2024-05-06 12:55:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_017595091 15000 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus plectin (Plec), transcript variant X12, mRNA. ACCESSION XM_017595091 VERSION XM_017595091.2 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051342.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 21, 2021 this sequence version replaced XM_017595091.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..15000 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="7" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..15000 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="plectin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 62 ESTs, 42 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns" /db_xref="GeneID:64204" /db_xref="RGD:621649" CDS 144..13835 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /codon_start=1 /product="plectin isoform X10" /protein_id="XP_017450580.1" /db_xref="GeneID:64204" /db_xref="RGD:621649" /translation="
MAGTWAAKGVFTSQREVLLERPCWLDGGCEQIRRGYLYGQLCCVDERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPRERDVIRSVRLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVPGAQDGVRANELQLRWQEYRELVLLLLQWIRHHTAAFEERKFPSSFEEIEILWCQFLKFKETELPAKEADKNRSKGIYQSLEGAVQAGQLKIPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLECLQRIVSKLQMEAGLCEEQLNQADSLLQSDIRLLASGKAAQRAGEVERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHERLVAIRTEYNLRLKAGVGAPVTQVTLQSTQRRPELEDSTLRYLHDLLAWVEENQRRIDGAEWGVDLPSVEAQLGSHRGMHQSIEEFRAKIERARNDESQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHGFVAAATKELMWLNEKEEEEVGFDWSDRNTNMAAKKESYSALMRELEMKEKKIKEIQNTGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENTAYFQFFSDVREAEEQLQKLQETLRRKYSCDRSITVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAIVQLKPRNPAHPVRGHVPLLAVCDYKQVEVTVHKGDQCQLVGPAQPFHWKVLGGSSSEAAVPSVCFLVPPPNQEAQEAVARLEAQHQALVTLWHQLHVDMKSLLAWQSLNRDIQLIRSWSLVTFRTLKPEEQRQALRNLELHYQAFLRDSQDAGGFGPEDRLVAEREYGSCSRHYQQLLQSLEQGEQEESRCQRCISELKDIRLQLEACETRTVHRLRLPLDKDPARECAQRIAEQQKAQAEVEGLGKGVARLSAEAEKVLALPEPSPAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRSTQGAEEVLKTHEEHLKEAQAVPATLQELEVTKASLKKLRAQAEAQQPVFNTLRDELRGAQEVGERLQQRHGERDVEVERWRERVTQLLERWQAVLAQTDVRQRELEQLGRQLRYYRESADPLSSWLQDAKSRQEQIQAVPIANSQAAREQLRQEKALLEEIERHGEKVEECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTRYSELTTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAELEARELQRRMQEEVTRREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQVEAAERSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREKQRALQALDELKLQAEEAERRLRQAEAERARQVQVALETAQRSAEVELQSKRASFAEKTAQLERTLQEEHVTVTQLREEAERRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQKSLAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAERVLTEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKASFEKAAAGKAELELELGRIRSNAEDTMRSKELAEQEAARQRQLAAEEEQRRREAEERVQRSLAAEEEAARQRKVALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQQTLQQEQNMLERLRSEAEAARRAAEEAEEAREQAEREAAQSRKQVEEAERLKQSAEEQAQAQAQAQAAAEKLRKEAEQEAARRAQAEQAALKQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEETDHQKSILDEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQRTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVTLVQTLEIQRQQSDQDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQQEQILQETQALQKSFLSEKDSLLQRERFIEQEKAKLEQLFQDEVAKAKQLQEEQQRQQQQMEQEKQELVASMEEARRRQREAEEGVRRKQEELQRLEQQRQQQEKLLAEENQRLRERLQRLEEEHRAALAHSEEIATSQAAATKALPNGRDALDGPSMEAEPEYTFEGLRQKVPAQQLQEAGILSMEELQRLTQGHTTVAELTQREDVHRYLKGGSSIAGLLLKPTNEKLSVYTALQRQLLSPGTALILLEAQAASGFLLDPVRNRRLTVNEAVKEGVVGPELHHKLLSAERAVTGYKDPYTGEQISLFQAMKKDLIVRDHGIRLLEAQIATGGIIDPVHSHRVPVDVAYQRGYFDEEMNRVLADPSDDTKGFFDPNTHENLTYLQLLERCVEDPETGLRLLPLTDKAAKGGELVYTDTEARDVFEKATVSAPFGKFQGKTVTIWEIINSEYFTAEQRRDLLRQFRTGRITVEKIIKIVITVVEEHERKGQLCFEGLRALVPAAELLDSGVISHEVYQQLQRGERSVREVAEADEVRQALRGTSVIAGVWLEEAGQKLSIYEALRRDLLQPEVAVALLEAQAGTGHIIDPATSARLTVDEAVRAGLVGPEMHEKLLSAEKAVTGYRDPYSGQSVSLFQALKKGLIPREQGLRLLDAQLSTGGIVDPSKSHRVPLDVAYARGYLDKETNRALTSPRDDARVYLDPSTREPVTYSQLQQRCRSDQLTGLSLLPLSEKAVRARQEEVYSELQARETLEKAKVEVPVGGFKGRALTVWELISSEYFTEEQRQELLRQFRTGKVTVEKVIKILITIVEEVETQRQERLSFSGLRAPVPASELLASKILSRTQFEQLKDGKTSVKDLSEVGSVRTLLQGSGCLAGIYLEDSKEKVTIYEAMRRGLLRPSTATLLLEAQAATGFLVDPVRNQRLYVHEAVKAGVVGPELHEKLLSAEKAVTGYKDPYSGSTISLFQAMKKGLVLRDHAIRLLEAQIATGGIIDPVHSHRLPVDVAYQRGYFDEEMNRVLADPSDDTKGFFDPNTHENLTYLQLLERCVEDPETGLRLLPLRGAEKTEVVETTQVYTEEETRRAFEETQIDIPGGGSHGGSSMSLWEVMQSDMIPEDQRARLMADFQAGRVTKERMIIIIIEIIEKTEIIRQQNLASYDYVRRRLTAEDLYEARIISLETYNLFREGTKSLREVLEMESAWRYLYGTGSVAGVYLPGSRQTLTIYQALKKGLLSAEVARLLLEAQAATGFLLDPVKGERLTVDEAVRKGLVGPELHDRLLSAERAVTGYRDPYTEQPISLFQAMKKELIPAEEALRLLDAQLATGGIVDPRLGFHLPLEVAYQRGYLNKDTHDQLSEPSEVRSYVDPSTDERLSYTQLLKRCRRDDNSGQMLLPLSDARKLTFRGLRKQITVEELVRSQVMDEATALQLQEGLTSIEEVTKNLQKFLEGTSCIAGVFVDATKERLSVYQAMKKGIIRPGTAFELLEAQAATGYVIDPIKGLKLTVEEAVRMGIVGPEFKDKLLSAERAVTGYKDPYSGKLISLFQAMKKGLILKDHGIRLLEAQIATGGIIDPEESHRLPVEVAYKRGLFDEEMNEILTDPSDDTKGFFDPNTEENLTYLQLMERCITDPQTGLCLLPLKEKKRERKTSSKSSVRKRRVVIVDPETGKEMSVYEAYRKGLIDHQTYLELSEQECEWEEITISSSDGVVKSMIIDRRSGRQYDIDDAITKNLIDRSALDQYRAGTLSITEFADMLSGNAGGFRSRSSSVGSSSSYPISSAVPRTQLASWSDPTEETGPVAGILDTETLEKVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPSTGERFPVTEAVNKGLVDKIMVDRINLAQKAFCGFEDPRTKTKMSAAQALKKGWLYYEAGQRFLEVQYLTGGLIEPDTPGRVSLDEALQRGTVDARTAQKLRDVSAYSKYLTCPKTKLKISYKDALDRSMVEEGTGLRLLEAAAQSSKGYYSPYSVSGSGSTAGSRTGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSGYGRRYASGPSASLGGPESAVA"
misc_feature 285..635 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family; Region: CH_PLEC-like_rpt1; cd21188" /db_xref="CDD:409037" misc_feature order(294..296,306..308,492..494,498..503,510..515, 519..521,546..572,585..587,591..596,600..605,612..617, 624..626) /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409037" misc_feature 672..989 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="second calponin homology (CH) domain found in plectin and similar proteins; Region: CH_PLEC_rpt2; cd21238" /db_xref="CDD:409087" misc_feature