2024-04-26 02:25:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008771376 6031 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus Rho guanine nucleotide exchange factor 7 (Arhgef7), transcript variant X5, mRNA. ACCESSION XM_008771376 VERSION XM_008771376.3 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051351.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 21, 2021 this sequence version replaced XM_008771376.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6031 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="16" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..6031 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Rho guanine nucleotide exchange factor 7; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 59 ESTs, 1 long SRA read, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns" /db_xref="GeneID:114559" /db_xref="RGD:620624" CDS 1571..3979 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /codon_start=1 /product="rho guanine nucleotide exchange factor 7 isoform X5" /protein_id="XP_008769598.2" /db_xref="GeneID:114559" /db_xref="RGD:620624" /translation="
MTGSSHVSHPVVLGFATCCLAIMKTFDANDLYQGQNFNKVLSSLVTLNKVTADIGLGSDSVCARPSSHRIKSFDSLGSQSSHSRTSKLLQSQYRSLDMTDNANSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKPSEKPVSPKSGTLKSPPKGFDTTAINKSYYNVVLQNILETEHEYSKELQSVLSTYLWPLQTSEKLSSANTSYLMGNLEEISSFQQVLVQSLEECTKSPEAQQRVGGCFLSLMPQMRTLYLAYCANHPSAVSVLTEHSEDLGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHPDRQDIQKSMTAFKNLSAQCQEVRKRKELELQILTEPIRSWEGDDIKTLGSVTYMSQVTIQCAGSEEKNERYLLLFPNLLLMLSASPRMSGFIYQGKLPTTGMTITKLEDSENHRNAFEISGSMIERILVSCNNQQDLHEWVEHLQRQTKVTSVSNPTIKPHSVPSHTLPSHPLTPSSKHADSKPVALTPAYHTLPHPSHHGTPHTTISWGPLEPPKTPKPWSLSCLRPAPPLRPSAALCYKEDLSRSPKTMKKLLPKRKPERKPSDEEFAVTKSTAALEEDAQILKVIEAYCTSAKTRQTLNSTWQGTDLMHNHVLADDDQSSLDSLGRRSSLSRLEPSDLSEDSEYDSLWTAHSYRMGSASRSRKESAPQVLLPEEEKIIVEETKSNGQTVIEEKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMNDPAWDETNL"
misc_feature <1622..1735 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="calponin homology (CH) domain superfamily; Region: CH_SF; cl00030" /db_xref="CDD:444660" misc_feature 1739..1879 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Unstructured region one on RhoGEF 6 and 7; Region: RhoGEF67_u1; pfam16615" /db_xref="CDD:435465" misc_feature 1889..2050 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Src Homology 3 domain of beta-Pak Interactive eXchange factor; Region: SH3_betaPIX; cd12061" /db_xref="CDD:212994" misc_feature order(1904..1906,1910..1912,1919..1921,1928..1933, 1976..1978,1982..1990,2021..2023,2027..2029,2033..2038) /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212994" misc_feature 2141..2674 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160" /db_xref="CDD:238091" misc_feature order(2159..2161,2171..2173,2453..2455,2525..2530, 2537..2542,2546..2551,2558..2563,2570..2575,2582..2584, 2660..2662,2672..2674) /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="GTPase interaction site [polypeptide binding]; other site" /db_xref="CDD:238091" misc_feature 2765..3061 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Cloned out of library/PAK-interactive exchange factor pleckstrin homology (PH) domain; Region: PH_Cool_Pix; cd01225" /db_xref="CDD:269932" misc_feature 3236..3511 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="Unstructured region two on RhoGEF 6 and 7; Region: RhoGEF67_u2; pfam16614" /db_xref="CDD:435464" misc_feature 3719..3973 /gene="Arhgef7" /gene_synonym="P85spr; Pak3bp" /note="betaPIX coiled coil; Region: betaPIX_CC; pfam16523" /db_xref="CDD:435396" ORIGIN
