2024-05-02 20:32:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039079848 14921 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus plectin (Plec), transcript variant X20, mRNA. ACCESSION XM_039079848 VERSION XM_039079848.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051342.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..14921 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="7" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..14921 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="plectin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 62 ESTs, 42 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:64204" /db_xref="RGD:621649" CDS 167..13756 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /codon_start=1 /product="plectin isoform X18" /protein_id="XP_038935776.1" /db_xref="GeneID:64204" /db_xref="RGD:621649" /translation="
MKIVPDERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPRERDVIRSVRLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVPGAQDGVRANELQLRWQEYRELVLLLLQWIRHHTAAFEERKFPSSFEEIEILWCQFLKFKETELPAKEADKNRSKGIYQSLEGAVQAGQLKIPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLECLQRIVSKLQMEAGLCEEQLNQADSLLQSDIRLLASGKAAQRAGEVERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHERLVAIRTEYNLRLKAGVGAPVTQVTLQSTQRRPELEDSTLRYLHDLLAWVEENQRRIDGAEWGVDLPSVEAQLGSHRGMHQSIEEFRAKIERARNDESQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHGFVAAATKELMWLNEKEEEEVGFDWSDRNTNMAAKKESYSALMRELEMKEKKIKEIQNTGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENTAYFQFFSDVREAEEQLQKLQETLRRKYSCDRSITVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAIVQLKPRNPAHPVRGHVPLLAVCDYKQVEVTVHKGDQCQLVGPAQPFHWKVLGGSSSEAAVPSVCFLVPPPNQEAQEAVARLEAQHQALVTLWHQLHVDMKSLLAWQSLNRDIQLIRSWSLVTFRTLKPEEQRQALRNLELHYQAFLRDSQDAGGFGPEDRLVAEREYGSCSRHYQQLLQSLEQGEQEESRCQRCISELKDIRLQLEACETRTVHRLRLPLDKDPARECAQRIAEQQKAQAEVEGLGKGVARLSAEAEKVLALPEPSPAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRSTQGAEEVLKTHEEHLKEAQAVPATLQELEVTKASLKKLRAQAEAQQPVFNTLRDELRGAQEVGERLQQRHGERDVEVERWRERVTQLLERWQAVLAQTDVRQRELEQLGRQLRYYRESADPLSSWLQDAKSRQEQIQAVPIANSQAAREQLRQEKALLEEIERHGEKVEECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTRYSELTTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAELEARELQRRMQEEVTRREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQVEAAERSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREKQRALQALDELKLQAEEAERRLRQAEAERARQVQVALETAQRSAEVELQSKRASFAEKTAQLERTLQEEHVTVTQLREEAERRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQKSLAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAERVLTEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKASFEKAAAGKAELELELGRIRSNAEDTMRSKELAEQEAARQRQLAAEEEQRRREAEERVQRSLAAEEEAARQRKVALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQQTLQQEQNMLERLRSEAEAARRAAEEAEEAREQAEREAAQSRKQVEEAERLKQSAEEQAQAQAQAQAAAEKLRKEAEQEAARRAQAEQAALKQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEETDHQKSILDEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQRTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVTLVQTLEIQRQQSDQDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQQEQILQETQALQKSFLSEKDSLLQRERFIEQEKAKLEQLFQDEVAKAKQLQEEQQRQQQQMEQEKQELVASMEEARRRQREAEEGVRRKQEELQRLEQQRQQQEKLLAEENQRLRERLQRLEEEHRAALAHSEEIATSQAAATKALPNGRDALDGPSMEAEPEYTFEGLRQKVPAQQLQEAGILSMEELQRLTQGHTTVAELTQREDVHRYLKGGSSIAGLLLKPTNEKLSVYTALQRQLLSPGTALILLEAQAASGFLLDPVRNRRLTVNEAVKEGVVGPELHHKLLSAERAVTGYKDPYTGEQISLFQAMKKDLIVRDHGIRLLEAQIATGGIIDPVHSHRVPVDVAYQRGYFDEEMNRVLADPSDDTKGFFDPNTHENLTYLQLLERCVEDPETGLRLLPLTDKAAKGGELVYTDTEARDVFEKATVSAPFGKFQGKTVTIWEIINSEYFTAEQRRDLLRQFRTGRITVEKIIKIVITVVEEHERKGQLCFEGLRALVPAAELLDSGVISHEVYQQLQRGERSVREVAEADEVRQALRGTSVIAGVWLEEAGQKLSIYEALRRDLLQPEVAVALLEAQAGTGHIIDPATSARLTVDEAVRAGLVGPEMHEKLLSAEKAVTGYRDPYSGQSVSLFQALKKGLIPREQGLRLLDAQLSTGGIVDPSKSHRVPLDVAYARGYLDKETNRALTSPRDDARVYLDPSTREPVTYSQLQQRCRSDQLTGLSLLPLSEKAVRARQEEVYSELQARETLEKAKVEVPVGGFKGRALTVWELISSEYFTEEQRQELLRQFRTGKVTVEKVIKILITIVEEVETQRQERLSFSGLRAPVPASELLASKILSRTQFEQLKDGKTSVKDLSEVGSVRTLLQGSGCLAGIYLEDSKEKVTIYEAMRRGLLRPSTATLLLEAQAATGFLVDPVRNQRLYVHEAVKAGVVGPELHEKLLSAEKAVTGYKDPYSGSTISLFQAMKKGLVLRDHAIRLLEAQIATGGIIDPVHSHRLPVDVAYQRGYFDEEMNRVLADPSDDTKGFFDPNTHENLTYLQLLERCVEDPETGLRLLPLRGAEKTEVVETTQVYTEEETRRAFEETQIDIPGGGSHGGSSMSLWEVMQSDMIPEDQRARLMADFQAGRVTKERMIIIIIEIIEKTEIIRQQNLASYDYVRRRLTAEDLYEARIISLETYNLFREGTKSLREVLEMESAWRYLYGTGSVAGVYLPGSRQTLTIYQALKKGLLSAEVARLLLEAQAATGFLLDPVKGERLTVDEAVRKGLVGPELHDRLLSAERAVTGYRDPYTEQPISLFQAMKKELIPAEEALRLLDAQLATGGIVDPRLGFHLPLEVAYQRGYLNKDTHDQLSEPSEVRSYVDPSTDERLSYTQLLKRCRRDDNSGQMLLPLSDARKLTFRGLRKQITVEELVRSQVMDEATALQLQEGLTSIEEVTKNLQKFLEGTSCIAGVFVDATKERLSVYQAMKKGIIRPGTAFELLEAQAATGYVIDPIKGLKLTVEEAVRMGIVGPEFKDKLLSAERAVTGYKDPYSGKLISLFQAMKKGLILKDHGIRLLEAQIATGGIIDPEESHRLPVEVAYKRGLFDEEMNEILTDPSDDTKGFFDPNTEENLTYLQLMERCITDPQTGLCLLPLKEKKRERKTSSKSSVRKRRVVIVDPETGKEMSVYEAYRKGLIDHQTYLELSEQECEWEEITISSSDGVVKSMIIDRRSGRQYDIDDAITKNLIDRSALDQYRAGTLSITEFADMLSGNAGGFRSRSSSVGSSSSYPISSAVPRTQLASWSDPTEETGPVAGILDTETLEKVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPSTGERFPVTEAVNKGLVDKIMVDRINLAQKAFCGFEDPRTKTKMSAAQALKKGWLYYEAGQRFLEVQYLTGGLIEPDTPGRVSLDEALQRGTVDARTAQKLRDVSAYSKYLTCPKTKLKISYKDALDRSMVEEGTGLRLLEAAAQSSKGYYSPYSVSGSGSTAGSRTGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSGYGRRYASGPSASLGGPESAVA"
misc_feature 191..556 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family; Region: CH_PLEC-like_rpt1; cd21188" /db_xref="CDD:409037" misc_feature order(200..202,212..214,413..415,419..424,431..436, 440..442,467..493,506..508,512..517,521..526,533..538, 545..547) /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409037" misc_feature 593..910 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="second calponin homology (CH) domain found in plectin and similar proteins; Region: CH_PLEC_rpt2; cd21238" /db_xref="CDD:409087" misc_feature order(599..601,611..613,761..763,767..772,779..784, 