2024-05-04 19:41:07, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008765101 4386 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus phosphatidylinositol-4-phosphate 5-kinase type 1 gamma (Pip5k1c), transcript variant X1, mRNA. ACCESSION XM_008765101 VERSION XM_008765101.3 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051342.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 21, 2021 this sequence version replaced XM_008765101.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4386 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="7" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..4386 /gene="Pip5k1c" /note="phosphatidylinositol-4-phosphate 5-kinase type 1 gamma; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 44 ESTs, 6 long SRA reads, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns" /db_xref="GeneID:314641" /db_xref="RGD:1309938" CDS 103..2181 /gene="Pip5k1c" /codon_start=1 /product="phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform X1" /protein_id="XP_008763323.1" /db_xref="GeneID:314641" /db_xref="RGD:1309938" /translation="
MELEVPDEAESAEAGAVTAEAAWSAESGAAAGMTQKKAILAEAPLVTGQPGPGHGKKLGHRGVDASGETTYKKTTSSTLKGAIQLGIGYTVGNLSSKPERDVLMQDFYVVESIFFPSEGSNLTPAHHFQDFRFKTYAPVAFRYFRELFGIRPDDYLYSLCNEPLIELSNPGASGSVFYVTSDDEFIIKTVMHKEAEFLQKLLPGYYMNLNQNPRTLLPKFYGLYCVQSGGKNIRVVVMNNVLPRVVKMHLKFDLKGSTYKRRASKKEKEKSLPTYKDLDFMQDMPEGLLLDSDTFGALVKTLQRDCLVLESFKIMDYSLLLGVHNIDQQERERQAEGAQSKADEKRPVAQKALYSTAMESIQGGAARGEAIETDDTMGGIPAVNGRGERLLLHIGIIDILQSYRFIKKLEHTWKALVHDGDTVSVHRPSFYAERFFKFMSSTVFRKSSSLKSSPSKKGRGALLAVKPLGPTAAFSASQIPSEREDVQYDLRGARSYPTLEDEGRPDLLPCTPPSFEEATTASIATTLSSTSLSIPERSPSDTSEQPRYRRRTQSSGQDGRPQEELHAEDLQKITVQVEPVCGVGVVVPKEQGAGVEVPPSGASAAATVEVDAASQASEPASQASDEEDAPSTDIYFFAHGRYWLFSPRRRQLRAVTPSHTGAPTDERSWVYSPLHYSARPASDGESDTVSPQ"
misc_feature 328..1449 /gene="Pip5k1c" /note="Phosphatidylinositol phosphate kinase (PIPK) catalytic domain found in phosphatidylinositol 4-phosphate 5-kinase type-1 gamma (PIP5K1gamma) and similar proteins; Region: PIPKc_PIP5K1C; cd17308" /db_xref="CDD:340445" misc_feature order(400..417,421..423,529..531,709..711,718..723, 733..738,1012..1014,1021..1023,1033..1035) /gene="Pip5k1c" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:340445" misc_feature order(610..621,625..627,631..633,658..660,664..666, 814..825,859..861,922..924,1060..1062,1291..1296) /gene="Pip5k1c" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:340445" misc_feature order(664..666,1048..1050,1294..1296) /gene="Pip5k1c" /note="catalytic core residues [active]" /db_xref="CDD:340445" ORIGIN
cgccctatagtgcgggcggcgcttgttgttcagcggcggcggccgagctcgggtgcatcctcgggcccgccgccgccgccgctgccgccggagcgcgcggccatggagctagaggtgccggacgaggcagagagcgccgaagcaggggccgtgacagcggaggcggcctggtctgcggagagtggggcggcggcaggtatgacccagaagaaggctatccttgcagaggccccgttggtgacagggcagccaggccctggccatgggaagaagctgggccatcgaggcgtggatgcgtctggagagactacgtataagaagaccacctcgtccaccctgaagggtgccatccaactggggattgggtacacggtgggcaacctcagctctaagccagaacgcgatgtgctcatgcaggacttctatgtggtggagagcatcttctttcccagcgaagggagcaaccttacccccgcccaccacttccaggatttccgtttcaagacctatgcacctgttgccttccgttacttccgggagctctttggtatccgtccggacgattacttgtactcactctgcaacgagccactcattgagctgtccaacccgggtgccagtggctccgtcttctacgtcaccagcgatgacgagttcatcattaagactgtcatgcacaaggaggcggagttcctgcagaaactgctgcctggctactatatgaacctcaaccagaacccccggaccttgctgcccaagttctatgggctgtactgtgtgcagtccggcggcaagaacattcgagtggtggtcatgaacaatgtgctgccccgtgtcgtcaagatgcacctcaagttcgacctcaagggctccacgtacaagcgcagggccagcaagaaggagaaggagaagagcctgcccacctacaaggacctggacttcatgcaggacatgccagaggggctgctactggactctgacacctttggcgccctggtcaagacgctgcagcgagactgcctggtgttggagagcttcaagataatggactacagcctgctgctgggtgtgcacaacattgaccagcaggagcgggagcgccaggccgagggcgcccagagcaaggctgacgagaagcggccggtggcccagaaggccctctactccacagccatggagtccattcagggcggagctgcccgtggggaggccattgagacagatgacacgatgggtgggatcccagccgtgaatgggcgtggggagcgcttgctcctacacatcggaatcattgacattctgcagtcctacaggttcatcaagaagttagaacacacctggaaggccctcgtccacgatggggataccgtctcagtccaccggcccagcttctatgccgagcgcttcttcaagttcatgagcagcacggtcttccggaagagttcctccctcaagtcctctccatctaagaaagggcgtggcgccctgctcgcagtcaagcccctggggcccaccgcagccttctcagctagccagatccccagtgagagagaggatgtgcagtacgacctgcggggagcccgcagctaccccacgctggaggatgaaggccggcctgacctcctgccctgcaccccaccgtcctttgaggaagccaccacagcctctatcgccaccaccctgtcatccacctccctctccatcccagagcggtccccttcagacacatcagagcagccccggtacaggcggcgtacgcagtcttcaggccaggatggccggccccaggaggagctgcatgcggaagacctgcagaagataactgtgcaggtggagccagtgtgtggtgtgggggttgtcgtccccaaggagcagggtgcaggagtggaggttcccccatctggggcatcggcagcagccacggtggaagtagacgctgccagccaggcctcagagcccgccagccaagcctctgatgaggaagatgcgccttccacagacatctattttttcgcccacgggagatactggcttttctctccccgtcgtcgccaactgcgggccgtgacaccaagccacacaggcgctcccaccgacgagaggagctgggtgtactccccgcttcactatagcgcacggcccgcctccgacggcgagagcgacacagtaagtccccagtaacttctatgcagtccccaatctggagcccagcgtccttctgccaccccagccacttcctggaggcgctgccccccactggggctcagagctcagcgacatcaccccgatggccctggcccgaccttgttctctccctccccactgacggacgccattggccaggcccagccccaggataggtcaggcctccatctgctgctacctgtgcctgttggggcggcaagatttggagtgcacattctgtatttattttgggtccacccctcccccccctttttttggacggagagggagcacaggagtgtttttctaggaaaaagacaagacacaaaaaacccaggaagaggctgcagccaccagccttggtggatcaggttctatgtgtctcagtaccctggggacagtggccaggtagctccagtaaaccccacacactccagagctcgttatgactggcagaggagacaggccctggagccgcggcttgccgtcccgggtctgtgttcctgagttgggtcgcctcaacagagcccctccttcacctcaggtttgggacccaagcaaaccaggactagtcatgccctgtggtctttctgcatctgtttactgccactggaaggatgtccctacgcatgtcttgtggctacaatcacctgatgctgactgggaggttccatattgtctgcctctcatccccatgaaaccctgagctggtgctgtgggtcccctcaactcccagggaaatctctgcccccaagaagggcacagccaggcttcaggctgcagagtgagagtttggtccttaccttggttgaagagagtaagaaagggacatcacctcagcaaagccaaccatatctactgaccaccagggagatcgcagcaagcattctccactgggcagaccccagtgtgttgggtgcagtccagctatgctatgcctctgtttcgtggatgttccacccacggtaggcggagtcaagcaggaatgttctgaaagcacgcagccacaggacacaacctttgggtcagcttcatgggcctcttgggttgcaccttcagggacaggggctatctggcttccaaggactgtagcagcctgtggaggcagtgtggagcatgacactgccatcgtggccagaaaaggcatggccagggagaggacccctggagggggagagtaggagagatgggcagatgcctgtccctggacctcacatcagcccccttcctgttgaggaatgcacagtgaacacaccgtggggagctgctgcatgagttaactaaggggttggggcttgcacacaccaggcaagcatgtcacacctgccatccctgaacttggaaagttaaggcaggagggttgtggcaagttccaggctcgcgtgggttagagtaaaacgagaccaaaaggaaaaaaaaaatcacagggctggccctaccactcagtgggcagaactcacccagctgcataaaccctgagttccattccagcaccacagaaaccagattgggaggcacacagctgccatccctcgcttgggaaacaggcagaaagagcaggagtgcaaggccatccttggctgtatccagttgaaggccagcctgggctacatgagactctctcaaaagagaatctgtaaatatcttcgtgaccccacctcccatcctgttctctatgatggccgctatcgccccaccgtggacggtgtgtgaactgtactgtaaaggcctgcctgggggcgcctccaaggctgaagaggtgccctccccggcccgcctctgttctcctcaagccatcccagcaagtcccctgtccagccccacaccaacctcagtgcaatatgcccttcccgtggggtcccctggcacggtactgtctctgcagccccttgtctcttacccctagctcctctctcccagtggttaaaaatcacatcgcacatcctcccccacatcctgtttttattgttgaatccattctgtaaactacaaacctcctgtgtcttactcatcaggaatagggatcccgggtcctcagcccatgtgatctggtgtttgacaatccaagtacagtgtccccttggcaccaaccagtggggcctgtccctccagcgcagccggcaaatgtatgcagcccaggttcccgctccacctgtcacacccctctttttgagatctgtaataaatctctaataagaaaca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]