2024-05-04 20:44:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008760310 7344 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus dedicator of cytokinesis 8 (Dock8), transcript variant X1, mRNA. ACCESSION XM_008760310 VERSION XM_008760310.3 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051336.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 21, 2021 this sequence version replaced XM_008760310.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7344 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="1" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..7344 /gene="Dock8" /note="dedicator of cytokinesis 8; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 50 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns" /db_xref="GeneID:499337" /db_xref="RGD:1561588" CDS 173..6268 /gene="Dock8" /codon_start=1 /product="dedicator of cytokinesis protein 8 isoform X1" /protein_id="XP_008758532.1" /db_xref="GeneID:499337" /db_xref="RGD:1561588" /translation="
MTHLNSLDAELAQELGDLTDDDLHVAFTPKECRTLQHSLPEEGVELDPHVRDCVQTYIREWLIVNRKNQGSPEFCSFRKTGSRRDFHKTLQKQTFESETLECSEPATQTGPRHRFNVLCDVSGKGPITSCDFDLRSLQPDERLENLLQLSAEDFEKEKEEARKTNRTAELFALYPSVDEEDAVEIRPVPECPKEHLGNRILVKVLTLKFEIEIEPLFASIALYDVKERKKISENFHCDLNSDQFKGFLRAHTPSVDPSSQARSAVFSVTYPSSDIYLVVKIEKVLQQGEIADCAEPYMIIKESDGGKSKEKVEKLKLQAESFCQRLGKYRMPFAWAPISLASFFNVSTLERESTDLEPGAGRNSVGERRSLSQSRRPSERTLSFEENGVGSNFKTTTLATNIFFKQEGDRLSDEDLFKFLADYKRSSSLQRRVKSIPGSLRLEIAPAPDVMNCCLTPEMLPVKPFPENRTRPHKEILEFPIREVYVPHTVYRNLLYVYPQRLNFANKLASARNITIKIQFMCGEDPSNAMPVIFGKSSGPEFLQEVYTAITYHNKSPDFYEEVKIKLPAKLTVNHHLLFTFYHISCQQKQGASGESLLGYSWLPILLNERLQTGSYCLPVALEKLPPNYSIHSAEKVPLQNPPIKWAEGHKGVFNIEVQAVSSVHTQDNHLEKFFTLCHSLESQVTFPIRVLDQKITENTLEHELKLSIICLNSSRLEPLVLFLHLVLDKLFQLSVQPMVIAGQTANFSQFAFESVVAIANSLHNSKDLRKDQHGRNCLLASYVHYVFRLPELHRDAPKSGGPTAVVPDPRYHTYGRTSAAAVSSKLMQARVMSSSNPDLAGTHCAADEEVKNIMSSKIADRNCSRMSYYCSGNSDVPGSTAAPRPVSKKHFHEELALQMVVSTGLVRETVFKYAWFFFELLVKSMAQYVHNLDKRDSFRRTRFSDRFKDDITTIVNVVTSEIAALLVKPQKESEQAEKINISLAFFLYDLLSIMDRGFVFNLIKHYCTQLSAKLNTLPTLISMRLEFLRILCSHEHYLNLNLLFMNPDTAPASPCPSISSQNSSSCSSFQDQKIASMFDLTPEYRQQHFLTGLLFTELAVALDAEGDGISRVQRKAVSAIHSLLSSHDLDPRCLKPEVKVKIAALYLPLVGIILDALPQLYDFTDARSGRSRASGSYEEQDVANGINQNVALAIAGNHFNLKTSGAMLSSLPYKQYNMLNADTTRHLMVCFLWIMKNADQSLIRKWIADLPSMQLNRILDLLFICVSCFEYKGKQSSDKVSNQVLQKSRDVKAKLEEALLRGEGARGEMMRRRIPGTDRFPGLNENLRWRKEQTQWRQANEKLDKTKAELDQEALISGNLATEANLIILDMQENIIQASSSLDCKDSLLGGVLRVLVNSLSCDQSTTYLTHCFATLRALIAKFGDLLFEEEMEQCADLCQRVLHHCSSSMDVTRSQACATLYLLMRFSFGATSNFARVKMQVTMALASLVGKAPDFNEEHLRKSLRTILAYSEEDTAMRATLFPTQVEELLCNLNSILYDTVKMREFQEDPEMLMDLMYRIAKSYQASPDLRLTWLQNMAEKHTKRKCFTEAAMCLVHAAALVAEYLSMLEDHSYLPVGSVSFQNISSNVLEESAVSDDTLSPDEDGVCSGRYFTESGLVGLLEQAAELFSTGGLYETVNEVYKLVIPILEAHRDFRKLTSTHDKLQKAFDNIINKDHKRMFGTYFRVGFYGSKFGDLDEQEFVYKEPAITKLPEISHRLEGFYGQCFGAEFVEVIKDSTPVDKTKLDPNKAYIQITFVEPYFDEYEMKDRVTYFEKNFNLRRFMYTTPFTLEGRPRGELHEQHRRNTVLTTMHAFPYIKTRIRVSQKEEFVLTPIEVAIEDMKKKTLQLAVATHQEPPDAKMLQMVLQGSVGATVNQGPLEVAQVFLAEIPADPKLYRHHNKLRLCFKEFIMRCGEAVEKNRRLITAEQREYQQELKKNYNRLKDSLRPMIERKIPELYKPIFRVDSQKRDSFHRSSFRKCETQLSQGS"
