2024-05-04 20:21:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008771380 5056 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus Rho guanine nucleotide exchange factor 7 (Arhgef7), transcript variant X2, mRNA. ACCESSION XM_008771380 VERSION XM_008771380.2 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051351.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 21, 2021 this sequence version replaced XM_008771380.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5056 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="16" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..5056 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Rho guanine nucleotide exchange factor 7; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 60 ESTs, 1 long SRA read, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns" /db_xref="GeneID:114559" /db_xref="RGD:620624" CDS 299..3004 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /codon_start=1 /product="rho guanine nucleotide exchange factor 7 isoform X2" /protein_id="XP_008769602.2" /db_xref="GeneID:114559" /db_xref="RGD:620624" /translation="
MKRHLTAGQGAREPAEPSGTCWAGRANRRRAAAHGRGGGGGAGGRGPGRSEVIARGAPSVRAARAAAAMNSAEQTVTWLITLGVLESPKKTISDPEVFLQASLKDGVVLCRLLERLLPGTIEKTFDANDLYQGQNFNKVLSSLVTLNKVTADIGLGSDSVCARPSSHRIKSFDSLGSQSSHSRTSKLLQSQYRSLDMTDNANSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKPSEKPVSPKSGTLKSPPKGFDTTAINKSYYNVVLQNILETEHEYSKELQSVLSTYLWPLQTSEKLSSANTSYLMGNLEEISSFQQVLVQSLEECTKSPEAQQRVGGCFLSLMPQMRTLYLAYCANHPSAVSVLTEHSEDLGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHPDRQDIQKSMTAFKNLSAQCQEVRKRKELELQILTEPIRSWEGDDIKTLGSVTYMSQVTIQCAGSEEKNERYLLLFPNLLLMLSASPRMSGFIYQGKLPTTGMTITKLEDSENHRNAFEISGSMIERILVSCNNQQDLHEWVEHLQRQTKVTSVSNPTIKPHSVPSHTLPSHPLTPSSKHADSKPVALTPAYHTLPHPSHHGTPHTTISWGPLEPPKTPKPWSLSCLRPAPPLRPSAALCYKEDLSRSPKTMKKLLPKRKPERKPSDEEFAVTKSTAALEEDAQILKVIEAYCTSAKTRQTLNSTWQGTDLMHNHVLADDDQSSLDSLGRRSSLSRLEPSDLSEDSEYDSLWTAHSYRMGSASRSRKESAPQVLLPEEEKIIVEETKSNGQTVIEEKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMNDPAWDETNL"
misc_feature 509..760 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="calponin homology (CH) domain superfamily; Region: CH_SF; cl00030" /db_xref="CDD:444660" misc_feature 764..904 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Unstructured region one on RhoGEF 6 and 7; Region: RhoGEF67_u1; pfam16615" /db_xref="CDD:435465" misc_feature 914..1075 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Src Homology 3 domain of beta-Pak Interactive eXchange factor; Region: SH3_betaPIX; cd12061" /db_xref="CDD:212994" misc_feature order(929..931,935..937,944..946,953..958,1001..1003, 1007..1015,1046..1048,1052..1054,1058..1063) /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212994" misc_feature 1166..1699 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160" /db_xref="CDD:238091" misc_feature order(1184..1186,1196..1198,1478..1480,1550..1555, 1562..1567,1571..1576,1583..1588,1595..1600,1607..1609, 