2024-05-04 22:51:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039084220 438 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus crystallin, gamma F (Crygf), transcript variant X2, mRNA. ACCESSION XM_039084220 VERSION XM_039084220.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051344.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..438 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="9" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..438 /gene="Crygf" /gene_synonym="Cryg6; Len" /note="crystallin, gamma F; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 68% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:689947" /db_xref="RGD:1586353" CDS 1..345 /gene="Crygf" /gene_synonym="Cryg6; Len" /codon_start=1 /product="gamma-crystallin F isoform X2" /protein_id="XP_038940148.1" /db_xref="GeneID:689947" /db_xref="RGD:1586353" /translation="
MGKITFYEDRGFQGRHYECSTDHSNLQPYFSRCNSVRVDSGCWMLYEQPNFTGCQYFLRRGEYPDYQQWMGFSDSVRSCHLIPHNQDLRARGLQRPDGGDHRRLPPPAGPLPLQ"
misc_feature 7..246 /gene="Crygf" /gene_synonym="Cryg6; Len" /note="Beta/gamma crystallins; Region: XTALbg; smart00247" /db_xref="CDD:214583" ORIGIN
atgggaaagatcaccttctatgaggaccgaggcttccagggccgccactatgagtgcagcacagaccactccaacctgcagccctacttcagccgctgcaactctgtgcgcgtggacagtggctgctggatgctctatgagcagcccaacttcacaggctgccagtatttccttcgtcgcggggagtaccctgactaccagcagtggatgggtttcagcgactctgtccgctcctgccacctcatcccccacaatcaggatctacgagcgagaggactacagaggccagatggtggagatcacagacgactgcccccacctgcaggaccgcttccacttcagtgacttccactccttccacgtgatagagggctactgggtcctctacgagatgcccaactaccgggggcggcagtacctgctgaggcccagggaata
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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