2024-05-06 11:16:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008761922 3270 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus serine threonine kinase 39 (Stk39), transcript variant X1, mRNA. ACCESSION XM_008761922 VERSION XM_008761922.3 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051338.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 21, 2021 this sequence version replaced XM_008761922.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3270 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="3" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..3270 /gene="Stk39" /gene_synonym="Spak" /note="serine threonine kinase 39; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 49 ESTs, 1 long SRA read, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns" /db_xref="GeneID:54348" /db_xref="RGD:621643" CDS 278..1795 /gene="Stk39" /gene_synonym="Spak" /codon_start=1 /product="STE20/SPS1-related proline-alanine-rich protein kinase isoform X1" /protein_id="XP_008760144.1" /db_xref="GeneID:54348" /db_xref="RGD:621643" /translation="
MVFPLGVPLWRGRPPGLLSSTCSYSTVSWKGSGATAVVQAALCKPRQERVAIKRINLEKCQTSMDELLKEIQAMSQCSHPNVVTYYTSFVVKDELWLVMKLLSGGSMLDIIKYIVNRGEHKNGVLEEAIIATILKEVLEGLDYLHRNGQIHRDLKAGNILLGEDGSVQIADFGVSAFLATGGDVTRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADMWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPTLETGVEDKEMMKKYGKSFRKLLSLCLQKDPSKRPTAAELLKCKFFQKAKNREYLIEKLLTRTPDIAQRAKKVRRVPGSSGHLHKTEDGDWEWSDDEMDEKSEEGKAAASQEKSRRVKEENPEISVNAGGIPEQIQSLSVHDSQGQPNANEDYREGPCAVNLVLRLRNSRKELNDIRFEFTPGRDTADGVSQELFSAGLVDGHDVVIVAANLQKIVDDPKALKTLTFKLASGCDGAEIPDEVKLIGFAQLSVS"
misc_feature 368..1171 /gene="Stk39" /gene_synonym="Spak" /note="Catalytic domain of the Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase; Region: STKc_OSR1_SPAK; cd06610" /db_xref="CDD:270787" misc_feature order(368..379,389..391,428..430,434..436,524..526, 572..583,590..595,602..604,734..736,740..751,755..757, 785..790,797..799,854..865,869..871,953..955,980..982) /gene="Stk39" /gene_synonym="Spak" /note="active site" /db_xref="CDD:270787" misc_feature order(368..379,389..391,428..430,434..436,524..526, 572..583,590..595,602..604,740..742,746..751,755..757, 788..790) /gene="Stk39" /gene_synonym="Spak" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270787" misc_feature order(374..379,734..736,740..748,797..799,854..865, 869..871,953..955,980..982) /gene="Stk39" /gene_synonym="Spak" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270787" misc_feature order(737..742,812..820,857..898,902..910,920..922, 929..934,941..946,953..955,971..973,992..994,1001..1009, 1013..1018,1118..1120,1124..1129,1133..1135) /gene="Stk39" /gene_synonym="Spak" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:270787" misc_feature order(785..826,845..871) /gene="Stk39" /gene_synonym="Spak" /note="activation loop (A-loop); other site" /db_xref="CDD:270787" misc_feature 1511..1684 /gene="Stk39" /gene_synonym="Spak" /note="Oxidative-stress-responsive kinase 1 C-terminal domain; Region: OSR1_C; pfam12202" /db_xref="CDD:432397" ORIGIN
gtctgcagtgtccaggagagagtgtcacgtaccctagagctagaggctgttgtgagctctctgatacgggggctacttttctttgtggtgctaggccaggagccgtggccctgtgcggaggctgagattgacagctacagtggagaccagtgctgtcttttcctggttttatttttacatttctcagagtaagccacttcccctcctatgactcgtgactgattttaattcctccactggtctcttcctccagcctttcacctcgaccagcacagcaatggtgttccctctgggggtccctctgtggcggggaagaccccctggtctgctgtcttccacctgcagttattctacagtgtcctggaagggcagtggagcgaccgccgtggttcaggcagccctgtgcaaacccaggcaagaacgcgtagccataaagcggatcaacttggaaaagtgccagacgagtatggatgaactcttaaaagaaattcaagccatgagccagtgcagccatcccaacgtagtgacttattatacttcctttgtggtcaaagatgaactttggctggtcatgaaattactaagtggaggttccatgttggatatcatcaaatacatcgtcaatcggggagagcataagaatggtgtcctggaagaggcaataatcgcaacaatccttaaggaggttttggaaggattagactatctgcatagaaatggtcagatccatagggatttgaaagctggcaatattcttctgggtgaggatggatcagtacagatagcagattttggagtaagtgcattcttagcaacagggggtgatgtcacaaggaataaagtcagaaaaacatttgttggtaccccatgttggatggcccctgaggtcatggaacaggtgagaggctatgacttcaaggctgacatgtggagttttggaataacagccattgaattagcaacgggagcagcgccttaccacaaataccctccaatgaaagtgctaatgttgactttgcaaaatgacccgcccactttagaaaccggcgtagaggataaagaaatgatgaaaaaatacggcaagtccttcagaaagttactttcactgtgtctccagaaagatccttccaaaaggcccacagcagcagaacttttaaaatgcaaattcttccagaaagccaagaacagagagtacctgatcgagaagttgctgacacgaacaccagacatagcccaaagagccaagaaggtcaggcgagttcctgggtcaagcggtcaccttcacaagactgaagatggcgactgggagtggagtgatgatgagatggatgagaagagtgaggaggggaaagcggctgcctctcaagagaagtcacgaagagtaaaagaagagaacccagagatctcggtgaacgctggtggcatccccgagcaaatacagtccctctccgtgcacgactctcagggccaaccaaatgctaatgaagactacagagaaggtccttgtgcggtcaaccttgttttaagattaagaaactccagaaaggaacttaatgacatacgatttgagtttactccaggaagagatacagcagatggtgtgtctcaggagctcttctctgctggcttggttgacggtcatgatgtagttatagtggctgctaatttacagaagattgtagatgaccccaaagctttaaaaacgttgacatttaagttggcttctggctgtgatggggcggagattcctgacgaagtgaagctgatcgggttcgcccagttgagtgtgagctgatgtatgtcccttgctgtcaccctcatctgtcgtgccctcccccccttccagccccctctttgcctccttcctctcaccccctcactcccaaatcccagcaaataagaagattgtgaagaggctggcttcgatgaagtgggataaaaaaaataataattttaaaaaaaaactccgagcactctgagttctgctttattctccagcaatccacagtgtgagcacaggcaagtgctgcaatagtgcattgctgatttctttccagagagctatttactattcttagcagtcaatttggatagcccttaagtgaggagtctgaaacacactcaggtggtcctatctcttggcaacaaaaggaatcttctaccagaagccttttctcctcttactgttgtatttctgtttaataattaataataattaattgtacatctgacaatactgcctcttttatgttgtcttagaaattaatatacttataaaattaagatttattagccagacttgaattctagttttaaaactgactgtgaattttatttttcatatatttatgctttacacaccttagctatgagggaaaaagttttgattataatgctttccgcggttgatctcttgttatttaaacaaatggtttcaggtcaatctttggagtatttgtagcttctaatttttgaaatgactgaattgaaaatttgaatgctttctcttttggttggtttgcctaaaatccagtccacaatccagtcgtctcttgggagagggaggtgccttgtaaactttcatacttcgaatgtgcctgagactgcttaaccctggactagtctcagatctcaaacccgcactacacatggaggcatacgtttgcttcatctggacatttagaatactgtacctgtgctgccgttctgttagatcgctgactacatccccgtgtctgattcggctctccttaggtgataggattcattgtttgtaaggcgataaacttgaccacaccagaatctgagttttacttgaaactctgcagaatacacagggggtatgaaaaacaaaacaaaacaaaacagaaagatttttttgtgcaatggcaaaaggtaaaaatgctgtaaacgttcgagaataaatatttccaacccaagaacctcctgcttgactatgtattatgaacctaacaaaccttaggattttcaaatttggagtcaaaaccctcaagaaggtggctccggggatggcaccattgctccttacaagctaaccctagatgcggcagctctttaacgtactttaaaaagcaaatatatattactaaggaaagaagttatttataattgccttgtcataatcgttaaggtgttctagaaccatttgcatacaatttaatgtaattccattccattctattgtttacacaattactcaaagatggctgcaaaggtaaaaggaaaaataaaagcgtcttgcacagtgca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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