ggtgttcccttgtgacccacattcatgcagcaagctgcttctggaagctgacagatgtgacactgtggggctctgctcttcatgccctgagtgtagagagtggctgtgggcacgtgtgcttcctcagctgcccagggctgacaccgtggagaggctcagtataggccagggtagaagagtccacctgggttgtttgtcctcttctgcctcacaatctgtcacctactgaaggacacagtggggtcctctgggtaggaatgctcctcacagcagattagtatcctctgaatgtctgtgaagccttagctgccaacactatataagtactgtgttttagatttgcggtggaaggggacccttgtttgacaagcacttactcaaaatcacctttattttgagtcacagcgtcttgagagtaggagacactatgttaaagttcttttgatctaggtggtctgatgtttctgaaagttttttttgtgtttggagttggaaggtctcaccttgctgactgacactgcttgtgtacaccccctcccccacccccgtctttaagcagaggcttctctgaccacttctggctgtagtagttgtcctgataggaaagttctgggtaagattggtttttagcaactatgctaggtaggcttttgtttgtccttctgttcttttgattgagacaatgttacagtttgttcagaactgtaacattgtatccggggccacaggtgaccaggtaccttcgtgcccgctcacaggatcaccttgatggtgacaatttgttaggcagacactgggcagttgataccaaatttttcctgtttcatgtatttgtaaaagagctaagcctgacactgcatttgcataccattaacaaccataaaataaggagtatgcccaggcagagtactttagagatatagaagaaggtgtggcaggaagtggcattgtagagtcttcggtggcttgaggagccatggtcccaggcttctgctactcctggatagaaggaccgtcatggtaggagatgggcaggcagaccttcctgaagcagatgtacctctggtctgcatggcaacagtggcctactccttccgagtactgtaaaagccaacctccccgccagcctggggggttggcttcttggtgaagcccagagtgtgtctaaggtgtgcattctgtcctagacacctcatggctctgggcgcagtttccacgtgtcactgactggcttgtgagaggtgtttcagggaagctccagggcctctctcctagttcctttggcacgaacactctttgcattaaaggacttttgctttttgttgtctagattgctgtttgggaaagtaatctgttctgctccctggaaaagcagtcctgtctgaacgctctcaggcttagagtgtgccttctggtttgtctcatctcattgttgggtttcctgagcaggaaggtagtgagcggtgggcccactgagttctgacatcatgccgaagcccattcattggcagcagatgcagtcagtcaggtgctctgtggcatccgggtaggagagctatatagtccgggaatgacaggaagctcccatgtttcacatcctgttgttctggggtttgcgacttgctgtcttgccataatgaagacttttgatgcaaatgatttgtatcaggggcagaactttaacaaggtcctcagctccttggtgacactaaataaagtgacagcagacattggactaggaagtgattctgtgtgtgcccggccctcgtcacataggataaagtcttttgattccctgggatcccagtcttcacacagtaggacttcaaaattgctgcagagccagtaccgaagcttggacatgactgataacgccaacagccaactggtagtacgagccaagtttaacttccagcagaccaatgaagatgagctctccttctcgaagggtgacgtcatccatgtcactcgagtggaggaaggaggctggtgggaaggcacacacaatggcaggaccggctggttccccagcaactacgtacgagagatcaagccaagtgagaagcctgtgtcacccaaatcagggaccttgaagagccctcccaaagggttcgatacgactgccatcaacaagagctattacaatgtggtgctacagaacatcctggaaacagagcatgagtattccaaggagctgcagtctgtgctgtcaacctacctgtggccgctgcagaccagcgagaagttgagttcagcaaacacttcatatttaatgggaaatctagaggaaatatcttccttccagcaagtgcttgtacagtccctagaagaatgcacaaagtctcctgaagcccagcagagagtcggtggctgcttcctgagcctgatgccgcagatgaggaccctgtaccttgcctactgtgccaaccacccatctgctgtgagcgtcctcacagagcacagtgaggacctgggagagttcatggagacaaaaggtgccagcagccctgggatcctggtgctgactaccggcctgagcaagcccttcatgcgcctggacaagtaccccacactgctgaaggagctggagagacacatggaggattatcatcctgatagacaagatattcagaaatctatgactgccttcaaaaacctttcagcccagtgtcaagaagtacgaaaaaggaaagagctggagctgcagatcctgacagagcccatcaggagctgggagggggatgacataaagacgttgggcagtgttacatacatgtcccaagtcacaattcagtgtgcaggaagcgaggagaagaatgagaggtacctcctgctcttcccaaaccttctgctcatgttgtctgccagtcccaggatgagcggtttcatctatcagggaaagctgccaacaacaggaatgacaatcacaaaactcgaggacagtgagaaccataggaatgcatttgagatatcagggagcatgatcgagcgcatcctggtgtcctgcaacaaccaacaggacttgcacgaatgggtggagcatctgcagaggcagacgaaggtcacgtctgtgagcaaccccaccatcaagccccactcggtgccatcgcacacacttccttcccatcctctcactccatccagcaaacacgcggacagcaagcctgtggcactgacgcctgcgtaccacacactcccccacccctctcaccatggcaccccacataccaccatcagctggggacccctggagcctccgaagacccccaagccttggagcctgagttgcctgcggcctgcccctcccctccggccctcagctgctctctgctacaaggaggatctcagcaggagtcccaagaccatgaaaaagctgctgccaaaacgcaagcccgagcgcaagccttcagacgaggagttcgctgtgaccaagagcacagccgctctggaggaagacgctcagatcctgaaggttattgaagcttactgcacaagtgcaaagacgaggcagaccctgaactcaacatggcaaggcactgacctgatgcataatcacgtcttggctgatgacgaccaatcaagtctagactccttgggtcgtcgcagtagcctttctcgtttggagccctcagacctctcggaagactctgagtatgacagtctatggacagcccatagttacagaatgggttctgcatcccgttcacgcaaagagtctgctccacaagtgttgcttccagaagaagagaaaattatagtcgaagaaaccaaaagcaacgggcagacagtgatagaggaaaagagcctcgtggataccgtgtacgcactaaaggatgaagtccaagagttacgacaggataacaagaagatgaagaaatccttagaggaggaacagagggcccgcaaggacctagagaagctggtgaggaaggttctaaagaacatgaacgaccctgcttgggatgagaccaatctataggctgacttcattctcataggctgaagaccagcagctcctggacaaggctggggcccttggtccccagcacagtgacattcaggactaaggaggtggtcttcaaaaggcaagcagcagtgatgagctgttgctgaagtagctacatgtgagttctagacaccgaggcctgggctgagtgagcacctcgctgtacacctctccctgcagtgactgaccagagtcctcggctttgggacttgagttgaatctataaatagcttacctgtgtactccttgtaaatactgagatctgaatgaacatgtacctgagaggtgactaggctaaccctcttgctaggatttccttctcagcctttctggccacagggatctgaagttgtgttcctaaagtgttggaagcagagaggtgaagggatgcccgggcagcatctgactcgtgtgcagtgtaggctccttggtgccatcaggagcaggcactcaggcacagtggatttgtgtgtctcttttaactgcagtattccagtcccgagctacggcagtacccagggcaccatgggttctaggagggtgagactggtgcccgcctctgctgcgctgtcctgcctgggccctgggtcacagtgtggagtagtgggctagcctggtgtatcttggccctgtacatagttgtgttatttattccatattctttagccggtgctgccgggcagggtttggctgcaggccgttttcatccacaacctctgctctgcctttggctgcagccagcgttgtccaggccactgagagccctcttaaccctgagcaagactaaagcaatacacaccgcactggagcagcgcggagagcctcagtgctgtgcccccgccctcccttgctgcctccccaggcccagatgggccctggaaggctggtggcttccaagaggccctgcttctgttgggccaggcttgcccttgatttggcaacagtgacagtgacctcaggagcttagctgtccccttcctttctccaaagaggttgttttgaagtcagagatacttccccatagaaaggtgtttgtctttaaacactgaggagcagtgtggctggggcctcagcatagcctaggttgtgacccagctcctggccgctcgtcctccgtgcaggtttctgagtgggtgtgtggaggccctttgtgctctccttcctccacactctggctgggtgcagcgtctgtcaggatccaccagagcctcccgctcctgttagcattttaccagcccagtctgtgccgggtgagaaaagctgaggtgttctttctctttggtaagccctgcttcccaagcactctccgacccaaaagacactacagcagaggacagtgtgttcgctgtcacagtggacctcacctcaggaacaacgctccttgcaactccactgctggcgactggtgcctggggttgctggacagctcctccgccaagagcaagcgaagaccatctctgacgcggtcctcaccccgccgaggtggctgtgcaggccccaaggacagtttttacagacctgccttaatgattcgcttggagacttccatgagtatccctaccctggacagggtggtagcgttgtgtcagcacgccaccctgtccttctgagatccagtgtcttccaggctctcagggagcgagaatctgcacccggagcagtcctttttaaagctggcacacaccccgttctcctcctgcatctctgcggtggagctctgacacccacagcacagggtgcctctcaccaactccaactcctccgcgctctgtgagggatgagggggattaagccatttcctgtcctctagtgaagcactttccgttctgaaccatgctgctgcgtgcagcctctgaagctccactcttccctcccagttgttgcccacgctccctgtgcacctcatgccaacccctccttccctgcgacactgcaggagccggtgctggcagaccgcaccggtgtgactgctgcagtgtgtgtgctgccccctccaattattaaactccttattttcctatctca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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