2024-05-04 21:35:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008765103 4307 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus phosphatidylinositol-4-phosphate 5-kinase type 1 gamma (Pip5k1c), transcript variant X3, mRNA. ACCESSION XM_008765103 VERSION XM_008765103.3 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051342.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 21, 2021 this sequence version replaced XM_008765103.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4307 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="7" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..4307 /gene="Pip5k1c" /note="phosphatidylinositol-4-phosphate 5-kinase type 1 gamma; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 44 ESTs, 6 long SRA reads, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 67 samples with support for all annotated introns" /db_xref="GeneID:314641" /db_xref="RGD:1309938" CDS 102..2102 /gene="Pip5k1c" /codon_start=1 /product="phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform X3" /protein_id="XP_008763325.1" /db_xref="GeneID:314641" /db_xref="RGD:1309938" /translation="
MELEVPDEAESAEAGAVTAEAAWSAESGAAAGMTQKKAILAEAPLVTGQPGPGHGKKLGHRGVDASGETTYKKTTSSTLKGAIQLGIGYTVGNLSSKPERDVLMQDFYVVESIFFPSEGSNLTPAHHFQDFRFKTYAPVAFRYFRELFGIRPDDYLYSLCNEPLIELSNPGASGSVFYVTSDDEFIIKTVMHKEAEFLQKLLPGYYMNLNQNPRTLLPKFYGLYCVQSGGKNIRVVVMNNVLPRVVKMHLKFDLKGSTYKRRASKKEKEKSLPTYKDLDFMQDMPEGLLLDSDTFGALVKTLQRDCLVLESFKIMDYSLLLGVHNIDQQERERQAEGAQSKADEKRPVAQKALYSTAMESIQGGAARGEAIETDDTMGGIPAVNGRGERLLLHIGIIDILQSYRFIKKLEHTWKALVHDGDTVSVHRPSFYAERFFKFMSSTVFRKSSSLKSSPSKKGRGALLAVKPLGPTAAFSASQIPSEREDVQYDLRGARSYPTLEDEGRPDLLPCTPPSFEEATTASIATTLSSTSLSIPERSPSDTSEQPRYRRRTQSSGQDGRPQEELHAEDLQKITVQVEPVCGVGVVVPKEQGAGVEVPPSGASAAATVEVDAASQASEPASQASDEEDAPSTDIYFPTDERSWVYSPLHYSARPASDGESDTVSPQ"
misc_feature 327..1448 /gene="Pip5k1c" /note="Phosphatidylinositol phosphate kinase (PIPK) catalytic domain found in phosphatidylinositol 4-phosphate 5-kinase type-1 gamma (PIP5K1gamma) and similar proteins; Region: PIPKc_PIP5K1C; cd17308" /db_xref="CDD:340445" misc_feature order(399..416,420..422,528..530,708..710,717..722, 732..737,1011..1013,1020..1022,1032..1034) /gene="Pip5k1c" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:340445" misc_feature order(609..620,624..626,630..632,657..659,663..665, 813..824,858..860,921..923,1059..1061,1290..1295) /gene="Pip5k1c" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:340445" misc_feature order(663..665,1047..1049,1293..1295) /gene="Pip5k1c" /note="catalytic core residues [active]" /db_xref="CDD:340445" ORIGIN
gccctatagtgcgggcggcgcttgttgttcagcggcggcggccgagctcgggtgcatcctcgggcccgccgccgccgccgctgccgccggagcgcgcggccatggagctagaggtgccggacgaggcagagagcgccgaagcaggggccgtgacagcggaggcggcctggtctgcggagagtggggcggcggcaggtatgacccagaagaaggctatccttgcagaggccccgttggtgacagggcagccaggccctggccatgggaagaagctgggccatcgaggcgtggatgcgtctggagagactacgtataagaagaccacctcgtccaccctgaagggtgccatccaactggggattgggtacacggtgggcaacctcagctctaagccagaacgcgatgtgctcatgcaggacttctatgtggtggagagcatcttctttcccagcgaagggagcaaccttacccccgcccaccacttccaggatttccgtttcaagacctatgcacctgttgccttccgttacttccgggagctctttggtatccgtccggacgattacttgtactcactctgcaacgagccactcattgagctgtccaacccgggtgccagtggctccgtcttctacgtcaccagcgatgacgagttcatcattaagactgtcatgcacaaggaggcggagttcctgcagaaactgctgcctggctactatatgaacctcaaccagaacccccggaccttgctgcccaagttctatgggctgtactgtgtgcagtccggcggcaagaacattcgagtggtggtcatgaacaatgtgctgccccgtgtcgtcaagatgcacctcaagttcgacctcaagggctccacgtacaagcgcagggccagcaagaaggagaaggagaagagcctgcccacctacaaggacctggacttcatgcaggacatgccagaggggctgctactggactctgacacctttggcgccctggtcaagacgctgcagcgagactgcctggtgttggagagcttcaagataatggactacagcctgctgctgggtgtgcacaacattgaccagcaggagcgggagcgccaggccgagggcgcccagagcaaggctgacgagaagcggccggtggcccagaaggccctctactccacagccatggagtccattcagggcggagctgcccgtggggaggccattgagacagatgacacgatgggtgggatcccagccgtgaatgggcgtggggagcgcttgctcctacacatcggaatcattgacattctgcagtcctacaggttcatcaagaagttagaacacacctggaaggccctcgtccacgatggggataccgtctcagtccaccggcccagcttctatgccgagcgcttcttcaagttcatgagcagcacggtcttccggaagagttcctccctcaagtcctctccatctaagaaagggcgtggcgccctgctcgcagtcaagcccctggggcccaccgcagccttctcagctagccagatccccagtgagagagaggatgtgcagtacgacctgcggggagcccgcagctaccccacgctggaggatgaaggccggcctgacctcctgccctgcaccccaccgtcctttgaggaagccaccacagcctctatcgccaccaccctgtcatccacctccctctccatcccagagcggtccccttcagacacatcagagcagccccggtacaggcggcgtacgcagtcttcaggccaggatggccggccccaggaggagctgcatgcggaagacctgcagaagataactgtgcaggtggagccagtgtgtggtgtgggggttgtcgtccccaaggagcagggtgcaggagtggaggttcccccatctggggcatcggcagcagccacggtggaagtagacgctgccagccaggcctcagagcccgccagccaagcctctgatgaggaagatgcgccttccacagacatctattttcccaccgacgagaggagctgggtgtactccccgcttcactatagcgcacggcccgcctccgacggcgagagcgacacagtaagtccccagtaacttctatgcagtccccaatctggagcccagcgtccttctgccaccccagccacttcctggaggcgctgccccccactggggctcagagctcagcgacatcaccccgatggccctggcccgaccttgttctctccctccccactgacggacgccattggccaggcccagccccaggataggtcaggcctccatctgctgctacctgtgcctgttggggcggcaagatttggagtgcacattctgtatttattttgggtccacccctcccccccctttttttggacggagagggagcacaggagtgtttttctaggaaaaagacaagacacaaaaaacccaggaagaggctgcagccaccagccttggtggatcaggttctatgtgtctcagtaccctggggacagtggccaggtagctccagtaaaccccacacactccagagctcgttatgactggcagaggagacaggccctggagccgcggcttgccgtcccgggtctgtgttcctgagttgggtcgcctcaacagagcccctccttcacctcaggtttgggacccaagcaaaccaggactagtcatgccctgtggtctttctgcatctgtttactgccactggaaggatgtccctacgcatgtcttgtggctacaatcacctgatgctgactgggaggttccatattgtctgcctctcatccccatgaaaccctgagctggtgctgtgggtcccctcaactcccagggaaatctctgcccccaagaagggcacagccaggcttcaggctgcagagtgagagtttggtccttaccttggttgaagagagtaagaaagggacatcacctcagcaaagccaaccatatctactgaccaccagggagatcgcagcaagcattctccactgggcagaccccagtgtgttgggtgcagtccagctatgctatgcctctgtttcgtggatgttccacccacggtaggcggagtcaagcaggaatgttctgaaagcacgcagccacaggacacaacctttgggtcagcttcatgggcctcttgggttgcaccttcagggacaggggctatctggcttccaaggactgtagcagcctgtggaggcagtgtggagcatgacactgccatcgtggccagaaaaggcatggccagggagaggacccctggagggggagagtaggagagatgggcagatgcctgtccctggacctcacatcagcccccttcctgttgaggaatgcacagtgaacacaccgtggggagctgctgcatgagttaactaaggggttggggcttgcacacaccaggcaagcatgtcacacctgccatccctgaacttggaaagttaaggcaggagggttgtggcaagttccaggctcgcgtgggttagagtaaaacgagaccaaaaggaaaaaaaaaatcacagggctggccctaccactcagtgggcagaactcacccagctgcataaaccctgagttccattccagcaccacagaaaccagattgggaggcacacagctgccatccctcgcttgggaaacaggcagaaagagcaggagtgcaaggccatccttggctgtatccagttgaaggccagcctgggctacatgagactctctcaaaagagaatctgtaaatatcttcgtgaccccacctcccatcctgttctctatgatggccgctatcgccccaccgtggacggtgtgtgaactgtactgtaaaggcctgcctgggggcgcctccaaggctgaagaggtgccctccccggcccgcctctgttctcctcaagccatcccagcaagtcccctgtccagccccacaccaacctcagtgcaatatgcccttcccgtggggtcccctggcacggtactgtctctgcagccccttgtctcttacccctagctcctctctcccagtggttaaaaatcacatcgcacatcctcccccacatcctgtttttattgttgaatccattctgtaaactacaaacctcctgtgtcttactcatcaggaatagggatcccgggtcctcagcccatgtgatctggtgtttgacaatccaagtacagtgtccccttggcaccaaccagtggggcctgtccctccagcgcagccggcaaatgtatgcagcccaggttcccgctccacctgtcacacccctctttttgagatctgtaataaatctctaataagaaaca
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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