order(678..680,690..692,840..842,846..851,858..863, 867..869,894..920,939..941,945..950,954..959,966..971, 978..980) /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409087" misc_feature order(762..764,771..773,831..842,846..851) /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:409087" misc_feature 2043..2579 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 2352..2369 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 2568..2768 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="SH3 domain; Region: SH3_10; pfam17902" /db_xref="CDD:407754" misc_feature 2871..3104 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Spectrin like domain; Region: Spectrin_like; pfam18373" /db_xref="CDD:436447" misc_feature <3267..4877 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; Region: SbcC; COG0419" /db_xref="CDD:223496" misc_feature <4224..6344 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature <5355..7898 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature 8262..8378 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 8376..8492 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 8487..8597 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 8604..8720 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 9240..9353 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 9360..9476 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 9471..9581 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 9588..9704 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 10239..10355 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 10353..10469 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 10464..10559 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 10581..10697 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 11241..11351 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 11358..11474 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 11469..11579 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 11586..11702 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 11967..12080 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 12087..12203 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 12315..12431 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature <12618..12704 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 13014..13115 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: PLEC; smart00250" /db_xref="CDD:197605" misc_feature 13122..13238 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" misc_feature 13350..13466 /gene="Plec" /gene_synonym="Pcn; Plec1; Pltn" /note="Plectin repeat; Region: Plectin; pfam00681" /db_xref="CDD:425816" ORIGIN
