LOCUS       XM_008761911            3135 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus heterogeneous nuclear
            ribonucleoprotein A3 (Hnrnpa3), transcript variant X1, mRNA.
ACCESSION   XM_008761911
VERSION     XM_008761911.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_008761911.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3135
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3135
                     /gene="Hnrnpa3"
                     /gene_synonym="Hnrpa3; mBx"
                     /note="heterogeneous nuclear ribonucleoprotein A3; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 143 ESTs, 37 long SRA reads, 13 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 216 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:362152"
                     /db_xref="RGD:727807"
     CDS             151..1224
                     /gene="Hnrnpa3"
                     /gene_synonym="Hnrpa3; mBx"
                     /codon_start=1
                     /product="heterogeneous nuclear ribonucleoprotein A3
                     isoform X1"
                     /protein_id="XP_008760133.1"
                     /db_xref="GeneID:362152"
                     /db_xref="RGD:727807"
                     /translation="

MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF"

     misc_feature    181..423
                     /gene="Hnrnpa3"
                     /gene_synonym="Hnrpa3; mBx"
                     /note="RNA recognition motif 1 (RRM1) found in
                     heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3) and
                     similar proteins; Region: RRM1_hnRNPA3; cd12763"
                     /db_xref="CDD:410156"
     misc_feature    order(190..192,196..198,202..207,271..273,277..279,
                     283..285,310..318,322..324,391..393,400..402,406..423)
                     /gene="Hnrnpa3"
                     /gene_synonym="Hnrpa3; mBx"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:410156"
     misc_feature    460..699
                     /gene="Hnrnpa3"
                     /gene_synonym="Hnrpa3; mBx"
                     /note="RNA recognition motif 2 (RRM2) found in
                     heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3) and
                     similar proteins; Region: RRM2_hnRNPA3; cd12582"
                     /db_xref="CDD:409996"
     misc_feature    1078..>1128
                     /gene="Hnrnpa3"
                     /gene_synonym="Hnrpa3; mBx"
                     /note="Nuclear factor hnRNPA1; Region: HnRNPA1; pfam11627"
                     /db_xref="CDD:431967"
ORIGIN      

cccactggtccagtcgcgctccgctttggcgtgaccccgcccccgatgggcgggcggcgcgcggatagaacatcacgtggttactagccccgcctcttcctctcggtcccatattgaactcgagttggaagaggcgagtccggtctcaaaatggagggccacgatccaaaggaaccagagcagctgaggaagctgtttattggtggtctgagctttgaaaccacagatgatagcttaagagaacattttgagaaatggggcacacttacagattgtgtggtaatgagagatcctcaaacaaaacgttccagaggctttggttttgtgacctactcttgtgtcgaagaggtggatgctgcaatgtgtgctcggccacacaaggttgatggacgtgtggtggaaccaaagagagctgtttctagagaggattctgtaaagcctggtgcccatttaacagtgaagaagatttttgttggtggtattaaagaggatacagaagaatataatctgagagactactttgaaaagtatggcaagattgaaaccatagaagttatggaagataggcagagtgggaaaaagagaggatttgcttttgtaacttttgatgatcatgacacagttgataaaattgttgttcagaaataccacactattaatgggcataattgtgaagtgaaaaaggccctttctaaacaagagatgcagtctgctggatcacagagaggtcgtggaggtggatctggcaactttatgggacgtggaggaaactttggtggcggcggaggaaactttgggcgtggaggaaactttggtggaagaggaggctatggtggtggaggtggtggcagcagaggcagttatggaggtggtgatggtggatataatggatttggaggtgatggtggcaactatggtggtggtcctggttacagtagtagaggaggttatggaggtggtggaccaggatatggaaaccaaggtggtggatatggtggtggaggaggaggatatgatggttacaatgaaggaggaaattttggtggaggtaactatggtggtggtgggaactataatgactttggaaattatagtggacagcaacaatctaattatggacccatgaaggggggcagttttggtggaagaagctcaggcagtccctatggtggtggctatggatctggaggtggaagtggtggatatggtagcagaaggttttaaaataaaacaaacggctacagttcttagcaggagagagagcgaggagttgtcaggaaagctgcaggttactttgagacagtcgtcctaaatgcattagaggaactgtaaaaatctgccacagaaggaacgatgatccatagtcagaaaagttactgcagcttaaacaggaagcccttcttgttcaggactgtcatagccacagtttgcaaaagtgcagctatcgattaatgcaatgtagtgtcaattagatgtacattcctgaggtcttttatctgttgtagctttgtctttttctttttcttttcattacatcaggtatattgccctgtaaattgtggtagtggtaccaggaataaaaaattaaggaatttttaacttttcaatatttgtgtagttcagtttttctacattttagtacagaaactttaacaaaatgcagttttgaaggtgtttccttgtgagttaacaagtaaagaagatcattgttaatcactattttgtatgaattttgctaaagttaactgtaaagaaacacctactgacttgcagtttaaggggaatctattctcccatttccaaaaccatgatgactgggcgctgacatgtggagagaatagatacttgtatgtttgcaaatgtgtgttttagataattaggattgggtaataaaaaatagcatatttgtgaatttaatagcattaagattacattcaaatgaaaaagatctcaaaatttgctgtttggttttgtgcattttctttcaaaatgtaatcatgattttagtgtggtagacttaagtcctaaccatgtttaagaacatctccattccacatttaccttgataacattgaaactgctgccaatagtttggggtatgaagtgtttatactgccctctacttcccaagggcggtagatgaatgccatctccctatttaacagccttttaatatagaaccaccaagtctgctgtgtctgagcagactgtggtgggtacctggtttgtttctgcttttaagatttaaggtctcaaagccccattggtctagtcaactttccttggttacgttccccacacacagcttttcagagcaaaggaataaaaatcactggtttgaacccctgactggctggcatgctttcctgttcatattctagccattttgctggatggtgaagcaaagtatagtaaggtgtcgtctaaaccaagcagcagaagatgtagcacacacagttgctcagtgcaagcacctcacttcccaaatatctcaattcaaattcagaacgtcttgagtccttaaatccccaaagaacacatggttattcttgtatatatatcattctaaaacatgttgggtgtgacaatttggagaacctgtttgaggagctttagatactaaggtggtcatatacatgaaaaaaaaatgtctgctgttgcgccagctagtgcttaacaatttcattcaagtcctaagtatgtgccctgctgttactttctttggcagttgaccgttgaattcagatttttacttggtttttaaagtataagctaaacaagcaataaaaaggggaatggggtgtgctagtatttcaatatgctctcttgttgctctactgtgcctctgtgcattaatatttggatgcatgcaatgctagcatggaactttggtcttcacaaatactgcagtttttccagaaaacactcacaaaccaataaatgtaacagacaacattccatttgttaatgggcatatgtgcataagcagtgtagaaaataggctcatgttagaaactggttacatccttcataactaaaagtgtggttatttgaatggacactgtcaatgttcatagcttaaacctgggtacctggtcaaaatgcttaggaaacattaaaattgagctaaattgt

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