2024-05-05 00:49:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039086900 6041 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus myosin heavy chain 2 (Myh2), transcript variant X1, mRNA. ACCESSION XM_039086900 VERSION XM_039086900.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051345.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6041 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="10" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..6041 /gene="Myh2" /gene_synonym="Myh1; Myh2a; MyHC-2A; MyHC-IIA" /note="myosin heavy chain 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 33 ESTs, 117 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns" /db_xref="GeneID:691644" /db_xref="RGD:620354" CDS 86..5914 /gene="Myh2" /gene_synonym="Myh1; Myh2a; MyHC-2A; MyHC-IIA" /codon_start=1 /product="myosin-2 isoform X1" /protein_id="XP_038942828.1" /db_xref="GeneID:691644" /db_xref="RGD:620354" /translation="
MSSDSEMAVFGEAAPYLRKSEKERIEAQNRPFDAKTSVFVAEPKESFVKGTIQSKDAGKVTVKTEAGATLTVKEDQIFPMNPPKYDKIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVAAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAVTGEKKKEEVTSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQITSNKKPELIEMLLITTNPYDYPFVSQGEISVASIDDQEELMATDSAIDILGFTNDEKVSIYKLTGAVMHYGNMKFKQKQREEQAEPDGTEVADKAAYLQGLNSADLLKALCYPRVKVGNEYVTKGQTVEQVTNAVGALAKAMYEKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYEQHLGKSANFQKPKVVKGKAEAHFSLIHYAGTVDYNITGWLDKNKDPLNETVVGLYQKSSMKTLAYLFSGAQTAEAEASSGGAAKKGAKKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRILYADFKQRYKVLNASAIPEGQYIDSKKASEKLLGSIDIDHTQYKFGHTKVFFKAGLLGLLEEMRDDKLAQLITRTQAMCRGFLARVEYQKMVERRESIFCIQYNIRAFMNVKHWPWMKLFFKIKPLLKSAETEKEMATMKEEFQKTKDELAKSEAKRKELEEKMVSLLKEKNDLQLQVQAEAEGLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKIKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESIMDIENEKQQLDERLKKKEFEMSNLQSKIEDEQAIGIQLQKKIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDLASNVETVSKAKGNLEKMCRTLEDQVSELKSKEEEQQRLINDLTTQRGRLQTESGEFSRQLDEKEALVSQLSRGKQAFTQQIEELKRQLEEEVKAKNALAHALQSSRHDCDLLREQYEEEQESKAELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQAAEEHVEAVNAKCASLEKTKQRLQNEVEDLMLDVERTNAACAALDKKQRNFDKILAEWKQKYEETHAELEASQKEARSLGTELFKMKNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKRIHELEKIKKQVEQEKCELQAALEEAEASLEHEEGKILRIQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVESMQSTLDAEIRSRNDAIRIKKKMEGDLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQLHLDDALRGQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETDISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDLQLRLDEAEQLALKGGKKQIQKLEARVRELEGEVESEQKRNVEAVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEEQSNTNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE"
misc_feature 182..316 /gene="Myh2" /gene_synonym="Myh1; Myh2a; MyHC-2A; MyHC-IIA" /note="Myosin N-terminal SH3-like domain; Region: Myosin_N; pfam02736" /db_xref="CDD:426949" misc_feature 383..2404 /gene="Myh2" /gene_synonym="Myh1; Myh2a; MyHC-2A; MyHC-IIA" /note="Myosin and Kinesin motor domain; Region: Motor_domain; cl22853" /db_xref="CDD:451428" misc_feature order(464..469,620..643,791..796,1475..1492) /gene="Myh2" /gene_synonym="Myh1; Myh2a; MyHC-2A; MyHC-IIA" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:276814" misc_feature 2642..5875 /gene="Myh2" /gene_synonym="Myh1; Myh2a; MyHC-2A; MyHC-IIA" /note="Myosin tail; Region: Myosin_tail_1; pfam01576" /db_xref="CDD:426331" ORIGIN
