LOCUS       XM_039080547            3433 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus splicing factor 1 (Sf1), transcript
            variant X7, mRNA.
ACCESSION   XM_039080547
VERSION     XM_039080547.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3433
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3433
                     /gene="Sf1"
                     /gene_synonym="Zfp162"
                     /note="splicing factor 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 66 ESTs, 3 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 204 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:117855"
                     /db_xref="RGD:620645"
     CDS             455..2236
                     /gene="Sf1"
                     /gene_synonym="Zfp162"
                     /codon_start=1
                     /product="splicing factor 1 isoform X7"
                     /protein_id="XP_038936475.1"
                     /db_xref="GeneID:117855"
                     /db_xref="RGD:620645"
                     /translation="

MEPRHNGTEDSDSRHAYGYPPWPDSGTRKSLYRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNRILRPWQSSETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAPRPAAPASNPPPPSLMSTTQSRPPWMNSGPSENRPYHGMHGGGPGGPGGGPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQAAAAASPGTPQMQGNPTMVPLPPGVQPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPPMDPSNFVTMMGMGVAGMPPFGMPPAPPPPPPQN"

     misc_feature    <521..1087
                     /gene="Sf1"
                     /gene_synonym="Zfp162"
                     /note="Splicing factor (branch point binding protein) [RNA
                     processing and modification]; Region: MSL5; COG5176"
                     /db_xref="CDD:227503"
     misc_feature    719..997
                     /gene="Sf1"
                     /gene_synonym="Zfp162"
                     /note="type I K homology (KH) RNA-binding domain found in
                     splicing factor 1 (SF1) and similar proteins; Region:
                     KH-I_SF1; cd22382"
                     /db_xref="CDD:411810"
     misc_feature    order(764..769,773..781,785..799,806..808,839..853,
                     860..868,875..877)
                     /gene="Sf1"
                     /gene_synonym="Zfp162"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:411810"
     misc_feature    1148..1195
                     /gene="Sf1"
                     /gene_synonym="Zfp162"
                     /note="zinc finger; Region: ZnF_C2HC; smart00343"
                     /db_xref="CDD:197667"
ORIGIN      

tcagtccgcgcagtaacaagaagtgcgcgctgcgacacctcccagttcactcggccccgccgccatttcgtcgcctggcctaacggttcggccaatcccgacgcgtattgaaaagaactagtgctccgccaatcggaggccgctgactccgacctcacctcgggccggcccaatccaggccgcggccccgccgcccccaacccgcccccgcggcgtcctctctcctccctctttgtgcgtctggcgccgccgccgcccgccgcgtgagaggacgggctccccgcgctcttcgggagcgtagtcgggtcccctccccccaacccgcgaaggttcgtgaaggagaagccgccgcggaggacgaggaaccgctggtgccggtcccctggggcgccatggcgaccggagcgaacgccacgccgctggacttcccaagtaagaagaggaagaggagccgatggaaccaagacacaatggaacagaagacagtgattccaggcatgcctacggttatcccccctggcctgactcgggaacaagaaagagcttatataggtccccttcccctgagccaatctacaacagcgaggggaagcggcttaatactcgagaattccgtacccgaaaaaagcttgaagaggagcggcataccctcattacggagatggttgctctcaacccagactttaaaccacctgcagattacaagcctccagcaacacgtgtgagcgataaagtaatgatcccccaagacgagtatccagaaatcaattttgtggggctcctaattgggcccagagggaacaccctgaagaacattgagaaggaatgcaacgccaagatcatgatacggggaaagggatcagtaaaagaagggaaagttgggcgtaaagatggtcagatgttgccaggagaagatgaacctcttcatgctctagtcactgccaatacaatggagaatgtcaaaaaggcagtggaacagatcagaaacatcctgaagcagggtattgaaaccccagaggaccagaatgacctaaggaaaatgcagcttcgagagttagctcgcttgaatggcactctacgggaagatgataacaggatcttgagaccctggcagagctcagagacacgaagcattaccaacacgactgtgtgtactaagtgtggaggggctggtcacattgcctctgattgcaaatttcagaggcctggtgaccctcaatcagctcaggataaagcacggatggataaagagtatttgtcccttatggctgagctaggggaagctcctgtccctgcatctgtgggctccacctctggacctgccaccacacccctggccagtgcaccaaggcctgctgctcctgccagcaacccaccaccaccgtctctcatgtctacaactcagagtcgcccaccctggatgaattctggtccttcagagaatcggccctaccatggcatgcatggaggtggtcctggtgggcctggaggtggcccccacagtttcccacacccattacccagcctgacaggtgggcatggtggacatcccatgcagcacaacccaaatggaccaccaccaccttggatgcagccaccaccaccaccgatgaaccagggcccccacccacctgggcaccatggccctcctccaatggatcagtacctgggaagtacgcctgtgggctctggggtctatcgcctgcatcaaggaaaaggtatgatgccgccgccgcctatgggcatgatgccgccgcctccgccacctcccagtgggcagcccccgcctcctccctctggtcctcttcctccatggcagcagcagcagcagcagcctccaccaccccctccgcccagcagcagtatggcttccagcacccccttgccatggcagcaaaatacgacgactaccaccacgagcgctggcacagggtccatcccgccatggcaacagcagcaggcggctgccgcagcttctccaggaacccctcagatgcaaggcaaccccactatggtgcccctgccccccggggtccagccgcctctgccgcccggggcccctccccctccgccgcctccgccacctggttccgccggcatgatgtatgccccaccccctcctcctccgcctcccatggacccttctaactttgtcaccatgatgggcatgggggtggcgggcatgccgcccttcgggatgcctccagctcccccaccgcctccaccacagaactagacttgttttttttttaagaaaatatatattatatacatagagagttggtctcgtttaaacacacgccgaacctcaccatatggagccagacattgggatgcacgcatgtgattgtgtgtgcacgcatgtgtgtgtgtgcacgcactgggctgggccaagtgactggactcgcttgggaaacgggcaagtggtagtaggggcgccagcttgggctctcctggcgccctgtagcatcgagtgtcttctttgtcttctctcctcacccaactccctttgcctctccccaaaccgggccgccaggatccctccccgcagcagcgatggcccgagccatgagagtgaggactttccgcgcccattggtgacccttccaggcagacagcctcaacagcgcccctggtggacaggatggttcggcaaagcagcctgagttatttttgtggacggaatcggaacacgctggctccatatcgtgaaatttttattaatttttatctttttcctttgttatttccttatcttttcctttcttcagactccgtccaaggagatgctctccccgatcttctgctgcagataggatccttccccttgtctccattcctttcctcccataggggagaggggcaaatggtttaggcacaggctttggctagtaatgtcaggcgtggtggtggcggcggggtcctattgttctaatttgttgaagggcctcaaccacactcaaagaagggtggtttatcttcgacatcttaaagagtcttgataatcctgacattgctaaataggggtaatccggcagtgggattcattcatatcttcctgcactcctgccagcagtacatggcacagcccaagccaccctaggccagcctggagtcttttccatgctctgatcacctaagctgcctcagaactcatttgcttctctccttcctggaaagcttccctttatgttttattttgaccccagatgtccagatgttttgcagtgtctggggcttgtgccccttgttgttcgttctgcttctttgcccctttcctctacatggagtgattatgttgacaataatgtgtaatgcgcgttcttttcactggtttatctacagaaatttctctgggccttttttctgtgtttgattcaacactgcactaagcggggaatgttccaattaataaaagagcagtgtggttttc

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