1685..1687,1697..1699) /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="GTPase interaction site [polypeptide binding]; other site" /db_xref="CDD:238091" misc_feature 1790..2086 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Cloned out of library/PAK-interactive exchange factor pleckstrin homology (PH) domain; Region: PH_Cool_Pix; cd01225" /db_xref="CDD:269932" misc_feature 2261..2536 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Unstructured region two on RhoGEF 6 and 7; Region: RhoGEF67_u2; pfam16614" /db_xref="CDD:435464" misc_feature 2744..2998 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="betaPIX coiled coil; Region: betaPIX_CC; pfam16523" /db_xref="CDD:435396" ORIGIN
ggcgaggtggcgaagagacgcccgcgccccgcagtcggcgggcaagctcaagagagcattctgggaagcgcttactaatcgcgcgccgccctacccacaaaggcgcgcagccccggggcgcgcgggcggcgcaggtgagcggggggcgcgccagctgtcgtgcgcccgggctggcgcggggtgcgcgcgggcggccgccgcgtctttcttctccggtgatgtcatcgggcgacggcggccgcggccggggggcggcggcgggggcggtgccgggcgcccgcaggttcctgcgccgctaatgaaaaggcacttgacagcgggccagggcgcgcgcgagcccgcggagccgagcgggacctgctgggccggccgggccaatcgccggcgcgcggccgcccatgggcgcggaggcggcgggggcgcgggtggccgcggcccgggccgctccgaggtgatcgcgcgcggcgccccctctgtgcgcgcagcccgagccgccgcagcgatgaattctgccgagcagaccgttacgtggctcatcaccctgggcgtgctggagtcgcccaagaaaaccatttcggacccggaggtcttcttgcaggcgtcgctcaaggacggggtggtcctatgccggctgctggagcgcttgctgcccgggaccatcgagaaaacttttgatgcaaatgatttgtatcaggggcagaactttaacaaggtcctcagctccttggtgacactaaataaagtgacagcagacattggactaggaagtgattctgtgtgtgcccggccctcgtcacataggataaagtcttttgattccctgggatcccagtcttcacacagtaggacttcaaaattgctgcagagccagtaccgaagcttggacatgactgataacgccaacagccaactggtagtacgagccaagtttaacttccagcagaccaatgaagatgagctctccttctcgaagggtgacgtcatccatgtcactcgagtggaggaaggaggctggtgggaaggcacacacaatggcaggaccggctggttccccagcaactacgtacgagagatcaagccaagtgagaagcctgtgtcacccaaatcagggaccttgaagagccctcccaaagggttcgatacgactgccatcaacaagagctattacaatgtggtgctacagaacatcctggaaacagagcatgagtattccaaggagctgcagtctgtgctgtcaacctacctgtggccgctgcagaccagcgagaagttgagttcagcaaacacttcatatttaatgggaaatctagaggaaatatcttccttccagcaagtgcttgtacagtccctagaagaatgcacaaagtctcctgaagcccagcagagagtcggtggctgcttcctgagcctgatgccgcagatgaggaccctgtaccttgcctactgtgccaaccacccatctgctgtgagcgtcctcacagagcacagtgaggacctgggagagttcatggagacaaaaggtgccagcagccctgggatcctggtgctgactaccggcctgagcaagcccttcatgcgcctggacaagtaccccacactgctgaaggagctggagagacacatggaggattatcatcctgatagacaagatattcagaaatctatgactgccttcaaaaacctttcagcccagtgtcaagaagtacgaaaaaggaaagagctggagctgcagatcctgacagagcccatcaggagctgggagggggatgacataaagacgttgggcagtgttacatacatgtcccaagtcacaattcagtgtgcaggaagcgaggagaagaatgagaggtacctcctgctcttcccaaaccttctgctcatgttgtctgccagtcccaggatgagcggtttcatctatcagggaaagctgccaacaacaggaatgacaatcacaaaactcgaggacagtgagaaccataggaatgcatttgagatatcagggagcatgatcgagcgcatcctggtgtcctgcaacaaccaacaggacttgcacgaatgggtggagcatctgcagaggcagacgaaggtcacgtctgtgagcaaccccaccatcaagccccactcggtgccatcgcacacacttccttcccatcctctcactccatccagcaaacacgcggacagcaagcctgtggcactgacgcctgcgtaccacacactcccccacccctctcaccatggcaccccacataccaccatcagctggggacccctggagcctccgaagacccccaagccttggagcctgagttgcctgcggcctgcccctcccctccggccctcagctgctctctgctacaaggaggatctcagcaggagtcccaagaccatgaaaaagctgctgccaaaacgcaagcccgagcgcaagccttcagacgaggagttcgctgtgaccaagagcacagccgctctggaggaagacgctcagatcctgaaggttattgaagcttactgcacaagtgcaaagacgaggcagaccctgaactcaacatggcaaggcactgacctgatgcataatcacgtcttggctgatgacgaccaatcaagtctagactccttgggtcgtcgcagtagcctttctcgtttggagccctcagacctctcggaagactctgagtatgacagtctatggacagcccatagttacagaatgggttctgcatcccgttcacgcaaagagtctgctccacaagtgttgcttccagaagaagagaaaattatagtcgaagaaaccaaaagcaacgggcagacagtgatagaggaaaagagcctcgtggataccgtgtacgcactaaaggatgaagtccaagagttacgacaggataacaagaagatgaagaaatccttagaggaggaacagagggcccgcaaggacctagagaagctggtgaggaaggttctaaagaacatgaacgaccctgcttgggatgagaccaatctataggctgacttcattctcataggctgaagaccagcagctcctggacaaggctggggcccttggtccccagcacagtgacattcaggactaaggaggtggtcttcaaaaggcaagcagcagtgatgagctgttgctgaagtagctacatgtgagttctagacaccgaggcctgggctgagtgagcacctcgctgtacacctctccctgcagtgactgaccagagtcctcggctttgggacttgagttgaatctataaatagcttacctgtgtactccttgtaaatactgagatctgaatgaacatgtacctgagaggtgactaggctaaccctcttgctaggatttccttctcagcctttctggccacagggatctgaagttgtgttcctaaagtgttggaagcagagaggtgaagggatgcccgggcagcatctgactcgtgtgcagtgtaggctccttggtgccatcaggagcaggcactcaggcacagtggatttgtgtgtctcttttaactgcagtattccagtcccgagctacggcagtacccagggcaccatgggttctaggagggtgagactggtgcccgcctctgctgcgctgtcctgcctgggccctgggtcacagtgtggagtagtgggctagcctggtgtatcttggccctgtacatagttgtgttatttattccatattctttagccggtgctgccgggcagggtttggctgcaggccgttttcatccacaacctctgctctgcctttggctgcagccagcgttgtccaggccactgagagccctcttaaccctgagcaagactaaagcaatacacaccgcactggagcagcgcggagagcctcagtgctgtgcccccgccctcccttgctgcctccccaggcccagatgggccctggaaggctggtggcttccaagaggccctgcttctgttgggccaggcttgcccttgatttggcaacagtgacagtgacctcaggagcttagctgtccccttcctttctccaaagaggttgttttgaagtcagagatacttccccatagaaaggtgtttgtctttaaacactgaggagcagtgtggctggggcctcagcatagcctaggttgtgacccagctcctggccgctcgtcctccgtgcaggtttctgagtgggtgtgtggaggccctttgtgctctccttcctccacactctggctgggtgcagcgtctgtcaggatccaccagagcctcccgctcctgttagcattttaccagcccagtctgtgccgggtgagaaaagctgaggtgttctttctctttggtaagccctgcttcccaagcactctccgacccaaaagacactacagcagaggacagtgtgttcgctgtcacagtggacctcacctcaggaacaacgctccttgcaactccactgctggcgactggtgcctggggttgctggacagctcctccgccaagagcaagcgaagaccatctctgacgcggtcctcaccccgccgaggtggctgtgcaggccccaaggacagtttttacagacctgccttaatgattcgcttggagacttccatgagtatccctaccctggacagggtggtagcgttgtgtcagcacgccaccctgtccttctgagatccagtgtcttccaggctctcagggagcgagaatctgcacccggagcagtcctttttaaagctggcacacaccccgttctcctcctgcatctctgcggtggagctctgacacccacagcacagggtgcctctcaccaactccaactcctccgcgctctgtgagggatgagggggattaagccatttcctgtcctctagtgaagcactttccgttctgaaccatgctgctgcgtgcagcctctgaagctccactcttccctcccagttgttgcccacgctccctgtgcacctcatgccaacccctccttccctgcgacactgcaggagccggtgctggcagaccgcaccggtgtgactgctgcagtgtgtgtgctgccccctccaattattaaactccttattttcctatctca
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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