" /gene_synonym="Ck2b" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270988" misc_feature order(717..749,756..788) /gene="Camk2b" /gene_synonym="Ck2b" /note="activation loop (A-loop); other site" /db_xref="CDD:270988" misc_feature order(1131..1133,1137..1160) /gene="Camk2b" /gene_synonym="Ck2b" /note="CaM binding site [polypeptide binding]; other site" /db_xref="CDD:270988" misc_feature 1434..1739 /gene="Camk2b" /gene_synonym="Ck2b" /note="Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of...; Region: NTF2_like; cl09109" /db_xref="CDD:447678" ORIGIN
gggcgcggcggcgacagcggcgcccgcgcctctgcgcgcgtaggtgtgcggcgcgctcctggcggggacagagcgagcagatctcgcgtgcgctcgccgcccggcgcagcccagcccggcccccgcccggcgccgcgagccgaggtgtctcccgcgcccgcgcccgtgtcgccgccgtgcccgcgagcgggagccggagtcgccgccgcccgagcgcagccgagcgcacgccgagcccaatcgccaccgccatggccaccacggtgacctgcacccgtttcacggacgagtaccagctatacgaggatattggcaagggggctttctctgtggtccgacgctgtgtcaagctctgcaccggccatgagtatgcagctaagatcattaacaccaagaagctgtcagctagagatcaccagaagctggagagggaggctcggatctgccgcctgctgaagcattccaacattgtacgcctccatgacagcatctctgaagagggcttccactacctggtcttcgacctggtcactggtggggagctctttgaagacattgtggcgagagagtactacagtgaggctgacgccagtcactgtatccagcagatcctggaggctgttctccattgtcaccaaatgggggtcgtccacagagacctcaagcctgaaaacctgctcctggccagcaaatgcaaaggggccgcagtgaaactggcagacttcggcctggccatcgaggttcagggagaccagcaggcatggtttggatttgcgggaacaccaggctacctgtctcccgaagttcttcggaaggaggcctatggcaaaccagtggatatctgggcatgtggggtgatcctgtatatcctgctggtgggatacccacctttctgggatgaggaccagcacaagctgtaccagcagatcaaggctggggcctatgacttcccatcccccgagtgggacaccgttacccctgaagccaaaaacctcatcaaccagatgttgaccatcaaccccgccaagcgcatcacggcccacgaggccctgaagcacccatgggtctgccaacgatccacggtggcctccatgatgcacagacaggagactgtggaatgtctgaagaagttcaatgcaaggaggaagctcaagggagccatcctcaccactatgctggccacacggaatttctcagtgggcagacagaccaccgctccggccacaatgtccaccgcggcctccggcaccaccatggggctggtggaacaagccaagagtttactcaacaagaaagcagacggagtcaagccccagacaaacagcaccaaaaacagctcggccatcaccagccccaaaggatccctccctcctgccgccctggaatcttccgacagcaccaacacaaccatagaggacgaagatgccaaagcccggaagcaggaaatcatcaagaccacagagcagctcatcgaggccgtcaacaacggcgactttgaggcctatgcattctactttgagaacctgctggccaagaacagcaagccgatccacaccactatcctgaacccgcacgtgcacgtcatcggcgaggatgcagcctgcatcgcttacatccgcctcacacagtacatcgacggccagggcagaccccgcaccagccagtccgaagagacccgtgtgtggcaccgccgcgacggcaagtggcagaatgtccatttccactgctcgggcgctccagtggccccactgcagtgagagctgcgcctggtttcaccggacagagttggtgtttggagcccagccgccctcgggcgcacggcctgcctgtcgcatgtttgtgtctgcctcgtcccctcccctggtgcctgtgtctgcagaaaaacaagaccagatgtgatttgtttttttaaaaaaaaaaaaaaagtaagatgatgacaacgacaaccacatgcaaacaaacaaacaaaaaatattggcatcggatgaaatggaaaacaaacaaacaaacctaaagaaaggaaaaagctgtaaaaatctggcatttgtggggccgcccccccacccaagctccacatgtgtctgttgcgctcctggctttggggaccctcagggcgtgaatgtgcccatgccgactgtgttagtctgtaggtaccgcactcaccccacaccttgggcgtctgcatcctcctcccatgcatgggccccacgtgctaacctggctgttgtggcgtcaggtgtcttgggaagggctgggggctgcctcctttcctgctagttgtgcctgaaagctgctgctgttcctgcttcccctacccgtccctcatcccgagaaggactgggagggtgctcctctagccaaggacctacctttgccccatggagtgtgtaggagaagctcgtcctcaagatcatcagaaagtaacctggttctttggggagtgaggtatggaggtatgtatctcgcctccaagcctctcgcctggcagggattggttaggaaggcaggctggctgcagcacccacccatctagctacgaagagaggactgggcagggatggactccttcctgtttggggttcttgtcccttccctgccaccagcagctgagcgagagtggcccacccctggcccgggcagttcctctctgaagttggcaacagaccctcacgaagacggagttgccgagatactggacagagctgggagcagacgctggctgcatctagggggtttgtccactgagcttgaagtctgggtgctcgagacttggttaaatgttgcagaatgtgataaagaggggccagaagtcgggttttagactgctgggcaatgcaggtccatgtgagggtttgatggtaggagtgctttcctaacctgagcctagagaagaaataagccagaggatgtgcctcctcagaggcacatggaaggccaaaattggttaggtagggctgtattgtgtgaggcctttccaggtaggccagagatacgtagtagagagaaggcaggctgggggcagagatatatgggtgtggggcctggataccagtgggtggagggagggtccattaggacagtgtgccacccccagggcccagtggtgctcctaggtgccggctgcctggactcgtgggtggcccttggtgacagagggaatcatcaaggctggacatgttacaaagtcaggctagggagataggtataaagccgggttgggtgggggtggtcaggggctttgatcgcagaggtccgtgggcctccaccccaatgctgcccactttaaattcacgtcattttcaaccaggattttctttatcttttactacaaatcaagccaagggaggggcacgaagtggggaacgggacacaggatcctaaactccaaggggactgtccacctacagacactcagtggataccacctttgatccacactgtgcccaggacagctgccccctacccatggacacagggtaaacatctgccaggctccatgagtggcccaaggccatggaatagaggcagggcttgtcacagacagcgtgaggccctgtggcctgccaccctgacatcctggggtctcctttcctctcccacccaccttgttatctccacaaagctgcctgtctgggataatttggggattttttttctgggggacaattcttttgcatgaccctctaaagagcaggacacgtctgctctactggctaggtgttcgcaggtggtggcgtcgactgtggccagtgctggagcgtgtcactgcctgcagtactggtgaccctcctctcttctctttttgctgagttccattgtcttttctttccgagccttgtaggtgtacaaaacttattcttattttgttctgtctcgggaaactgcaaataaaaaaaaaaaaaaaaaaaaagaacgaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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