2024-05-03 08:20:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008767277 2237 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus selenocysteine lyase (Scly), transcript variant X1, mRNA. ACCESSION XM_008767277 VERSION XM_008767277.3 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051344.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 21, 2021 this sequence version replaced XM_008767277.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2237 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="9" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..2237 /gene="Scly" /note="selenocysteine lyase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 198 samples with support for all annotated introns" /db_xref="GeneID:363285" /db_xref="RGD:1359514" CDS 34..1410 /gene="Scly" /codon_start=1 /product="selenocysteine lyase isoform X1" /protein_id="XP_008765499.1" /db_xref="GeneID:363285" /db_xref="RGD:1359514" /translation="
MRIPWEPSTPSESKGCSVLGLPASDQGDGRGAEWRAGQCGEPAQQEGLYGLQCHHTSRARSHPGCDGSHERSLGKPQQLICSRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEGPV"
misc_feature 280..1395 /gene="Scly" /note="Cysteine sulfinate desulfinase/cysteine desulfurase or related enzyme [Amino acid transport and metabolism]; Region: NifS; COG1104" /db_xref="CDD:224029" ORIGIN
ctcgcagattggctgaagcgcgacacgcagccaatgcggataccctgggagccgagcaccccatcggagtctaaggggtgctcagtcttggggttaccggccagcgatcagggagatggacgtggcgcggaatggcgcgcggggcagtgtggagagcccgcccaacaggaaggtctatatggactacaatgccaccacacctctagagcccgaagtcatccaggctgtgacggaagccatgaaagaagcctggggaaaccccagcagctcatatgtagcaggaaggccaaggacattataaacacagctcgggcaagcctggccaagatgatagggggaaagccccaggacatcatcttcacttctgggggcaccgagtccaataatttagtaatccactctacggtgagatgcttccatgagcagcagaccctgcaggggcgcacggttgaccagatcagccctgaggaggggaccaggccccattttatcacttgcacggtggagcatgactccatccggctgcccctggagcacctggtggaagatcaagtggcagaggtcacttttgtcccagtgtcgaaggtaaatgggcaggtagaagttgaggatatcctggccgctgtccgtcccacaacatgccttgtgaccatcatgttggccaataacgagactggtgtcatcatgcccatctctgagatcagtcgtcgcattaaagccctgaaccagatccgggctgcctcggggctaccccgagtcctggtgcacacagacgctgctcaggcactggggaaaaggcgagtggatgtcgaggacctgggcgtggacttcctgaccatcgtggggcataagttctacggccccaggatcggtgctctgtatgtgcgaggggtcggtaaacttacccccctgtaccccatgctgtttggaggtggacaagagcggaatttcaggccagggaccgagaacacgcccatgattgctggccttgggaaggctgcggatctggtgagtgagaactgcgagacttatgaggcccacatgagagacatccgggattacctggaggagaggctggaggctgaatttggtaagagaatccatttgaacagccgctttccaggagtggagaggcttccgaacacctgcaacttttccatccaggggtcccagcttcgagggtacatggtccttgcacagtgccagacactgctggccagcgtgggagcttcatgccactcggatcatgaggaccggccatccccagtgctgctgagctgtggtattcctgtggatgtggcccggaacgcagtccggctcagtgtgggccgcagtaccactagggctgaagtggacctcatcgtgcaggacctgaagcaggccgtgaaccagctggaaggcccggtctagagctagcagccactctctccctcagcggccagctggactttggccactcaatccataggaaaccgcttgtgaaagttcctggcccctaagctgtcccttctcaagagctgcactgagatgactgtcctactatggggtgcaaagtgacagggggctgcccactgcacagtatcccactctagtgcccatgcttataagctcaggacagccgtgtcacataggacgtcccctgtcacctccgacaagccacaggggaataggaatatcccagttatcaggcagcctgacaggaccacccgaccccagaagacactttgatcagaagacaaaacctacgtcttggtctactgtcacttagctgctcatgtgagaataggaagttgatttcgtctccacccatggcctcccgtgtgcacctacagacaacacccctcccccatgctgccctgcccttctcctctgccctcagcctgccactgcccacctgcctccctggcctgatggtccccagacgaggtctcatgccttgttcccagaggtcacagctcaccctgtcttctacacagggatggctgccgggaggctgctgcctgatctttgccaaagtgggaaatccggtcatttctcactcagattcaattttaattttatctgcaaagggttctgtcatcttgaggatgtgtggcacacatcacacccatgtttatataggaaatgtcttcttggaggacacttttagcacgtgggtctgtgggccaaaggatgacgcagcatgtggaaacagttgtcagaagttaaatgaactaatgaaagatgcctgcacttgc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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