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2024-04-29 08:15:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_017595088           15081 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus plectin (Plec), transcript variant X8,
            mRNA.
ACCESSION   XM_017595088
VERSION     XM_017595088.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017595088.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15081
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..15081
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="plectin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 65 ESTs, 42 long
                     SRA reads, 8 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 15 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:64204"
                     /db_xref="RGD:621649"
     CDS             144..13916
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /codon_start=1
                     /product="plectin isoform X6"
                     /protein_id="XP_017450577.1"
                     /db_xref="GeneID:64204"
                     /db_xref="RGD:621649"
                     /translation="
MSGEDSEVRPVAVAEGSSNGSSGSPSPGDTLPWNLGKTQRSRRSGGGSVGNGSVLDPAERAVIRIADERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPRERDVIRSVRLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVPGAQDGVRANELQLRWQEYRELVLLLLQWIRHHTAAFEERKFPSSFEEIEILWCQFLKFKETELPAKEADKNRSKGIYQSLEGAVQAGQLKIPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLECLQRIVSKLQMEAGLCEEQLNQADSLLQSDIRLLASGKAAQRAGEVERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHERLVAIRTEYNLRLKAGVGAPVTQVTLQSTQRRPELEDSTLRYLHDLLAWVEENQRRIDGAEWGVDLPSVEAQLGSHRGMHQSIEEFRAKIERARNDESQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHGFVAAATKELMWLNEKEEEEVGFDWSDRNTNMAAKKESYSALMRELEMKEKKIKEIQNTGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENTAYFQFFSDVREAEEQLQKLQETLRRKYSCDRSITVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAIVQLKPRNPAHPVRGHVPLLAVCDYKQVEVTVHKGDQCQLVGPAQPFHWKVLGGSSSEAAVPSVCFLVPPPNQEAQEAVARLEAQHQALVTLWHQLHVDMKSLLAWQSLNRDIQLIRSWSLVTFRTLKPEEQRQALRNLELHYQAFLRDSQDAGGFGPEDRLVAEREYGSCSRHYQQLLQSLEQGEQEESRCQRCISELKDIRLQLEACETRTVHRLRLPLDKDPARECAQRIAEQQKAQAEVEGLGKGVARLSAEAEKVLALPEPSPAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRSTQGAEEVLKTHEEHLKEAQAVPATLQELEVTKASLKKLRAQAEAQQPVFNTLRDELRGAQEVGERLQQRHGERDVEVERWRERVTQLLERWQAVLAQTDVRQRELEQLGRQLRYYRESADPLSSWLQDAKSRQEQIQAVPIANSQAAREQLRQEKALLEEIERHGEKVEECQKFAKQYINAIKDYELQLITYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTRYSELTTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAELEARELQRRMQEEVTRREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQVEAAERSRMRIEEEIRVVRLQLETTERQRGGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREKQRALQALDELKLQAEEAERRLRQAEAERARQVQVALETAQRSAEVELQSKRASFAEKTAQLERTLQEEHVTVTQLREEAERRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQKSLAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQHEATAATQKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAERVLTEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEIMALKASFEKAAAGKAELELELGRIRSNAEDTMRSKELAEQEAARQRQLAAEEEQRRREAEERVQRSLAAEEEAARQRKVALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREEELQQTLQQEQNMLERLRSEAEAARRAAEEAEEAREQAEREAAQSRKQVEEAERLKQSAEEQAQAQAQAQAAAEKLRKEAEQEAARRAQAEQAALKQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEETDHQKSILDEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKARIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLVEETQGFQRTLEAERQRQLEMSAEAERLKLRMAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVTLVQTLEIQRQQSDQDAERLREAIAELEREKEKLKQEAKLLQLKSEEMQTVQQEQILQETQALQKSFLSEKDSLLQRERFIEQEKAKLEQLFQDEVAKAKQLQEEQQRQQQQMEQEKQELVASMEEARRRQREAEEGVRRKQEELQRLEQQRQQQEKLLAEENQRLRERLQRLEEEHRAALAHSEEIATSQAAATKALPNGRDALDGPSMEAEPEYTFEGLRQKVPAQQLQEAGILSMEELQRLTQGHTTVAELTQREDVHRYLKGGSSIAGLLLKPTNEKLSVYTALQRQLLSPGTALILLEAQAASGFLLDPVRNRRLTVNEAVKEGVVGPELHHKLLSAERAVTGYKDPYTGEQISLFQAMKKDLIVRDHGIRLLEAQIATGGIIDPVHSHRVPVDVAYQRGYFDEEMNRVLADPSDDTKGFFDPNTHENLTYLQLLERCVEDPETGLRLLPLTDKAAKGGELVYTDTEARDVFEKATVSAPFGKFQGKTVTIWEIINSEYFTAEQRRDLLRQFRTGRITVEKIIKIVITVVEEHERKGQLCFEGLRALVPAAELLDSGVISHEVYQQLQRGERSVREVAEADEVRQALRGTSVIAGVWLEEAGQKLSIYEALRRDLLQPEVAVALLEAQAGTGHIIDPATSARLTVDEAVRAGLVGPEMHEKLLSAEKAVTGYRDPYSGQSVSLFQALKKGLIPREQGLRLLDAQLSTGGIVDPSKSHRVPLDVAYARGYLDKETNRALTSPRDDARVYLDPSTREPVTYSQLQQRCRSDQLTGLSLLPLSEKAVRARQEEVYSELQARETLEKAKVEVPVGGFKGRALTVWELISSEYFTEEQRQELLRQFRTGKVTVEKVIKILITIVEEVETQRQERLSFSGLRAPVPASELLASKILSRTQFEQLKDGKTSVKDLSEVGSVRTLLQGSGCLAGIYLEDSKEKVTIYEAMRRGLLRPSTATLLLEAQAATGFLVDPVRNQRLYVHEAVKAGVVGPELHEKLLSAEKAVTGYKDPYSGSTISLFQAMKKGLVLRDHAIRLLEAQIATGGIIDPVHSHRLPVDVAYQRGYFDEEMNRVLADPSDDTKGFFDPNTHENLTYLQLLERCVEDPETGLRLLPLRGAEKTEVVETTQVYTEEETRRAFEETQIDIPGGGSHGGSSMSLWEVMQSDMIPEDQRARLMADFQAGRVTKERMIIIIIEIIEKTEIIRQQNLASYDYVRRRLTAEDLYEARIISLETYNLFREGTKSLREVLEMESAWRYLYGTGSVAGVYLPGSRQTLTIYQALKKGLLSAEVARLLLEAQAATGFLLDPVKGERLTVDEAVRKGLVGPELHDRLLSAERAVTGYRDPYTEQPISLFQAMKKELIPAEEALRLLDAQLATGGIVDPRLGFHLPLEVAYQRGYLNKDTHDQLSEPSEVRSYVDPSTDERLSYTQLLKRCRRDDNSGQMLLPLSDARKLTFRGLRKQITVEELVRSQVMDEATALQLQEGLTSIEEVTKNLQKFLEGTSCIAGVFVDATKERLSVYQAMKKGIIRPGTAFELLEAQAATGYVIDPIKGLKLTVEEAVRMGIVGPEFKDKLLSAERAVTGYKDPYSGKLISLFQAMKKGLILKDHGIRLLEAQIATGGIIDPEESHRLPVEVAYKRGLFDEEMNEILTDPSDDTKGFFDPNTEENLTYLQLMERCITDPQTGLCLLPLKEKKRERKTSSKSSVRKRRVVIVDPETGKEMSVYEAYRKGLIDHQTYLELSEQECEWEEITISSSDGVVKSMIIDRRSGRQYDIDDAITKNLIDRSALDQYRAGTLSITEFADMLSGNAGGFRSRSSSVGSSSSYPISSAVPRTQLASWSDPTEETGPVAGILDTETLEKVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPSTGERFPVTEAVNKGLVDKIMVDRINLAQKAFCGFEDPRTKTKMSAAQALKKGWLYYEAGQRFLEVQYLTGGLIEPDTPGRVSLDEALQRGTVDARTAQKLRDVSAYSKYLTCPKTKLKISYKDALDRSMVEEGTGLRLLEAAAQSSKGYYSPYSVSGSGSTAGSRTGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSGYGRRYASGPSASLGGPESAVA"
     misc_feature    351..716
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="first calponin homology (CH) domain found in the
                     plectin/dystonin/MACF1 family; Region: CH_PLEC-like_rpt1;
                     cd21188"
                     /db_xref="CDD:409037"
     misc_feature    order(360..362,372..374,573..575,579..584,591..596,
                     600..602,627..653,666..668,672..677,681..686,693..698,
                     705..707)
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="putative actin binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:409037"
     misc_feature    753..1070
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="second calponin homology (CH) domain found in
                     plectin and similar proteins; Region: CH_PLEC_rpt2;
                     cd21238"
                     /db_xref="CDD:409087"
     misc_feature    order(759..761,771..773,921..923,927..932,939..944,
                     948..950,975..1001,1020..1022,1026..1031,1035..1040,