788..790,815..841,860..862,866..871,875..880,887..892, 899..901) /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409087" misc_feature order(683..685,692..694,752..763,767..772) /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:409087" misc_feature 1964..2500 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 2273..2290 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 2489..2689 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="SH3 domain; Region: SH3_10; pfam17902" /db_xref="CDD:407754" misc_feature 2792..3025 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Spectrin like domain; Region: Spectrin_like; pfam18373" /db_xref="CDD:436447" misc_feature <3188..4798 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; Region: SbcC; COG0419" /db_xref="CDD:223496" misc_feature <4145..6265 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature <5276..7819 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature 8183..8299 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 8297..8413 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 8408..8518 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 8525..8641 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 9161..9274 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 9281..9397 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 9392..9502 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 9509..9625 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 10160..10276 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 10274..10390 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 10385..10480 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 10502..10618 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 11162..11272 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 11279..11395 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 11390..11500 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 11507..11623 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 11888..12001 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 12008..12124 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 12236..12352 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature <12539..12625 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 12935..13036 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 13043..13159 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 13271..13387 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" ORIGIN
ctgcgcctctcccctcccccaacttctgctgacacggctggaaagctgtgccctccccggcctcaccactgccgctacaggcttgctgccttagaggggcctgtgaccctccccacgcccctcacccgctccctgttggccccgtgggctcctgtcgctgtccccaatgaagatcgtgcccgatgaacgagaccgtgtgcagaagaaaactttcaccaagtgggtcaataaacaccttatcaagcactggagggcagaggctcaaaggcacatcagtgacctgtatgaagacctccgtgatggccacaacctcatctccctgctggaagtcctctcaggagacagcctgccgagggagcgggacgtaatcaggagtgtacgcctgccccgagagaaggggaggatgcgtttccacaagctgcaaaacgttcagattgccctggactatctccgacatcggcaggtgaagttggtgaacatcagaaatgatgacatcgccgatggcaaccccaagctgaccctgggcctgatctggacaatcatcctgcacttccagatctcagacattcaggtgagcggccagtccgaggacatgacagccaaggagaagctgctgctgtggtctcagcgtatggtagagggctaccaaggcctgcgctgtgacaacttcaccaccagctggcgcgacggccggctcttcaatgctatcatccacaggcacaagcccatgctcatagacatgaataaagtgtaccgacagaccaacctggagaacctagaccaggccttctccgtggcagagcgggacctgggagttaccaggctcctggacccagaagatgtggatgtccctcagcctgatgagaagtccatcatcacctacgtttcatccctgtatgatgccatgccccgtgtgccgggcgcacaggatggagtgagggccaatgagctgcagcttcgttggcaagagtaccgggagcttgtgctgctgctgctacagtggatccggcaccacaccgctgcttttgaggagcgcaagttcccctccagctttgaggagattgagatcctatggtgccagtttctgaagttcaaggagacagaacttcctgccaaggaggcagacaagaaccggtccaaaggcatctaccagtctttggagggagcagtacaagcaggccagctcaagattccccctggctaccacccgctagacgtggaaaaggagtggggcaagctgcacgtggccatcctggagcgggagaagcaactccggagcgagtttgagaggctggagtgtcttcagcgcattgtgagcaagctacagatggaggctgggctatgtgaggagcagctgaaccaggccgattccctactgcagtcggatattcggctgctggcctcaggcaaggcggcacagcgggctggggaagtggagagagacctggacaaggctgatggtatgatccggctgttgttcaatgatgtgcagacccttaaagatgggcggcatccacagggtgaacagatgtaccggagggtgtatcgtctgcatgagcgcctggtagccatccgcactgaatacaacctccggctgaaggcaggggtgggtgcccctgtgacccaggtgaccctgcagagcacacagaggcgcccagagctagaggactccacactgcgttacctgcacgacctgctggcatgggtggaggagaaccagcgtcgaatagacggtgctgagtggggcgtggacttgcccagtgtagaggcacagctgggcagccaccgaggcatgcatcagtctattgaggaattccgggccaagatcgagcgggctcggaatgatgagagccagctctcccctgccacccgaggtgcctaccgagactgcctgggccgcctggacctgcagtatgcaaagctgctgaactcctccaaggcccgcctccggtccctggagagcttgcatgggtttgtggcggcagctaccaaggagctgatgtggctgaatgagaaggaagaggaagaagtgggctttgattggagtgaccgcaacaccaacatggctgccaagaaagaaagttactcggccctgatgcgtgagctggagatgaaggaaaagaaaattaaggagatccagaacacgggggacaggttgctgcgggaagaccatcctgcccggcccacagtggagtccttccaggctgccctgcagacacagtggagctggatgctgcagctgtgttgctgcattgaagcgcacttgaaagagaacacagcctacttccagttcttctcagatgttcgggaggctgaggaacagttgcagaaactacaggagacgttacgcaggaagtacagctgtgaccgctccatcactgtcacaaggcttgaggacctgctgcaggatgcccaggatgagaaggagcaactgaatgagtacaaagggcacctctcaggcctggccaagcgggccaaggctattgtgcagctgaagccacgcaaccctgcccaccctgtgcggggtcacgtgcccctgctagctgtgtgtgactacaagcaggtggaggtgactgtgcacaagggtgaccaatgccagctggtgggccctgcccagccgttccactggaaggtgctcggtggttccagcagtgaggctgccgtgccttctgtgtgctttcttgtgccgccacccaaccaggaggcccaggaagctgttgctaggctggaggcccagcatcaggccctggttactctgtggcaccagcttcacgtggacatgaagagtcttctggcatggcagagcctcaatcgtgacatacagctcatccggtcctggtccctagtcacgttccgcacgctgaagcccgaggagcagcggcaagctctgcgcaacctggagttgcactaccaggccttccttcgagacagccaggacgctggtggctttgggcccgaggaccggctggtggcagagcgcgaatatggatcttgtagtcgccactaccagcagctgctacaaagcctggagcagggtgagcaggaggagtctcgctgtcagcgatgcatctcggagctcaaggacattcggctgcaactggaggcctgtgagactcggactgtgcaccgtctgcggctgccactggataaagaccccgcacgggagtgtgcccagcgcatcgctgagcaacagaaagcacaggctgaggtggaggggctgggcaagggagttgcccggctgtctgctgaggctgagaaagttctggccttgccagagccgtcacctgctgcaccaactctgcgctcggagttggaattgaccctgggcaagctggaacaggtcagaagcctgtctgccatctacttggagaaactcaagaccatcagcttggtaattcgcagtacccagggggctgaggaggtgcttaaaacacacgaggagcacctgaaggaggcccaggccgtgcctgccacactccaagagctcgaagtcaccaaggcttcactaaagaagctgcgggcccaggcggaggcacagcagcctgtattcaacaccctacgagatgagctgaggggggcacaggaagttggtgaacggctacagcagcggcatggtgagcgggacgtggaagtagagcgctggcgagaacgtgtcactcagttgctggagcgctggcaggctgtgctagcccagactgatgtgcggcagcgggagcttgaacagctgggccgccaacttcgctactaccgtgaaagtgcggatccgctgagctcctggctgcaggatgccaagagccggcaagagcagatccaggctgtgccaatagccaacagtcaggctgcacgagaacagctgcgccaggagaaggccctgctggaggagattgagcgccatggtgagaaggttgaggagtgccagaagtttgctaagcagtacatcaatgcaatcaaggactatgagctccagctgatcacctacaaggctcagcttgaacctgtggcctcccccgccaagaagcccaaggttcagtctggatcggagagcgtcatccaggagtacgtggatctgcgtacacgctacagtgagctgaccacactcacgagtcagtacatcaagttcatcagtgagacactgcgccgcatggaagaggaagagcggctggctgagcaacagcgggcagaggagcgggagcgcctggccgaggtggaggccgcgctggagaagcagcggcagctggctgaggcccatgcccaggccaaggcacaggccgagctggaggcacgagaactgcagcggcgcatgcaggaggaggtgacgcggcgcgaggaggcggcggtggacgcacagcaacagaagcgcagcatccaagaggagctgcagcatctgcggcaaagctcagaggcagagatccaggccaaggcccagcaggtggaggctgcagagcgcagccgcatgcgcattgaggaagagatccgcgtagtccgtctgcagctagagacaactgagcgtcagcgtggaggggcggaggatgagctgcaggctctgcgtgcacgggctgaggaggcagaagcacagaagcggcaggctcaggaggaagccgagcgcttgcggaggcaggtgcaggatgagagccaacgcaaacggcaggcggaggccgagctggccctgcgtgtgaaggcagaagcggaggcagcgcgagagaagcagcgggccctgcaggctctggatgaactgaaactgcaggccgaggaggccgaacggcggctgcgccaagccgaggcagagagggctcgccaagtgcaggtagccctggagacagcgcagcgtagtgcagaagtggagctgcagagcaagcgtgcgtcctttgcagagaagaccgcacagttggagcgcacgctgcaggaagagcacgtgacagtgacacagctgcgggaggaggcggaacggcgggcacagcagcaggctgaagccgagcgagcccgtgaggaagccgagcgggagctggagcgctggcagctgaaggccaatgaggcgctgcggctgcggctgcaggcagaggaggtggcacagcagaagagcctggcccaggccgatgcagagaagcagaaggaagaggcagaacgggaagcccggcggcggggcaaggcagaggagcaggccgtgcggcagcgagagctggctgagcaggagctggagaagcagcggcagctggcagagggcaccgcccagcagcgcctggctgccgagcaggagctgattcgcctgcgggcagagacggagcaaggtgagcagcagcggcagctgctggaggaagagctggcccggctacagcacgaagcgacagcagccacacagaagcgccaggagctggaggctgagctggcgaaggttcgggcagagatggaggtactgctggccagcaaggcacgagccgaagaggagtctcgctccaccagtgaaaagtccaagcagaggctggaagctgaggcagggcggtttcgagagctggctgaggaggctgcccgcctgcgtgctctggccgaggaggccaagcggcagcggcagttggccgaggaggacgcggcacgccagcgggccgaggcggagcgagtgcttacggagaagctggctgccatcagtgaggccacaaggctcaagacggaggcagagattgcactcaaagagaaggaggccgagaacgagcgcctgaggcgcctggctgaagatgaggccttccagcggcgccggctggaggagcaggcagcacagcacaaggcagacatagaggagcgcctggcccagctgcgcaaggcatccgagagcgagctggagcgacagaaggggttggtggaggataccctgcggcagcggcggcaggtggaggaggagatcatggctctgaaggcgagcttcgagaaggccgcggctggcaaggcagaactggagctggagcttggccgcatccgcagcaatgccgaggacaccatgcgcagcaaggagctggccgagcaggaggcagcgcggcagcggcagttggcagctgaggaggagcagaggcgccgggaagccgaggagcgggtgcagaggagcctggcagcggaggaggaagccgcacggcagcgcaaggtcgcactggaggaagtcgagcggctcaaggccaaggttgaggaagcgcggcgcctgcgagagcgagctgagcaggagtctgcgaggcagctgcagctggcccaggaggctgcccagaaacggctgcaggcggaggagaaggcgcacgcctttgtggtgcagcagcgagaagaggagctgcagcagactcttcagcaagagcagaacatgctggagcggctgcggagcgaggcagaggcagcgcggcgagctgctgaggaggcggaggaggcccgggagcaggcagaacgtgaggcagcgcagtctaggaagcaagtggaagaggccgagcggctgaagcagtcggcagaggagcaggctcaggcccaggcccaggcgcaggcggctgcagagaaactgcgcaaggaagcggagcaggaggcggcgcgtcgggcccaggcggagcaggctgcgttgaaacagaagcaggcagccgacgcggagatggagaagcacaagaagtttgcagagcagacgctacggcagaaggctcaggtagagcaggagctgaccacgctgaggctgcagctcgaggagaccgaccaccagaagagcatcctggatgaggagctgcagcggctaaaggctgaggtaacagaggcagcccggcagcgtagccaggtagaggaggagctcttctctgtccgcgtgcagatggaggagctgggcaaactcaaggctcgcattgaagctgaaaaccgggcactcatccttcgtgacaaggacaacacacagcgcttcctggaggaggaggccgagaagatgaaacaggtggcagaggaagctgcacggttgagcgtagctgcccaggaggcagcaaggctgcggcagctagccgaggaggacctggcccagcagcgggccctggcggagaagatgctgaaggagaagatgcaggcggtgcaggaagccacaaggctcaaggctgaggctgagctgctgcagcagcagaaggagctggcacaggagcaggcccggcggctgcaggaggacaaggagcaaatggctcagcagttggtagaggagacacagggtttccagcggaccctggaggctgagcggcagcggcagctagaaatgagcgcagaggctgaacgcctcaagttgcgcatggctgagatgagccgggctcaggcccgtgcagaggaggatgcccagcgcttccggaagcaggctgaagagatcggcgaaaagctgcaccgcactgaactcgctacacaggagaaggtgacattggtgcagactctcgagatccagcgacagcagagtgaccaagatgccgagcgtctgagggaggccattgctgagctggagcgtgagaaggagaagctcaagcaggaggcgaagttactgcagctcaagtctgaggagatgcagactgtgcagcaggagcagatactgcaggagacacaggccctgcagaagagctttctctctgagaaggacagcttgctgcaacgcgaacgcttcatcgagcaggagaaggccaagctggagcagcttttccaggacgaggtggcaaaagcaaaacagctgcaggaggagcagcagcggcagcagcagcagatggagcaggaaaagcaggagctggtggccagcatggaggaggcccggaggcggcagcgtgaggcagaggagggtgtgaggcgcaagcaagaggaactgcagcgtctggagcagcagcggcagcagcaggagaaactactggcagaggagaaccagaggctgcgggagcggctgcagcgcctggaggaagagcaccgagctgcgttggcgcactctgaggagatcgccacctcccaggctgctgccacaaaagcactgcccaatggccgcgacgcacttgatggcccctccatggaggccgagcccgagtacaccttcgagggattacgtcagaaggtgccagctcagcagctacaggaagcaggcattctgagcatggaggaactgcagcgtttgacacagggtcacaccacggtggctgagctcacgcagcgggaagatgtgcaccgatacctgaagggcggcagcagcatcgcaggattgctcctgaagcccaccaatgagaaactgagtgtctacacagccctacagcggcagctgctcagccctggaacagcccttatcttgcttgaggcccaggcagcctcgggcttcctgctggaccctgtgcggaaccggcggctgacggtcaatgaggctgtgaaggagggtgtggtgggtcccgagctgcaccacaagctgctgtcagctgagcgtgccgtcactggctacaaggacccttacacaggagaacagatctctctcttccaggccatgaagaaggacctcattgtcagggaccatggcatccgcctgctggaagcccagatcgccacaggtggcatcattgaccctgtacacagccaccgtgttcccgtggacgtggcctaccagcgtggctacttcgatgaggagatgaaccgtgtgctggctgacccaagcgatgacaccaagggcttctttgaccccaacactcacgagaacctcacgtacctgcagctgctggagcgctgtgtggaggaccccgagacaggcctgcgcctcctgccactcacagacaaggctgccaagggtggtgagctggtgtacactgacacggaggcccgtgacgtcttcgaaaaggccacagtgtctgcaccattcggcaagttccagggcaagaccgtgaccatctgggagatcatcaactcagagtacttcacagcggagcagcgacgggacctgctccggcagttccgcacgggccgcatcacggtggagaagatcatcaagattgtcatcacggtggtagaggaacacgagcggaagggccagctctgctttgagggcctccgtgcccttgtgcctgctgcagagctgctggacagtggagtcatcagtcatgaagtctaccagcagctgcagcggggtgagcgctctgtgcgggaagtggccgaggcagacgaggtgaggcaggccctgcggggtaccagtgtcattgccggtgtgtggctggaagaagcagggcagaagctgagcatctatgaggccctgaggagagatttgctgcagccagaggtggctgtggccttgctggaggcccaggctggcactgggcacatcattgaccctgccacgagtgccaggctgactgtggatgaggcagtgcgtgctggcctggtgggtcctgagatgcacgagaagctcttgtcagctgagaaggctgtaacaggctatagggatccctactcgggacagagcgtctcgctcttccaggctctgaagaagggtctcatcccccgagaacagggcctgcgcctgctggatgcccagttatccactggtggcattgtagaccccagcaaaagccaccgtgtgcccctggatgttgcctatgcccggggctacctggacaaagagactaacagggccctgacgtcacccagagacgatgccagagtctaccttgaccccagcacccgggagccagtcacctacagccagctccaacagcggtgccggtctgaccagctgactgggttgagcctactgcccctctcagagaaggccgtccgggcccggcaggaagaggtctactctgagctccaggcccgtgagacattggagaaggccaaggtggaggttcctgtgggcggctttaagggcagggcgctgacagtgtgggagctcataagctcggaatacttcactgaggagcagcggcaggagctgctacggcagttccgcacaggcaaggtcactgtagagaaggtcatcaagattcttatcaccattgtggaggaggtggagactcaacggcaggagagactgtccttcagtggcctccgtgcccctgtgccggccagtgagctcctggcctccaagatcctcagcagaactcagtttgagcagctcaaggatggcaagacatcagtcaaagatctgtcagaggtgggctctgtgcggacactgctgcaaggcagcggctgcctggctggcatctatctggaggactcgaaggagaaagtaaccatctatgaggccatgcgccggggcctcctcagacccagcacagccacactcctgctggaggcccaggcggccactggttttctagtggaccctgtgcggaaccaacgtctgtacgtccatgaagctgtcaaggctggagtggtgggcccggagctccatgagaagctgctgtcggctgagaaggcggtcactggttacaaagatccctactctggcagcaccatctcgctgttccaggccatgaagaagggcttggtcctcagggaccatgccatccgcctgctggaggcccagattgccacaggtggcatcattgaccctgtgcacagtcaccgcctgcccgtagatgttgcctaccagcgtggctacttcgatgaggagatgaaccgtgtgctggctgacccaagtgatgacaccaagggcttcttcgaccccaacacccacgagaacctcacgtacctgcagctactggagcgctgcgtggaggaccccgagacaggcctgcgcctcctgccactcagaggggcagagaagacagaggtggtagaaaccacacaggtgtatactgaggaggagactcggagggcattcgaggagacgcagattgacatcccaggtggtggcagccacggtggctcctccatgtctctatgggaggtgatgcagtcagacatgatcccagaggaccagcgtgcccggctcatggccgactttcaggctggcagagtgaccaaggagcgcatgatcattatcatcatcgaaatcattgagaagacggagatcatccgccagcagaacctcgcctcctatgactacgtacgccgccgcctcaccgccgaagacctgtatgaggcccggatcatctcccttgagacctacaacctcttccgggaaggcaccaagagcctccgtgaggttctggagatggaatctgcctggcgctacctttacggcacaggatcggtggccggtgtctacctgcctggctctaggcagacgctaaccatctaccaggcccttaagaaggggctgctgagtgccgaggtggcccgcttgctgctggaagcacaggcagccacaggctttctgctggacccagtgaaaggcgagaggctgactgtggacgaggccgtgcggaagggtctggtaggccccgagctgcacgatcggctcctctctgccgagcgagctgtaactggctaccgagacccctacaccgaacagcccatctcactcttccaggccatgaagaaggagctgatccctgccgaggaggcactgaggctgctggatgctcagctagccacaggaggcattgtggacccccgcctgggtttccacctccccctggaggtggcttaccaacgaggctacctcaataaggacacgcatgaccagttgtcagagcccagtgaggtgcgcagctatgtggacccctccacggatgagcgtctcagctacacacagctgctcaagcgttgccgccgtgacgacaacagcggccagatgctgctgccgctctctgatgcccgcaagctgaccttccgcggcctgcgcaagcagatcaccgtggaggagctggtacgctctcaggtcatggatgaggccacagcactgcagctgcaagaaggcctgacctccattgaggaggtcactaagaacctgcagaagttccttgagggtaccagctgcattgctggagtctttgttgatgctaccaaggaacggctgtcggtgtaccaggccatgaagaagggcatcatccgtcccgggacagccttcgagctcctggaagcgcaggcagccaccggctacgtcattgaccctatcaaggggctcaagctgactgtggaagaggccgtgcgcatgggtatcgtgggccccgagttcaaggacaagctgctgtctgctgagcgtgcggtcactggctacaaggacccttactctgggaaactcatctctctcttccaggccatgaagaagggcctgatcctgaaggaccatggcatccgcctgctagaggctcagatcgccaccggtggcatcattgaccctgaggagagccaccgcctgcctgtggaagtggcctataagcgtggtctctttgatgaggagatgaacgagatcctgactgacccctcagatgacaccaagggcttcttcgaccccaacaccgaggagaacctcacatacctgcagctgatggagcgctgtatcactgacccccagactggcctgtgtctcctgccgctgaaggaaaagaagcgggagcggaagacgtcctccaagtcctcagtgcgcaagcgccgcgtggtgattgtggaccctgagacgggcaaggagatgtcagtgtatgaggcctaccgcaagggcctcatagaccaccagacatacctggagttgtcagagcaggagtgcgagtgggaagaaatcaccatctcttcctcggacggcgtcgtcaaatctatgatcatcgaccgccgctctggccgccagtatgacattgatgacgccatcaccaagaacctcattgaccgctcagcactggaccagtaccgcgctggcacactttctatcaccgagtttgccgacatgctctcaggcaacgctggtggcttccgctcccgctcctcctctgtgggctcatcttcctcctaccccatcagttctgctgtccctaggacccagctagcctcctggtctgatcctactgaggagactggcccagtggccggcatcctagacacagagactctggagaaggtgtccatcacagaggccatgcaccgcaacctggtagacaacatcactggccagcggttgctggaggcacaggcctgcaccgggggcatcattgaccccagcactggtgagcgcttcccggtcactgaggctgtcaacaagggcctggtggacaagatcatggtagaccgtatcaatctggcccagaaggccttctgtgggtttgaggacccacgcaccaagaccaagatgtcagctgcccaggccctgaagaagggctggctttactacgaggcaggccagcgtttcctcgaggtgcagtacctgacgggtggtctgattgagcctgacacacctggccgtgtgtctcttgatgaagccttgcaacgtggcactgtggatgcccgcacagcccagaagcttcgtgatgtcagtgcctactccaagtacctcacgtgccccaagaccaagctcaagatctcttacaaggacgctctggatcggagcatggtggaggagggcacagggctgaggctgctggaagccgcggcacagtccagcaagggctactacagcccgtacagtgtcagtggctctggctctactgctggttcacgcactggttcacgcaccggctccagggccggctcccgtcgtggcagctttgatgccactggctctggcttctccatgaccttttcttcttcctcctactcttcctcaggctatggccgccgctatgcctcagggccttcagcctctcttgggggccctgagtctgcagtggcctgatcccccagcctgtatcctgccttcccgctctgcatgtcgccaggctccccgtggaggcgctggggtcttttctttcttcttcttttttttttttttttttttttttttttaacatttaaaggtgtcttcctcccaagcggtgcctaaaatctaaccaaaaagaccagactaacacattaatatatatatatatatgcgatgtccagacagcctgtgtcttgggaaacagggctggcccaggcccagtgaccactccactctccttgggcctccctaatcctttctacctgccactcaccacagctaggtgccttggagaatccagagctgggcactcagcccactactcctgtctctcctgggaggattgccatctgggaaaggcccccagacctctaagccaaccccactggatgtctacctgctggtcctagctgctgaggggaactggggacggtcctgtgagcagacagctgttgagtctcttgaggcctctgccctgagccagctgcttctccccagtgtatacctgaatattcagtgggttttgctggcaaaggaaagatcccaggccaaccatctcttccagcctgcccagagaagccccttccccatgggaagataaggcctggtcctggccccagcctcccgcctggctcctgcagctgccattggagctgtgctttgtagctcactaccccatacttattcccttgagacctgagcctctgcttcagccttccagcctcaactccccttgtaagtgccttctgtgtccttgtacccaggccctaaagacccagacccagggcaagagatggacattctggctgggcggggctggagggttctgcagatctgagaattcttctccagaggcccaggggctcttcaagcctgtggaacccctctgggtgctgctgcccaccccactcccagggagccctggccagcccagctgtgctaacataagtacttggccagttacactctcccttccctggccttggtggctcctacccctgcctccaccctctgagtgagctttgcatgttccactaaccttgagctggtgacaggtggagatgccaggcagaacactaacctgaccatgggcgggggccctgcggtgtccgcccctcaataaaagcaattccaaccttca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]