misc_feature 173..466 /gene="Dock8" /note="Domain of unknown function (DUF3398); Region: DUF3398; pfam11878" /db_xref="CDD:432155" misc_feature 1643..2185 /gene="Dock8" /note="C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins; Region: C2_Dock-C; cd08696" /db_xref="CDD:176078" misc_feature 4874..6139 /gene="Dock8" /note="Dock Homology Region 2, a GEF domain, of Class C Dedicator of Cytokinesis 8; Region: DHR2_DOCK8; cd11701" /db_xref="CDD:212574" misc_feature order(5225..5227,5255..5257,5261..5266,5270..5275, 5282..5287,5291..5296,5303..5308) /gene="Dock8" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:212574" misc_feature order(5345..5347,5351..5353,5420..5422,5429..5440, 5444..5449,5504..5512,5561..5569,5651..5662,5690..5695, 5702..5704,5708..5710,5819..5824,5831..5833,5879..5884, 5888..5893,5900..5908,5915..5923,5930..5935,5942..5944, 6026..6028,6092..6094,6101..6103) /gene="Dock8" /note="Rac/Cdc42 binding site [polypeptide binding]; other site" /db_xref="CDD:212574" misc_feature 5915..5932 /gene="Dock8" /note="nucleotide sensor; other site" /db_xref="CDD:212574" ORIGIN
ctcccgcccaacctcggacagtaccatcggcacagcctcagtacctctggtttcccttctcttcagctaccgccattttgtcgcctgtgacagtttacccaccgcgttaactgtgtatcctcagcctcagctgtatgagcccgttgagcctgtggactttgaaggacttgtgatgacgcacttaaacagcttggatgcagagctggcccaggagctgggggacctcaccgatgacgacctgcatgtggccttcacacccaaggagtgtaggactttgcagcactctctgccagaggaaggagttgaactggatcctcacgtcagggactgtgttcagacctatattcgagagtggctgattgtgaaccggaaaaaccaaggaagtccagagttttgcagcttcagaaagactggatctcgcagagattttcacaagacgcttcagaaacagacgtttgagtcagaaaccttggagtgcagtgaaccggccactcagacgggaccccgccatcgcttcaacgtgctgtgtgatgtgtctgggaagggccccatcacttcttgtgacttcgacctccgcagcctgcagcctgacgagcggctggaaaacctgcttcagctgagtgctgaggactttgagaaggagaaagaggaggcccgaaagaccaatcggacggctgagctcttcgccctctatccatccgtagatgaggaggatgctgtggaaatccgtccagtaccagaatgtcctaaggaacatctgggcaacagaatattggtgaaggtgctgaccctgaagtttgagattgaaattgaacctctgtttgccagtattgccctctatgatgttaaagaaaggaaaaagatctcagaaaacttccactgtgacctgaactccgaccagttcaaagggtttctgcgagctcacacaccctcggttgacccgtcgagtcaggcaaggtctgcagtgttctcggtcacctacccatcttcagacatctacctggttgtcaagattgaaaaggtccttcagcaaggagagatcgcagactgtgcagaaccctacatgatcatcaaagaaagcgatggtggaaagagtaaagaaaaggttgaaaaactaaaactccaagctgaatccttctgccaacgtttggggaaataccggatgcccttcgcctgggcccccatcagcttagcaagcttcttcaacgtctccacccttgaaagggagagcacagacttggagcctggggctgggagaaactctgtgggggagaggaggagtttgtcccagtccaggaggccttctgagagaaccctctcctttgaggaaaatggagttggatccaacttcaaaaccaccaccttggccactaacatcttcttcaagcaggagggagatcgccttagtgatgaagacttgttcaagtttttagctgactacaagagatcttcgtccctacagcgaagagtgaaatccatcccaggctcacttaggctggagatagccccagctcctgacgtgatgaactgctgcctgacacccgagatgctgccggtcaaacccttccctgaaaatcggacgcgtccccacaaggagattttggaatttccaatccgggaagtgtatgttccccacaccgtgtacagaaaccttctgtacgtatacccacagagactgaactttgctaacaagctagcatccgcccggaacattacaataaagattcagtttatgtgtggagaagaccccagcaatgctatgcctgtcatctttgggaagtccagtgggcctgaatttctgcaggaagtgtacacagctattacataccataataagtctcccgacttttatgaagaagtaaagattaagcttccggccaagctcacagtgaatcaccacctcctcttcaccttctaccacatcagctgtcagcagaagcaaggcgcctctggagaaagccttctgggatactcgtggctgccgattctcctgaacgaacgtcttcaaaccggatcctactgtctaccagttgccttggaaaaactaccacctaactactccatacattctgctgagaaagtccctttacagaatcctcccattaagtgggccgagggccataagggggtatttaatattgaagtgcaagctgtttcctccgttcacacccaggataaccacctggagaagttcttcaccctttgccactccctggagagccaggtgaccttccctatccgcgtgctggaccagaagatcacggagaacacgctggagcatgagcttaagctcagcatcatctgcctcaactcctcccgcctggagcccctcgtgctcttcctccacctggtgctggataagctcttccagctctctgtgcagcccatggtcatcgctggccaaacagcaaacttctcccagtttgccttcgaatctgtggtggccattgccaatagccttcacaacagcaaggacctgaggaaggaccagcacgggaggaactgcctgctggcctcctatgtgcactacgtgttccggctgcccgagctgcacagggatgcacccaagtcaggtggccccaccgccgtagtccctgacccccgataccacacatatggacgcacgtctgccgctgcagtgagttcaaagctgatgcaggcccgtgtgatgagcagcagtaacccagacctggctgggacacactgtgcagcagatgaggaggttaagaacatcatgtcttccaagattgctgatcgcaactgcagccggatgtcttactattgctctggcaacagtgacgttccaggttcaactgcagccccaaggccagtcagcaaaaagcatttccatgaggagcttgccctgcagatggtggtcagcactggactagtgagagaaaccgtcttcaagtacgcctggttcttctttgagcttctggtgaaaagcatggcacagtacgtccataacctggataaacgggacagttttcggaggactcgtttttccgaccgcttcaaggatgacataactaccattgttaatgtggtcacctcggagatagcagcccttctagtgaaacctcagaaggaaagtgagcaggccgagaagatcaacatcagcctggccttcttcctgtatgacctcctctcaatcatggacagaggcttcgtgttcaacctcatcaagcattactgcactcagctatcagccaagcttaacacccttccaaccctcatttccatgcggctggagttcctgagaatcctctgcagccacgagcactacctcaacttgaacctgctcttcatgaatcctgacaccgcaccagcctctccctgtccctccatatcctcccagaactcaagctcctgctccagtttccaggaccaaaagattgccagcatgttcgatctgaccccagagtaccgccagcagcacttcctcacagggctcctcttcacagaactggccgttgccctggatgctgaaggggacggaattagcagagtacagagaaaagccgtgagtgccatccacagccttctgagttctcacgacctggatccacggtgtctcaaaccagaagtgaaagtcaaaatcgctgccctttacctgccgttggtcggcatcattctggatgcgctgccacagctctatgactttacagatgctcgcagtggaaggagccgtgccagtggctcatatgaagaacaagatgtggccaatggaatcaaccagaatgtggccctggccatagcagggaatcattttaatttgaagaccagcggagcaatgctgtcttccttgccctataagcagtacaacatgctgaacgcggacactacccgccacctcatggtctgctttctgtggatcatgaaaaacgcggatcagagcctcatcaggaagtggatcgccgacctgccttccatgcagctcaacaggattctagacctgctgttcatctgtgtctcctgctttgaatacaagggaaagcagagttctgacaaagtcagtaaccaggtcctgcagaagtcaagagatgtcaaggccaagttggaagaagccctgctccgtggggaaggagcccggggggagatgatgcgacgtcggattccaggcactgaccggtttccaggcctaaatgagaatctgaggtggaggaaggagcagacacagtggcggcaagctaacgagaagctggacaaaacaaaggcagagttagatcaagaagccttgatcagtggcaacctggctacagaggctaatttgatcatactggacatgcaggaaaacatcatccaggcaagctcctccctggactgtaaagacagcctgctgggaggtgtcctccgggtcctggtgaattctctgagctgtgatcagagcaccacctacctgactcactgttttgcaactctccgagccctcatcgccaagtttggagacctgctgttcgaggaggaaatggagcagtgtgctgacctgtgtcagcgggtgctccatcactgcagcagtagcatggatgtcacccggagccaagcctgcgccaccctctatctactcatgcggttcagcttcggagccaccagtaactttgcaagagtaaagatgcaggtaaccatggcactggcatccttggtaggcaaagcaccagacttcaatgaggagcacctgagaaagtccttaaggaccattctggcctattcagaagaggacacggccatgcgggcaactctttttcccacgcaggtggaggagcttctctgcaatctcaacagcattttatacgacacagtgaagatgagggaattccaggaggaccctgagatgctcatggacctcatgtacagaattgccaagagctaccaggcatcccctgacctgcggctgacctggctccagaacatggcagagaaacacactaagaggaagtgcttcacagaggccgccatgtgcctggtgcatgcagcagccttggtggcagagtacctgagcatgctggaggaccacagttacctgcctgtgggcagcgtcagctttcagaatatttcttccaatgtgcttgaggaatctgcagtctccgatgacaccttgtcacctgatgaggacggtgtatgctctggtcgctacttcactgagagtggcctggtgggcctcctggagcaggctgcagagctcttcagcacgggaggcttgtacgagacagttaatgaggtctacaagctggtcattcccatcctggaagcacatagagatttccggaagctgacctctactcacgacaagctgcagaaggcctttgacaacatcatcaacaaggaccataagaggatgtttggaacttacttccgagttggtttctacggatccaaatttggggatttggatgagcaggaatttgtgtacaaggaacctgcaattacaaagctccccgagatctcacatagactagagggattttatggccagtgttttggtgccgagtttgtggaagtgataaaggactctactcccgtggataaaaccaagttggatcctaacaaggcctacatacagatcacttttgtggagccttactttgatgagtatgagatgaaagacagggtgacctacttcgagaagaatttcaaccttcggaggttcatgtacaccacccccttcaccctggaggggaggccccggggagagctgcacgagcagcatcgcaggaacacggtgctcaccaccatgcatgccttcccctacatcaagaccaggatccgagtcagccagaaagaggagttcgtcttgactccgattgaagttgccattgaagacatgaagaagaagaccttgcagttagcggtggccactcaccaggagccccctgacgcgaagatgctccagatggtactgcaaggctctgtgggagccaccgtgaatcagggcccactggaggtggcccaagtgttcttggctgaaattccggctgacccaaaactctaccggcatcacaacaagctgaggttatgcttcaaggagttcataatgcgatgcggtgaggccgtagagaagaacaggagactcattaccgcagagcagcgggagtaccagcaggaactcaagaagaactacaacaggctgaaggacagcctcaggcccatgattgagcggaaaatcccagagctctacaagcccatattcagggttgacagtcaaaagagggactctttccacagatctagtttcaggaaatgtgaaacccagttgtcacagggcagctgaaaaaagccacctttgcctgtagtgactggggccccactacctggaaggactcactggtacgtccccagcagccacccaagactgactgtccagccagtgctctggaaacttgtatttattaaaatatttttcatactgctgtacaaacaaggcctaagctgtttctgccgagtggccggtcatggtcctcccatgaagtgatgtcttctgacctatatctgaattcctaaaataaactcaaaccgtggacggaagagtggaccactgtcctgcagcctactccaagtgagcttcactcatcccttcagtgagaagaaaagataaactccagagaagtgaaacgttttccaaatcatctgtgagaggaagtcctacaggaagcctggtctcatgctggctgggaatctgggaatagatggatcgatcactctacaagctgctttttgcccctcctgcattgctggactgagtgccatctagttatctctgcgttgttgcttctgttaagctgagtgagcccacctttatccaggggacagttgtacaggacagtacagatcacccggccacacggcgctgacagcgcattccccagagcggaagcagttctcccagaacgttttgctggtttcctatacgcttgctctcactgtctcctttctcttctctgggataaggtgatttatttttttttatttttttttataggtgatttttatacaagggtaatactctgccttcgctccagaacattcgtcctctgtgtgctacaaaatatatgcttttgattctttttacagtgtattttaggaaaaagaaaaacaaagctatggtttgagaattaaattatatattttttcatacaactcacgaccttaacgaatactaaagatggaatacagacggcaagcaagtgggaagctggcacccacctttagtcctagctctcggaggccagcctggtcgacagagcgagctccaggacagccagatggacacagtgagaccaagtctcataaataaataaataaataaataaataaataaataaataaatcaatcaatcaatcaatcaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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