LOCUS       XM_039085360            1172 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus N-acetylglucosamine-1-phosphate
            transferase subunit gamma (Gnptg), transcript variant X2, mRNA.
ACCESSION   XM_039085360
VERSION     XM_039085360.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1172
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1172
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /note="N-acetylglucosamine-1-phosphate transferase subunit
                     gamma; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 ESTs, and 93% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     113 samples with support for all annotated introns"
                     /db_xref="GeneID:287134"
                     /db_xref="RGD:1311614"
     CDS             303..899
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /codon_start=1
                     /product="N-acetylglucosamine-1-phosphotransferase subunit
                     gamma isoform X2"
                     /protein_id="XP_038941288.1"
                     /db_xref="GeneID:287134"
                     /db_xref="RGD:1311614"
                     /translation="

MWMTDGDSCHSRSRQSKVELTCGKTNRLAHVSEPSTCVYALTFETPLVCHPHSLLVYPTLSEALQQRWDQVEQDLADELITPQGYEKLLRALFEDAGYLKVPGETHPTQLAGDSKGLGLETLDICRKAHAELSREVQRLTSLLEQHGIPHTQPTGQSACPGKLPATLGPAALGQICINLCCSGRNHPLSAPGSAAPGR"

     misc_feature    <315..464
                     /gene="Gnptg"
                     /gene_synonym="Gnptag"
                     /note="Glucosidase II beta subunit-like protein; Region:
                     PRKCSH; cl06793"
                     /db_xref="CDD:414904"
ORIGIN      

cctgggagcgatggcggggcggctgactggcttcctgatgttgctggggctcgcggcgcaggggcctgcgccgacacatgccgggaagatgaaggtggtggaggagcccaacactttcggggcccccgcatctcttcagactcgctggcaagtgcttcagcctagtggagtccacgtacaagtatgaattctgccctttccacaacgtgacccagcatgagcagaccttccgttggaacgcctacagcgggatccttggcatctggcatgagtgggagatcgtcaacaacaccttcaagggcatgtggatgactgatggggactcctgtcactcccggagccggcagagcaaggtggagctcacctgtggaaagaccaaccgactggcccacgtgtctgaaccaagcacctgcgtctatgcattgacatttgagacccctcttgtctgccatccccactctctgttagtgtatccaaccctgtcagaggccctgcagcagcgctgggaccaggtggaacaggacctggcggacgagctgatcacaccgcagggctatgagaagttgctgagggcactttttgaggatgctggctacttaaaggtcccaggagaaacccaccccacccagctggcaggagattccaagggcctggggcttgagactctggacatttgcagaaaggcacacgcagagctgtcacgggaggtacaaagactgacaagtctgctcgaacagcatggaatcccacacactcagcccacaggtcagtctgcctgccctggtaagctgccagccacacttgggcctgcagctctggggcagatctgtatcaatctctgttgttctggcagaaaccacccactctcagctcctgggtcagcagctcccggtaggtgaaatctcagagcagttgcggggcgacccaggactacgagggaacatcctgtgagccaggcggccatgaagaacagaaatgttctgagccttgagtgtcttttcagagagaggccaagtgtggtctcagcagagtgcaccaaactggtgtggtgtggacatggcttcttttggcatcttctaggccagacaatatcactgacaagagggacctgctggccagcctttgttgtgcccaaagatccagacaaaataaagattcgaagttttaattaa

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