caggggcaggttctccgggtctgggtattgcgtccggtgggcgggggagaacgtggaaggccacgccagggccctcagccttcaacacgggcacggcttccgtgttgttagcgaacagcccagggcgctcggggctcctggcaatggcagggacgtgggcagcgaagggcgtcttcacttcgcagagggaggtcctgttggagcggccctgctggctggatgggggctgtgagcagattcgcaggggctatctctacgggcaactgtgttgtgtagatgaacgagaccgtgtgcagaagaaaactttcaccaagtgggtcaataaacaccttatcaaggctcaaaggcacatcagtgacctgtatgaagacctccgtgatggccacaacctcatctccctgctggaagtcctctcaggagacagcctgccgagggagcgggacgtaatcaggagtgtacgcctgccccgagagaaggggaggatgcgtttccacaagctgcaaaacgttcagattgccctggactatctccgacatcggcaggtgaagttggtgaacatcagaaatgatgacatcgccgatggcaaccccaagctgaccctgggcctgatctggacaatcatcctgcacttccagatctcagacattcaggtgagcggccagtccgaggacatgacagccaaggagaagctgctgctgtggtctcagcgtatggtagagggctaccaaggcctgcgctgtgacaacttcaccaccagctggcgcgacggccggctcttcaatgctatcatccacaggcacaagcccatgctcatagacatgaataaagtgtaccgacagaccaacctggagaacctagaccaggccttctccgtggcagagcgggacctgggagttaccaggctcctggacccagaagatgtggatgtccctcagcctgatgagaagtccatcatcacctacgtttcatccctgtatgatgccatgccccgtgtgccgggcgcacaggatggagtgagggccaatgagctgcagcttcgttggcaagagtaccgggagcttgtgctgctgctgctacagtggatccggcaccacaccgctgcttttgaggagcgcaagttcccctccagctttgaggagattgagatcctatggtgccagtttctgaagttcaaggagacagaacttcctgccaaggaggcagacaagaaccggtccaaaggcatctaccagtctttggagggagcagtacaagcaggccagctcaagattccccctggctaccacccgctagacgtggaaaaggagtggggcaagctgcacgtggccatcctggagcgggagaagcaactccggagcgagtttgagaggctggagtgtcttcagcgcattgtgagcaagctacagatggaggctgggctatgtgaggagcagctgaaccaggccgattccctactgcagtcggatattcggctgctggcctcaggcaaggcggcacagcgggctggggaagtggagagagacctggacaaggctgatggtatgatccggctgttgttcaatgatgtgcagacccttaaagatgggcggcatccacagggtgaacagatgtaccggagggtgtatcgtctgcatgagcgcctggtagccatccgcactgaatacaacctccggctgaaggcaggggtgggtgcccctgtgacccaggtgaccctgcagagcacacagaggcgcccagagctagaggactccacactgcgttacctgcacgacctgctggcatgggtggaggagaaccagcgtcgaatagacggtgctgagtggggcgtggacttgcccagtgtagaggcacagctgggcagccaccgaggcatgcatcagtctattgaggaattccgggccaagatcgagcgggctcggaatgatgagagccagctctcccctgccacccgaggtgcctaccgagactgcctgggccgcctggacctgcagtatgcaaagctgctgaactcctccaaggcccgcctccggtccctggagagcttgcatgggtttgtggcggcagctaccaaggagctgatgtggctgaatgagaaggaagaggaagaagtgggctttgattggagtgaccgcaacaccaacatggctgccaagaaagaaagttactcggccctgatgcgtgagctggagatgaaggaaaagaaaattaaggagatccagaacacgggggacaggttgctgcgggaagaccatcctgcccggcccacagtggagtccttccaggctgccctgcagacacagtggagctggatgctgcagctgtgttgctgcattgaagcgcacttgaaagagaacacagcctacttccagttcttctcagatgttcgggaggctgaggaacagttgcagaaactacaggagacgttacgcaggaagtacagctgtgaccgctccatcactgtcacaaggcttgaggacctgctgcaggatgcccaggatgagaaggagcaactgaatgagtacaaagggcacctctcaggcctggccaagcgggccaaggctattgtgcagctgaagccacgcaaccctgcccaccctgtgcggggtcacgtgcccctgctagctgtgtgtgactacaagcaggtggaggtgactgtgcacaagggtgaccaatgccagctggtgggccctgcccagccgttccactggaaggtgctcggtggttccagcagtgaggctgccgtgccttctgtgtgctttcttgtgccgccacccaaccaggaggcccaggaagctgttgctaggctggaggcccagcatcaggccctggttactctgtggcaccagcttcacgtggacatgaagagtcttctggcatggcagagcctcaatcgtgacatacagctcatccggtcctggtccctagtcacgttccgcacgctgaagcccgaggagcagcggcaagctctgcgcaacctggagttgcactaccaggccttccttcgagacagccaggacgctggtggctttgggcccgaggaccggctggtggcagagcgcgaatatggatcttgtagtcgccactaccagcagctgctacaaagcctggagcagggtgagcaggaggagtctcgctgtcagcgatgcatctcggagctcaaggacattcggctgcaactggaggcctgtgagactcggactgtgcaccgtctgcggctgccactggataaagaccccgcacgggagtgtgcccagcgcatcgctgagcaacagaaagcacaggctgaggtggaggggctgggcaagggagttgcccggctgtctgctgaggctgagaaagttctggccttgccagagccgtcacctgctgcaccaactctgcgctcggagttggaattgaccctgggcaagctggaacaggtcagaagcctgtctgccatctacttggagaaactcaagaccatcagcttggtaattcgcagtacccagggggctgaggaggtgcttaaaacacacgaggagcacctgaaggaggcccaggccgtgcctgccacactccaagagctcgaagtcaccaaggcttcactaaagaagctgcgggcccaggcggaggcacagcagcctgtattcaacaccctacgagatgagctgaggggggcacaggaagttggtgaacggctacagcagcggcatggtgagcgggacgtggaagtagagcgctggcgagaacgtgtcactcagttgctggagcgctggcaggctgtgctagcccagactgatgtgcggcagcgggagcttgaacagctgggccgccaacttcgctactaccgtgaaagtgcggatccgctgagctcctggctgcaggatgccaagagccggcaagagcagatccaggctgtgccaatagccaacagtcaggctgcacgagaacagctgcgccaggagaaggccctgctggaggagattgagcgccatggtgagaaggttgaggagtgccagaagtttgctaagcagtacatcaatgcaatcaaggactatgagctccagctgatcacctacaaggctcagcttgaacctgtggcctcccccgccaagaagcccaaggttcagtctggatcggagagcgtcatccaggagtacgtggatctgcgtacacgctacagtgagctgaccacactcacgagtcagtacatcaagttcatcagtgagacactgcgccgcatggaagaggaagagcggctggctgagcaacagcgggcagaggagcgggagcgcctggccgaggtggaggccgcgctggagaagcagcggcagctggctgaggcccatgcccaggccaaggcacaggccgagctggaggcacgagaactgcagcggcgcatgcaggaggaggtgacgcggcgcgaggaggcggcggtggacgcacagcaacagaagcgcagcatccaagaggagctgcagcatctgcggcaaagctcagaggcagagatccaggccaaggcccagcaggtggaggctgcagagcgcagccgcatgcgcattgaggaagagatccgcgtagtccgtctgcagctagagacaactgagcgtcagcgtggaggggcggaggatgagctgcaggctctgcgtgcacgggctgaggaggcagaagcacagaagcggcaggctcaggaggaagccgagcgcttgcggaggcaggtgcaggatgagagccaacgcaaacggcaggcggaggccgagctggccctgcgtgtgaaggcagaagcggaggcagcgcgagagaagcagcgggccctgcaggctctggatgaactgaaactgcaggccgaggaggccgaacggcggctgcgccaagccgaggcagagagggctcgccaagtgcaggtagccctggagacagcgcagcgtagtgcagaagtggagctgcagagcaagcgtgcgtcctttgcagagaagaccgcacagttggagcgcacgctgcaggaagagcacgtgacagtgacacagctgcgggaggaggcggaacggcgggcacagcagcaggctgaagccgagcgagcccgtgaggaagccgagcgggagctggagcgctggcagctgaaggccaatgaggcgctgcggctgcggctgcaggcagaggaggtggcacagcagaagagcctggcccaggccgatgcagagaagcagaaggaagaggcagaacgggaagcccggcggcggggcaaggcagaggagcaggccgtgcggcagcgagagctggctgagcaggagctggagaagcagcggcagctggcagagggcaccgcccagcagcgcctggctgccgagcaggagctgattcgcctgcgggcagagacggagcaaggtgagcagcagcggcagctgctggaggaagagctggcccggctacagcacgaagcgacagcagccacacagaagcgccaggagctggaggctgagctggcgaaggttcgggcagagatggaggtactgctggccagcaaggcacgagccgaagaggagtctcgctccaccagtgaaaagtccaagcagaggctggaagctgaggcagggcggtttcgagagctggctgaggaggctgcccgcctgcgtgctctggccgaggaggccaagcggcagcggcagttggccgaggaggacgcggcacgccagcgggccgaggcggagcgagtgcttacggagaagctggctgccatcagtgaggccacaaggctcaagacggaggcagagattgcactcaaagagaaggaggccgagaacgagcgcctgaggcgcctggctgaagatgaggccttccagcggcgccggctggaggagcaggcagcacagcacaaggcagacatagaggagcgcctggcccagctgcgcaaggcatccgagagcgagctggagcgacagaaggggttggtggaggataccctgcggcagcggcggcaggtggaggaggagatcatggctctgaaggcgagcttcgagaaggccgcggctggcaaggcagaactggagctggagcttggccgcatccgcagcaatgccgaggacaccatgcgcagcaaggagctggccgagcaggaggcagcgcggcagcggcagttggcagctgaggaggagcagaggcgccgggaagccgaggagcgggtgcagaggagcctggcagcggaggaggaagccgcacggcagcgcaaggtcgcactggaggaagtcgagcggctcaaggccaaggttgaggaagcgcggcgcctgcgagagcgagctgagcaggagtctgcgaggcagctgcagctggcccaggaggctgcccagaaacggctgcaggcggaggagaaggcgcacgcctttgtggtgcagcagcgagaagaggagctgcagcagactcttcagcaagagcagaacatgctggagcggctgcggagcgaggcagaggcagcgcggcgagctgctgaggaggcggaggaggcccgggagcaggcagaacgtgaggcagcgcagtctaggaagcaagtggaagaggccgagcggctgaagcagtcggcagaggagcaggctcaggcccaggcccaggcgcaggcggctgcagagaaactgcgcaaggaagcggagcaggaggcggcgcgtcgggcccaggcggagcaggctgcgttgaaacagaagcaggcagccgacgcggagatggagaagcacaagaagtttgcagagcagacgctacggcagaaggctcaggtagagcaggagctgaccacgctgaggctgcagctcgaggagaccgaccaccagaagagcatcctggatgaggagctgcagcggctaaaggctgaggtaacagaggcagcccggcagcgtagccaggtagaggaggagctcttctctgtccgcgtgcagatggaggagctgggcaaactcaaggctcgcattgaagctgaaaaccgggcactcatccttcgtgacaaggacaacacacagcgcttcctggaggaggaggccgagaagatgaaacaggtggcagaggaagctgcacggttgagcgtagctgcccaggaggcagcaaggctgcggcagctagccgaggaggacctggcccagcagcgggccctggcggagaagatgctgaaggagaagatgcaggcggtgcaggaagccacaaggctcaaggctgaggctgagctgctgcagcagcagaaggagctggcacaggagcaggcccggcggctgcaggaggacaaggagcaaatggctcagcagttggtagaggagacacagggtttccagcggaccctggaggctgagcggcagcggcagctagaaatgagcgcagaggctgaacgcctcaagttgcgcatggctgagatgagccgggctcaggcccgtgcagaggaggatgcccagcgcttccggaagcaggctgaagagatcggcgaaaagctgcaccgcactgaactcgctacacaggagaaggtgacattggtgcagactctcgagatccagcgacagcagagtgaccaagatgccgagcgtctgagggaggccattgctgagctggagcgtgagaaggagaagctcaagcaggaggcgaagttactgcagctcaagtctgaggagatgcagactgtgcagcaggagcagatactgcaggagacacaggccctgcagaagagctttctctctgagaaggacagcttgctgcaacgcgaacgcttcatcgagcaggagaaggccaagctggagcagcttttccaggacgaggtggcaaaagcaaaacagctgcaggaggagcagcagcggcagcagcagcagatggagcaggaaaagcaggagctggtggccagcatggaggaggcccggaggcggcagcgtgaggcagaggagggtgtgaggcgcaagcaagaggaactgcagcgtctggagcagcagcggcagcagcaggagaaactactggcagaggagaaccagaggctgcgggagcggctgcagcgcctggaggaagagcaccgagctgcgttggcgcactctgaggagatcgccacctcccaggctgctgccacaaaagcactgcccaatggccgcgacgcacttgatggcccctccatggaggccgagcccgagtacaccttcgagggattacgtcagaaggtgccagctcagcagctacaggaagcaggcattctgagcatggaggaactgcagcgtttgacacagggtcacaccacggtggctgagctcacgcagcgggaagatgtgcaccgatacctgaagggcggcagcagcatcgcaggattgctcctgaagcccaccaatgagaaactgagtgtctacacagccctacagcggcagctgctcagccctggaacagcccttatcttgcttgaggcccaggcagcctcgggcttcctgctggaccctgtgcggaaccggcggctgacggtcaatgaggctgtgaaggagggtgtggtgggtcccgagctgcaccacaagctgctgtcagctgagcgtgccgtcactggctacaaggacccttacacaggagaacagatctctctcttccaggccatgaagaaggacctcattgtcagggaccatggcatccgcctgctggaagcccagatcgccacaggtggcatcattgaccctgtacacagccaccgtgttcccgtggacgtggcctaccagcgtggctacttcgatgaggagatgaaccgtgtgctggctgacccaagcgatgacaccaagggcttctttgaccccaacactcacgagaacctcacgtacctgcagctgctggagcgctgtgtggaggaccccgagacaggcctgcgcctcctgccactcacagacaaggctgccaagggtggtgagctggtgtacactgacacggaggcccgtgacgtcttcgaaaaggccacagtgtctgcaccattcggcaagttccagggcaagaccgtgaccatctgggagatcatcaactcagagtacttcacagcggagcagcgacgggacctgctccggcagttccgcacgggccgcatcacggtggagaagatcatcaagattgtcatcacggtggtagaggaacacgagcggaagggccagctctgctttgagggcctccgtgcccttgtgcctgctgcagagctgctggacagtggagtcatcagtcatgaagtctaccagcagctgcagcggggtgagcgctctgtgcgggaagtggccgaggcagacgaggtgaggcaggccctgcggggtaccagtgtcattgccggtgtgtggctggaagaagcagggcagaagctgagcatctatgaggccctgaggagagatttgctgcagccagaggtggctgtggccttgctggaggcccaggctggcactgggcacatcattgaccctgccacgagtgccaggctgactgtggatgaggcagtgcgtgctggcctggtgggtcctgagatgcacgagaagctcttgtcagctgagaaggctgtaacaggctatagggatccctactcgggacagagcgtctcgctcttccaggctctgaagaagggtctcatcccccgagaacagggcctgcgcctgctggatgcccagttatccactggtggcattgtagaccccagcaaaagccaccgtgtgcccctggatgttgcctatgcccggggctacctggacaaagagactaacagggccctgacgtcacccagagacgatgccagagtctaccttgaccccagcacccgggagccagtcacctacagccagctccaacagcggtgccggtctgaccagctgactgggttgagcctactgcccctctcagagaaggccgtccgggcccggcaggaagaggtctactctgagctccaggcccgtgagacattggagaaggccaaggtggaggttcctgtgggcggctttaagggcagggcgctgacagtgtgggagctcataagctcggaatacttcactgaggagcagcggcaggagctgctacggcagttccgcacaggcaaggtcactgtagagaaggtcatcaagattcttatcaccattgtggaggaggtggagactcaacggcaggagagactgtccttcagtggcctccgtgcccctgtgccggccagtgagctcctggcctccaagatcctcagcagaactcagtttgagcagctcaaggatggcaagacatcagtcaaagatctgtcagaggtgggctctgtgcggacactgctgcaaggcagcggctgcctggctggcatctatctggaggactcgaaggagaaagtaaccatctatgaggccatgcgccggggcctcctcagacccagcacagccacactcctgctggaggcccaggcggccactggttttctagtggaccctgtgcggaaccaacgtctgtacgtccatgaagctgtcaaggctggagtggtgggcccggagctccatgagaagctgctgtcggctgagaaggcggtcactggttacaaagatccctactctggcagcaccatctcgctgttccaggccatgaagaagggcttggtcctcagggaccatgccatccgcctgctggaggcccagattgccacaggtggcatcattgaccctgtgcacagtcaccgcctgcccgtagatgttgcctaccagcgtggctacttcgatgaggagatgaaccgtgtgctggctgacccaagtgatgacaccaagggcttcttcgaccccaacacccacgagaacctcacgtacctgcagctactggagcgctgcgtggaggaccccgagacaggcctgcgcctcctgccactcagaggggcagagaagacagaggtggtagaaaccacacaggtgtatactgaggaggagactcggagggcattcgaggagacgcagattgacatcccaggtggtggcagccacggtggctcctccatgtctctatgggaggtgatgcagtcagacatgatcccagaggaccagcgtgcccggctcatggccgactttcaggctggcagagtgaccaaggagcgcatgatcattatcatcatcgaaatcattgagaagacggagatcatccgccagcagaacctcgcctcctatgactacgtacgccgccgcctcaccgccgaagacctgtatgaggcccggatcatctcccttgagacctacaacctcttccgggaaggcaccaagagcctccgtgaggttctggagatggaatctgcctggcgctacctttacggcacaggatcggtggccggtgtctacctgcctggctctaggcagacgctaaccatctaccaggcccttaagaaggggctgctgagtgccgaggtggcccgcttgctgctggaagcacaggcagccacaggctttctgctggacccagtgaaaggcgagaggctgactgtggacgaggccgtgcggaagggtctggtaggccccgagctgcacgatcggctcctctctgccgagcgagctgtaactggctaccgagacccctacaccgaacagcccatctcactcttccaggccatgaagaaggagctgatccctgccgaggaggcactgaggctgctggatgctcagctagccacaggaggcattgtggacccccgcctgggtttccacctccccctggaggtggcttaccaacgaggctacctcaataaggacacgcatgaccagttgtcagagcccagtgaggtgcgcagctatgtggacccctccacggatgagcgtctcagctacacacagctgctcaagcgttgccgccgtgacgacaacagcggccagatgctgctgccgctctctgatgcccgcaagctgaccttccgcggcctgcgcaagcagatcaccgtggaggagctggtacgctctcaggtcatggatgaggccacagcactgcagctgcaagaaggcctgacctccattgaggaggtcactaagaacctgcagaagttccttgagggtaccagctgcattgctggagtctttgttgatgctaccaaggaacggctgtcggtgtaccaggccatgaagaagggcatcatccgtcccgggacagccttcgagctcctggaagcgcaggcagccaccggctacgtcattgaccctatcaaggggctcaagctgactgtggaagaggccgtgcgcatgggtatcgtgggccccgagttcaaggacaagctgctgtctgctgagcgtgcggtcactggctacaaggacccttactctgggaaactcatctctctcttccaggccatgaagaagggcctgatcctgaaggaccatggcatccgcctgctagaggctcagatcgccaccggtggcatcattgaccctgaggagagccaccgcctgcctgtggaagtggcctataagcgtggtctctttgatgaggagatgaacgagatcctgactgacccctcagatgacaccaagggcttcttcgaccccaacaccgaggagaacctcacatacctgcagctgatggagcgctgtatcactgacccccagactggcctgtgtctcctgccgctgaaggaaaagaagcgggagcggaagacgtcctccaagtcctcagtgcgcaagcgccgcgtggtgattgtggaccctgagacgggcaaggagatgtcagtgtatgaggcctaccgcaagggcctcatagaccaccagacatacctggagttgtcagagcaggagtgcgagtgggaagaaatcaccatctcttcctcggacggcgtcgtcaaatctatgatcatcgaccgccgctctggccgccagtatgacattgatgacgccatcaccaagaacctcattgaccgctcagcactggaccagtaccgcgctggcacactttctatcaccgagtttgccgacatgctctcaggcaacgctggtggcttccgctcccgctcctcctctgtgggctcatcttcctcctaccccatcagttctgctgtccctaggacccagctagcctcctggtctgatcctactgaggagactggcccagtggccggcatcctagacacagagactctggagaaggtgtccatcacagaggccatgcaccgcaacctggtagacaacatcactggccagcggttgctggaggcacaggcctgcaccgggggcatcattgaccccagcactggtgagcgcttcccggtcactgaggctgtcaacaagggcctggtggacaagatcatggtagaccgtatcaatctggcccagaaggccttctgtgggtttgaggacccacgcaccaagaccaagatgtcagctgcccaggccctgaagaagggctggctttactacgaggcaggccagcgtttcctcgaggtgcagtacctgacgggtggtctgattgagcctgacacacctggccgtgtgtctcttgatgaagccttgcaacgtggcactgtggatgcccgcacagcccagaagcttcgtgatgtcagtgcctactccaagtacctcacgtgccccaagaccaagctcaagatctcttacaaggacgctctggatcggagcatggtggaggagggcacagggctgaggctgctggaagccgcggcacagtccagcaagggctactacagcccgtacagtgtcagtggctctggctctactgctggttcacgcactggttcacgcaccggctccagggccggctcccgtcgtggcagctttgatgccactggctctggcttctccatgaccttttcttcttcctcctactcttcctcaggctatggccgccgctatgcctcagggccttcagcctctcttgggggccctgagtctgcagtggcctgatcccccagcctgtatcctgccttcccgctctgcatgtcgccaggctccccgtggaggcgctggggtcttttctttcttcttcttttttttttttttttttttttttttttaacatttaaaggtgtcttcctcccaagcggtgcctaaaatctaaccaaaaagaccagactaacacattaatatatatatatatatgcgatgtccagacagcctgtgtcttgggaaacagggctggcccaggcccagtgaccactccactctccttgggcctccctaatcctttctacctgccactcaccacagctaggtgccttggagaatccagagctgggcactcagcccactactcctgtctctcctgggaggattgccatctgggaaaggcccccagacctctaagccaaccccactggatgtctacctgctggtcctagctgctgaggggaactggggacggtcctgtgagcagacagctgttgagtctcttgaggcctctgccctgagccagctgcttctccccagtgtatacctgaatattcagtgggttttgctggcaaaggaaagatcccaggccaaccatctcttccagcctgcccagagaagccccttccccatgggaagataaggcctggtcctggccccagcctcccgcctggctcctgcagctgccattggagctgtgctttgtagctcactaccccatacttattcccttgagacctgagcctctgcttcagccttccagcctcaactccccttgtaagtgccttctgtgtccttgtacccaggccctaaagacccagacccagggcaagagatggacattctggctgggcggggctggagggttctgcagatctgagaattcttctccagaggcccaggggctcttcaagcctgtggaacccctctgggtgctgctgcccaccccactcccagggagccctggccagcccagctgtgctaacataagtacttggccagttacactctcccttccctggccttggtggctcctacccctgcctccaccctctgagtgagctttgcatgttccactaaccttgagctggtgacaggtggagatgccaggcagaacactaacctgaccatgggcgggggccctgcggtgtccgcccctcaataaaagcaattccaaccttca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]