                     1047..1052,1059..1061)
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="putative actin binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:409087"
     misc_feature    order(843..845,852..854,912..923,927..932)
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:409087"
     misc_feature    2124..2660
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; Region: SPEC;
                     cd00176"
                     /db_xref="CDD:238103"
     misc_feature    2433..2450
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     misc_feature    2649..2849
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="SH3 domain; Region: SH3_10; pfam17902"
                     /db_xref="CDD:407754"
     misc_feature    2952..3185
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Spectrin like domain; Region: Spectrin_like;
                     pfam18373"
                     /db_xref="CDD:436447"
     misc_feature    <3348..4958
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="DNA repair exonuclease SbcCD ATPase subunit
                     [Replication, recombination and repair]; Region: SbcC;
                     COG0419"
                     /db_xref="CDD:223496"
     misc_feature    <4305..6425
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    <5436..7979
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    8343..8459
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: Plectin; pfam00681"
                     /db_xref="CDD:425816"
     misc_feature    8457..8573
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: Plectin; pfam00681"
                     /db_xref="CDD:425816"
     misc_feature    8568..8678
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: PLEC; smart00250"
                     /db_xref="CDD:197605"
     misc_feature    8685..8801
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: Plectin; pfam00681"
                     /db_xref="CDD:425816"
     misc_feature    9321..9434
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: PLEC; smart00250"
                     /db_xref="CDD:197605"
     misc_feature    9441..9557
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: Plectin; pfam00681"
                     /db_xref="CDD:425816"
     misc_feature    9552..9662
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: PLEC; smart00250"
                     /db_xref="CDD:197605"
     misc_feature    9669..9785
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: Plectin; pfam00681"
                     /db_xref="CDD:425816"
     misc_feature    10320..10436
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: Plectin; pfam00681"
                     /db_xref="CDD:425816"
     misc_feature    10434..10550
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: Plectin; pfam00681"
                     /db_xref="CDD:425816"
     misc_feature    10545..10640
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: PLEC; smart00250"
                     /db_xref="CDD:197605"
     misc_feature    10662..10778
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: Plectin; pfam00681"
                     /db_xref="CDD:425816"
     misc_feature    11322..11432
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: PLEC; smart00250"
                     /db_xref="CDD:197605"
     misc_feature    11439..11555