agctcccctgcttttcacatctgaccctcttacttcccagctgcaccttctcatttgccaataagggtctgtgagttcagcagccatgagttccgactctgagatggccgttttcggggaggctgctccttacctccggaagtctgaaaaggagcgaatcgaggcccagaataggccttttgatgccaaaacatctgtctttgtggcggagcccaaggagtcctttgtcaaaggaaccattcagagcaaagacgcagggaaagtgactgtgaaaactgaagcaggagcgaccctgacggtgaaagaagaccagatcttccccatgaaccctcccaagtacgacaagatcgaggacatggccatgatgacccacctccacgagcccgctgtgctgtacaacctcaaagagcgttacgcagcctggatgatctacacctactcgggcctcttctgtgtcactgtcaacccctacaagtggctgccagtgtacaaccctgaggtggtggctgcctaccgtggcaaaaagcgacaggaggccccgccccacatcttctccatctctgacaatgcctaccagttcatgctaactgaccgggagaatcagtcaatcctgatcaccggagaatccggggccgggaagactgtgaacacgaagcgtgtcatccagtactttgcaacaattgcagtcactggggagaaaaagaaggaggaggtgacttctggcaaaatgcaggggaccctggaagatcaaatcatcagtgccaaccctctgctggaggcctttgggaatgccaagaccgtgaggaatgacaactcctctcgctttggtaaattcatcaggattcactttggcaccacggggaaactggcatccgctgacatcgagacatatctgctagagaagtcccgggtcactttccagcttaaggcggaaaggagctaccatatattttatcaaatcacatccaacaagaagccagagctgatcgaaatgctgctgatcaccacaaacccatacgattacccattcgtcagtcaaggggagatcagtgtggccagcattgatgaccaggaagaactgatggccacggatagtgctattgacattctgggctttacaaatgatgaaaaggtctccatctataagctcacgggagctgtgatgcattatgggaacatgaagttcaagcagaagcagcgggaagaacaggctgagccggatggcacggaagtggctgacaaggctgcctatcttcagggtctgaactctgctgacctgctcaaagccctttgttaccccagggtcaaggtcggcaatgagtacgtcaccaaaggccagactgtggagcaggtgaccaacgctgtgggtgccctggccaaggccatgtacgagaagatgttcctgtggatggtcacccgcatcaaccagcagctggacaccaagcagcccaggcagtacttcatcggggtcttggacatcgctggctttgagatctttgatttcaacagcctggagcagctgtgcatcaacttcaccaacgagaaactgcaacagtttttcaaccaccacatgttcgtgctggagcaggaggagtacaagaaggaaggcatcgagtggaccttcatcgacttcgggatggacctggcggcctgcatcgagctcatcgagaagccgatgggcatcttctccatcctggaagaggagtgcatgttccccaaggcgacagacacctccttcaagaacaagctgtatgaacagcatcttggaaagtccgccaacttccagaagcctaaggtggtcaaaggcaaagccgaggcccacttctccctcatccactatgcgggcaccgtggattacaacatcactggctggctggacaagaacaaggaccccctgaatgagaccgtggtggggctgtaccagaagtcttcaatgaaaactcttgcttacctcttctctggagctcaaactgctgaagcagaggcaagtagtggtggagctgccaagaaaggtgctaagaagaaagggtcctccttccagacagtgtctgccctgttcagagagaacttgaacaagctgatgaccaacctcaggagcacccaccctcattttgtgaggtgtatcatccccaatgaaaccaagacacctggtgccatggagcacgaactggtcctgcaccagctgaggtgtaacggggtgctagaaggcatccgcatctgcaggaaggggttccccagcaggatcctctacgcagacttcaagcagagatacaaggtgttaaatgcaagtgccatccctgagggtcagtacatagatagcaagaaggcttctgagaagctccttggctccatcgacattgaccacactcagtataagtttggtcacaccaaggtctttttcaaagctggtcttctggggctcctagaggagatgagagatgacaagttggcccagctgattacccggacgcaggccatgtgcagagggttcttggcaagagtggagtaccagaagatggtggagcgaagagagtccatcttctgcatccagtacaacatccgcgccttcatgaacgtcaagcactggccctggatgaaactcttcttcaagatcaaaccactgctgaagagcgctgagaccgagaaggagatggccaccatgaaggaggagttccagaaaaccaaggatgaacttgccaaatcggaggcaaagaggaaggaacttgaagaaaagatggtgtccctgttgaaagaaaaaaatgacttgcaactccaagttcaggctgaagctgaaggcttggctgatgctgaggaaagatgcgaccagctgatcaaaaccaaaatccagctggaggccaaaatcaaagaggtgactgagagagctgaggatgaggaagagatcaacgccgagctcacggccaagaagaggaagctggaggacgagtgctcagagctgaagaaagacatcgatgaccttgagctgacactggccaaggttgagaaggagaagcacgccacggagaacaaggtgaaaaacctcacagaggagatggcgggcctggacgaaaccatcgccaagctgaccaaggagaagaaggccctgcaggaggcccaccagcagaccctggatgacctgcaggcagaggaggacaaagtcaacaccctgaccaaagccaaaatcaagctggaacagcaagtggatgatcttgaagggtccttggagcaagaaaagaagcttcgcatggacctagaaagagccaagagaaaacttgagggtgacttgaagttagcccaggagtccatcatggacattgaaaatgagaaacagcagcttgatgaaaggctcaaaaagaaagagtttgaaatgagcaacctgcagagcaagatcgaggatgagcaggccatcggcattcaactgcagaagaagatcaaggagttgcaggctcgcattgaggagctggaggaggaaatcgaggcagagcgggcctccagggccaaagcagagaagcagcgctctgacctctcccgggaactggaggagatcagcgagcggctggaagaagccggcggggccacttcagcccagatcgagatgaacaagaagagagaggccgagttccagaaaatgcgcagggacctggaggaggccaccctgcagcacgaagccacagcagccaccctgaggaagaagcacgcggacagcgtggctgagctcggggagcagattgacaacctgcagcgggtgaagcagaagctggagaaggagaagagcgagatgaagatggagatcgacgacctcgctagtaatgtagagacagtgtctaaggccaagggaaacctagagaagatgtgccgcaccctggaggaccaggtgagtgagctgaagtcgaaggaggaggaacaacagcgcctgatcaacgacctgaccacccagagaggacgcctgcagaccgaatccggtgaattttcccggcagcttgatgagaaggaagcgctggtttctcagttatcaaggggcaagcaagcatttacccaacagattgaggagctgaagaggcagctggaagaggaagtaaaggccaagaacgcgctagcccacgccctgcagtcctcccgccatgactgtgacctgcttcgggaacagtacgaggaggagcaggaatctaaggccgagctgcagagggcgctgtccaaggccaacagtgaggtggcccagtggaggaccaaatatgagacggatgccatccagcgcacggaggagctggaggaggccaagaaaaagctggctcagcgtctgcaggcggctgaggagcacgtagaagccgtgaacgccaagtgtgcttccctggagaagactaagcagcggttgcagaacgaggtggaggacctcatgctggacgtagagaggaccaacgctgcctgtgctgccctggacaagaagcagagaaacttcgacaagatcctggcagagtggaagcagaagtatgaggaaacacatgctgagctggaggcatcccagaaggaagcccgctccctgggtactgagctcttcaagatgaagaacgcctacgaggagtccctggatcagctggaaaccctgaagcgagagaataagaacttacagcaggagatttctgacctcacggaacagattgcagaaggaggaaagcgcatccacgaactggagaaaataaagaaacaagtcgaacaagagaagtgtgaacttcaggctgctctagaagaagcagaggcatctctggagcacgaggagggaaagatcctgcgcatccagctggagctgaaccaagtcaagtctgagatcgacaggaagattgctgagaaggatgaggagatcgaccagctgaagagaaaccacattcgagtcgtggagtccatgcaaagcacgctggacgccgagatcaggagcaggaacgacgccatcaggatcaagaagaagatggagggagatctcaatgagatggaaatccagctgaaccacgccaaccgcatggctgctgaggccctgagaaactacaggaacacccaaggcatcctcaaggacacccagctgcacctggatgacgctctccggggccaggaggacctgaaggagcagctggccatggtggagcgcagagccaacctgctgcaggctgagatcgaggagctgcgggccactctggagcagactgagaggagcaggaagattgcagagcaggaactgctggacgccagtgagcgcgtgcagctcctccacacccagaacaccagcctcatcaacaccaagaagaagctggagacagacatttcccagatccagggagagatggaggacatcgtccaggaagcccgcaatgcagaagagaaggccaagaaagccatcactgacgccgccatgatggcggaggagctgaagaaggagcaggacaccagcgcccatctggagcggatgaagaagaacatggagcagacggtgaaggacctgcaactgcgtctggacgaggctgagcagctggcgctgaagggcggcaagaagcagatccagaaactggaggccagagtgcgtgaactggagggtgaggtagagagtgagcagaagcggaatgttgaggctgtcaaagggcttcgaaaacacgagaggcgagtgaaggagcttacttaccagacagaagaagaccgaaaaaatatcctcaggcttcaagatttggtggataaactccaagcaaaagtaaaatcttacaagagacaagctgaggaggctgaggaacaatccaacacaaatctatccaagttccgcaagctgcagcatgagctggaggaagccgaggagcgggctgacatcgccgagtcccaggtcaacaagctgcgggtgaagagccgcgaggttcacactaaagtcataagtgaagagtaaggcagctctgatgctgtagaatgaccgaagagaggcacaaaatgtgaagcctttggtcatgtccccatgtgattctatttaatcctattgtaaggaaataaagagcccaagttctttgcaagcaata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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