2024-04-29 03:59:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008761911 3135 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus heterogeneous nuclear ribonucleoprotein A3 (Hnrnpa3), transcript variant X1, mRNA. ACCESSION XM_008761911 VERSION XM_008761911.3 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051338.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 21, 2021 this sequence version replaced XM_008761911.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3135 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="3" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..3135 /gene="Hnrnpa3" /gene_synonym="Hnrpa3; mBx" /note="heterogeneous nuclear ribonucleoprotein A3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 143 ESTs, 37 long SRA reads, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 216 samples with support for all annotated introns" /db_xref="GeneID:362152" /db_xref="RGD:727807" CDS 151..1224 /gene="Hnrnpa3" /gene_synonym="Hnrpa3; mBx" /codon_start=1 /product="heterogeneous nuclear ribonucleoprotein A3 isoform X1" /protein_id="XP_008760133.1" /db_xref="GeneID:362152" /db_xref="RGD:727807" /translation="
MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF"
misc_feature 181..423 /gene="Hnrnpa3" /gene_synonym="Hnrpa3; mBx" /note="RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3) and similar proteins; Region: RRM1_hnRNPA3; cd12763" /db_xref="CDD:410156" misc_feature order(190..192,196..198,202..207,271..273,277..279, 283..285,310..318,322..324,391..393,400..402,406..423) /gene="Hnrnpa3" /gene_synonym="Hnrpa3; mBx" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:410156" misc_feature 460..699 /gene="Hnrnpa3" /gene_synonym="Hnrpa3; mBx" /note="RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3) and similar proteins; Region: RRM2_hnRNPA3; cd12582" /db_xref="CDD:409996" misc_feature 1078..>1128 /gene="Hnrnpa3" /gene_synonym="Hnrpa3; mBx" /note="Nuclear factor hnRNPA1; Region: HnRNPA1; pfam11627" /db_xref="CDD:431967" ORIGIN
cccactggtccagtcgcgctccgctttggcgtgaccccgcccccgatgggcgggcggcgcgcggatagaacatcacgtggttactagccccgcctcttcctctcggtcccatattgaactcgagttggaagaggcgagtccggtctcaaaatggagggccacgatccaaaggaaccagagcagctgaggaagctgtttattggtggtctgagctttgaaaccacagatgatagcttaagagaacattttgagaaatggggcacacttacagattgtgtggtaatgagagatcctcaaacaaaacgttccagaggctttggttttgtgacctactcttgtgtcgaagaggtggatgctgcaatgtgtgctcggccacacaaggttgatggacgtgtggtggaaccaaagagagctgtttctagagaggattctgtaaagcctggtgcccatttaacagtgaagaagatttttgttggtggtattaaagaggatacagaagaatataatctgagagactactttgaaaagtatggcaagattgaaaccatagaagttatggaagataggcagagtgggaaaaagagaggatttgcttttgtaacttttgatgatcatgacacagttgataaaattgttgttcagaaataccacactattaatgggcataattgtgaagtgaaaaaggccctttctaaacaagagatgcagtctgctggatcacagagaggtcgtggaggtggatctggcaactttatgggacgtggaggaaactttggtggcggcggaggaaactttgggcgtggaggaaactttggtggaagaggaggctatggtggtggaggtggtggcagcagaggcagttatggaggtggtgatggtggatataatggatttggaggtgatggtggcaactatggtggtggtcctggttacagtagtagaggaggttatggaggtggtggaccaggatatggaaaccaaggtggtggatatggtggtggaggaggaggatatgatggttacaatgaaggaggaaattttggtggaggtaactatggtggtggtgggaactataatgactttggaaattatagtggacagcaacaatctaattatggacccatgaaggggggcagttttggtggaagaagctcaggcagtccctatggtggtggctatggatctggaggtggaagtggtggatatggtagcagaaggttttaaaataaaacaaacggctacagttcttagcaggagagagagcgaggagttgtcaggaaagctgcaggttactttgagacagtcgtcctaaatgcattagaggaactgtaaaaatctgccacagaaggaacgatgatccatagtcagaaaagttactgcagcttaaacaggaagcccttcttgttcaggactgtcatagccacagtttgcaaaagtgcagctatcgattaatgcaatgtagtgtcaattagatgtacattcctgaggtcttttatctgttgtagctttgtctttttctttttcttttcattacatcaggtatattgccctgtaaattgtggtagtggtaccaggaataaaaaattaaggaatttttaacttttcaatatttgtgtagttcagtttttctacattttagtacagaaactttaacaaaatgcagttttgaaggtgtttccttgtgagttaacaagtaaagaagatcattgttaatcactattttgtatgaattttgctaaagttaactgtaaagaaacacctactgacttgcagtttaaggggaatctattctcccatttccaaaaccatgatgactgggcgctgacatgtggagagaatagatacttgtatgtttgcaaatgtgtgttttagataattaggattgggtaataaaaaatagcatatttgtgaatttaatagcattaagattacattcaaatgaaaaagatctcaaaatttgctgtttggttttgtgcattttctttcaaaatgtaatcatgattttagtgtggtagacttaagtcctaaccatgtttaagaacatctccattccacatttaccttgataacattgaaactgctgccaatagtttggggtatgaagtgtttatactgccctctacttcccaagggcggtagatgaatgccatctccctatttaacagccttttaatatagaaccaccaagtctgctgtgtctgagcagactgtggtgggtacctggtttgtttctgcttttaagatttaaggtctcaaagccccattggtctagtcaactttccttggttacgttccccacacacagcttttcagagcaaaggaataaaaatcactggtttgaacccctgactggctggcatgctttcctgttcatattctagccattttgctggatggtgaagcaaagtatagtaaggtgtcgtctaaaccaagcagcagaagatgtagcacacacagttgctcagtgcaagcacctcacttcccaaatatctcaattcaaattcagaacgtcttgagtccttaaatccccaaagaacacatggttattcttgtatatatatcattctaaaacatgttgggtgtgacaatttggagaacctgtttgaggagctttagatactaaggtggtcatatacatgaaaaaaaaatgtctgctgttgcgccagctagtgcttaacaatttcattcaagtcctaagtatgtgccctgctgttactttctttggcagttgaccgttgaattcagatttttacttggtttttaaagtataagctaaacaagcaataaaaaggggaatggggtgtgctagtatttcaatatgctctcttgttgctctactgtgcctctgtgcattaatatttggatgcatgcaatgctagcatggaactttggtcttcacaaatactgcagtttttccagaaaacactcacaaaccaataaatgtaacagacaacattccatttgttaatgggcatatgtgcataagcagtgtagaaaataggctcatgttagaaactggttacatccttcataactaaaagtgtggttatttgaatggacactgtcaatgttcatagcttaaacctgggtacctggtcaaaatgcttaggaaacattaaaattgagctaaattgt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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