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: Plectin; pfam00681"
                     /db_xref="CDD:425816"
     misc_feature    11550..11660
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: PLEC; smart00250"
                     /db_xref="CDD:197605"
     misc_feature    11667..11783
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: Plectin; pfam00681"
                     /db_xref="CDD:425816"
     misc_feature    12048..12161
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: PLEC; smart00250"
                     /db_xref="CDD:197605"
     misc_feature    12168..12284
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: Plectin; pfam00681"
                     /db_xref="CDD:425816"
     misc_feature    12396..12512
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: Plectin; pfam00681"
                     /db_xref="CDD:425816"
     misc_feature    <12699..12785
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: Plectin; pfam00681"
                     /db_xref="CDD:425816"
     misc_feature    13095..13196
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: PLEC; smart00250"
                     /db_xref="CDD:197605"
     misc_feature    13203..13319
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: Plectin; pfam00681"
                     /db_xref="CDD:425816"
     misc_feature    13431..13547
                     /gene="Plec"
                     /gene_synonym="Pcn; Plec1; Pltn"
                     /note="Plectin repeat; Region: Plectin; pfam00681"
                     /db_xref="CDD:425816"
ORIGIN      
cttggttggaccgcgccctagcggggctctgtctttgaataaacctgtatttgaaaccagttagatagaaggactggctggaactcggaatccgacctgtttggagagtgggggctacccacgtggctggggaccaggaggccatgtcaggggaggactccgaggtacggccagtggcagtggctgaaggtagttccaatggaagcagtggttcacccagccccggggacacactgccctggaaccttgggaaaacacagagaagccggcggagtggaggtggttctgtgggcaatgggagcgtcttggatcctgcagagcgggccgtcatccgcattgcagatgaacgagaccgtgtgcagaagaaaactttcaccaagtgggtcaataaacaccttatcaagcactggagggcagaggctcaaaggcacatcagtgacctgtatgaagacctccgtgatggccacaacctcatctccctgctggaagtcctctcaggagacagcctgccgagggagcgggacgtaatcaggagtgtacgcctgccccgagagaaggggaggatgcgtttccacaagctgcaaaacgttcagattgccctggactatctccgacatcggcaggtgaagttggtgaacatcagaaatgatgacatcgccgatggcaaccccaagctgaccctgggcctgatctggacaatcatcctgcacttccagatctcagacattcaggtgagcggccagtccgaggacatgacagccaaggagaagctgctgctgtggtctcagcgtatggtagagggctaccaaggcctgcgctgtgacaacttcaccaccagctggcgcgacggccggctcttcaatgctatcatccacaggcacaagcccatgctcatagacatgaataaagtgtaccgacagaccaacctggagaacctagaccaggccttctccgtggcagagcgggacctgggagttaccaggctcctggacccagaagatgtggatgtccctcagcctgatgagaagtccatcatcacctacgtttcatccctgtatgatgccatgccccgtgtgccgggcgcacaggatggagtgagggccaatgagctgcagcttcgttggcaagagtaccgggagcttgtgctgctgctgctacagtggatccggcaccacaccgctgcttttgaggagcgcaagttcccctccagctttgaggagattgagatcctatggtgccagtttctgaagttcaaggagacagaacttcctgccaaggaggcagacaagaaccggtccaaaggcatctaccagtctttggagggagcagtacaagcaggccagctcaagattccccctggctaccacccgctagacgtggaaaaggagtggggcaagctgcacgtggccatcctggagcgggagaagcaactccggagcgagtttgagaggctggagtgtcttcagcgcattgtgagcaagctacagatggaggctgggctatgtgaggagcagctgaaccaggccgattccctactgcagtcggatattcggctgctggcctcaggcaaggcggcacagcgggctggggaagtggagagagacctggacaaggctgatggtatgatccggctgttgttcaatgatgtgcagacccttaaagatgggcggcatccacagggtgaacagatgtaccggagggtgtatcgtctgcatgagcgcctggtagccatccgcactgaatacaacctccggctgaaggcaggggtgggtgcccctgtgacccaggtgaccctgcagagcacacagaggcgcccagagctagaggactccacactgcgttacctgcacgacctgctggcatgggtggaggagaaccagcgtcgaatagacggtgctgagtggggcgtggacttgcccagtgtagaggcacagctgggcagccaccgaggcatgcatcagtctattgaggaattccgggccaagatcgagcgggctcggaatgatgagagccagctctcccctgccacccgaggtgcctaccgagactgcctgggccgcctggacctgcagtatgcaaagctgctgaactcctccaaggcccgcctccggtccctggagagcttgcatgggtttgtggcggcagctaccaaggagctgatgtggctgaatgagaaggaagaggaagaagtgggctttgattggagtgaccgcaacaccaacatggctgccaagaaagaaagttactcggccctgatgcgtgagctggagatgaaggaaaagaaaattaaggagatccagaacacgggggacaggttgctgcgggaagaccatcctgcccggcccacagtggagtccttccaggctgccctgcagacacagtggagctggatgctgcagctgtgttgctgcattgaagcgcacttgaaagagaacacagcctacttccagttcttctcagatgttcgggaggctgaggaacagttgcagaaactacaggagacgttacgcaggaagtacagctgtgaccgctccatcactgtcacaaggcttgaggacctgctgcaggatgcccaggatgagaaggagcaactgaatgagtacaaagggcacctctcaggcctggccaagcgggccaaggctattgtgcagctgaagccacgcaaccctgcccaccctgtgcggggtcacgtgcccctgctagctgtgtgtgactacaagcaggtggaggtgactgtgcacaagggtgaccaatgccagctggtgggccctgcccagccgttccactggaaggtgctcggtggttccagcagtgaggctgccgtgccttctgtgtgctttcttgtgccgccacccaaccaggaggcccaggaagctgttgctaggctggaggcccagcatcaggccctggttactctgtggcaccagcttcacgtggacatgaagagtcttctggcatggcagagcctcaatcgtgacatacagctcatccggtcctggtccctagtcacgttccgcacgctgaagcccgaggagcagcggcaagctctgcgcaacctggagttgcactaccaggccttccttcgagacagccaggacgctggtggctttgggcccgaggaccggctggtggcagagcgcgaatatggatcttgtagtcgccactaccagcagctgctacaaagcctggagcagggtgagcaggaggagtctcgctgtcagcgatgcatctcggagctcaaggacattcggctgcaactggaggcctgtgagactcggactgtgcaccgtctgcggctgccactggataaagaccccgcacgggagtgtgcccagcgcatcgctgagcaacagaaagcacaggctgaggtggaggggctgggcaagggagttgcccggctgtctgctgaggctgagaaagttctggccttgccagagccgtcacctgctgcaccaactctgcgctcggagttggaattgaccctgggcaagctggaacaggtcagaagcctgtctgccatctacttggagaaactcaagaccatcagcttggtaattcgcagtacccagggggctgaggaggtgcttaaaacacacgaggagcacctgaaggaggcccaggccgtgcctgccacactccaagagctcgaagtcaccaaggcttcactaaagaagctgcgggcccaggcggaggcacagcagcctgtattcaacaccctacgagatgagctgaggggggcacaggaagttggtgaacggctacagcagcggcatggtgagcgggacgtggaagtagagcgctggcgagaacgtgtcactcagttgctggagcgctggcaggctgtgctagcccagactgatgtgcggcagcgggagcttgaacagctgggccgccaacttcgctactaccgtgaaagtgcggatccgctgagctcctggctgcaggatgccaagagccggcaagagcagatccaggctgtgccaatagccaacagtcaggctgcacgagaacagctgcgccaggagaaggccctgctggaggagattgagcgccatggtgagaaggttgaggagtgccagaagtttgctaagcagtacatcaatgcaatcaaggactatgagctccagctgatcacctacaaggctcagcttgaacctgtggcctcccccgccaagaagcccaaggttcagtctggatcggagagcgtcatccaggagtacgtggatctgcgtacacgctacagtgagctgaccacactcacgagtcagtacatcaagttcatcagtgagacactgcgccgcatggaagaggaagagcggctggctgagcaacagcgggcagaggagcgggagcgcctggccgaggtggaggccgcgctggagaagcagcggcagctggctgaggcccatgcccaggccaaggcacaggccgagctggaggcacgagaactgcagcggcgcatgcaggaggaggtgacgcggcgcgaggaggcggcggtggacgcacagcaacagaagcgcagcatccaagaggagctgcagcatctgcggcaaagctcagaggcagagatccaggccaaggcccagcaggtggaggctgcagagcgcagccgcatgcgcattgaggaagagatccgcgtagtccgtctgcagctagagacaactgagcgtcagcgtggaggggcggaggatgagctgcaggctctgcgtgcacgggctgaggaggcagaagcacagaagcggcaggctcaggaggaagccgagcgcttgcggaggcaggtgcaggatgagagccaacgcaaacggcaggcggaggccgagctggccctgcgtgtgaaggcagaagcggaggcagcgcgagagaagcagcgggccctgcaggctctggatgaactgaaactgcaggccgaggaggccgaacggcggctgcgccaagccgaggcagagagggctcgccaagtgcaggtagccctggagacagcgcagcgtagtgcagaagtg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gatgccaggcagaacactaacctgaccatgggcgggggccctgcggtgtccgcccctcaataaaagcaattccaaccttca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]