LOCUS       XM_006254827            4269 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus thioredoxin-like 1 (Txnl1), transcript
            variant X1, mRNA.
ACCESSION   XM_006254827
VERSION     XM_006254827.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006254827.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4269
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4269
                     /gene="Txnl1"
                     /gene_synonym="Txnl"
                     /note="thioredoxin-like 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 77
                     ESTs, 11 long SRA reads, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 41 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:140922"
                     /db_xref="RGD:621717"
     CDS             236..1114
                     /gene="Txnl1"
                     /gene_synonym="Txnl"
                     /codon_start=1
                     /product="thioredoxin-like protein 1 isoform X1"
                     /protein_id="XP_006254889.1"
                     /db_xref="GeneID:140922"
                     /db_xref="RGD:621717"
                     /translation="

MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIPKGYMDLMPFINKAGCECLNESDEHGFDNCLRKDLSFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTLFVQSNQGEEETTRISYFTFIGTPVQATNMNDFKRRIHIGKLRVVSL"

     misc_feature    269..547
                     /gene="Txnl1"
                     /gene_synonym="Txnl"
                     /note="TRX family; composed of two groups: Group I, which
                     includes proteins that exclusively encode a TRX domain;
                     and Group II, which are composed of fusion proteins of TRX
                     and additional domains. Group I TRX is a small ancient
                     protein that alter the redox...; Region: TRX_family;
                     cd02947"
                     /db_xref="CDD:239245"
     misc_feature    order(335..337,344..346)
                     /gene="Txnl1"
                     /gene_synonym="Txnl"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:239245"
     misc_feature    611..1039
                     /gene="Txnl1"
                     /gene_synonym="Txnl"
                     /note="PITH domain; Region: PITH; pfam06201"
                     /db_xref="CDD:428821"
ORIGIN      

gctgggtgttgcgcgccttgcccctctagctcccctcccagcccgcgtctcctccccctccgctcgcctgctccctggcgtgactcggcactcgcagcaccgggaggacacgtcgtggtcgccgttcccgcccaggccccggcctcctgcagcctctctccggcctctctcgggctttcgtcttaagttttgaggccggaggcgtcgtggccgtcctgccgggctctctgtaaggatggtgggagtgaagccggtcgggagcgatccagatttccagccggagctgagtggggcgggctccagacttgctgtggtcaagttcaccatgagagggtgtggaccatgtttgaggatcgccccggcattcagttctatgagtaataagtacccacaggcagtcttcttggaagtagatgtgcatcagtgccagggaacagctgccaccaacaatatatcagcaacacctacatttttgttttttcgaaacaaagtgagaattgatcagtatcaaggagcagatgctgtgggactggaagaaaaaatcaagcagcatttagaaaatgaccctggaagcaatgaggacacagacattcccaagggctatatggatttaatgccttttattaacaaagctggctgcgaatgtctcaatgaaagtgatgagcacggctttgacaactgcttacgaaaagacctgtccttcttggagtctgactgcgacgagcagctgcttattactgtggcattcaatcaaccagttaaactttattccatgaagtttcaaggaccagataatggtcagggtcctaaatatgtaaaaatttttatcaacctaccccgatctatggactttgaggaggcagaaaggagtgagccaacccaagctctggaactgacagaagatgacattaaagaagatggcattgttcctcttcgttatgttaaatttcagaatgtgaacagtgtaactttgtttgttcagtctaatcaaggagaagaagaaacaacaagaatttcctattttactttcattggtactcccgtccaggcaacaaatatgaatgacttcaaacgaagaatacatattggcaagttgagagttgtcagcctgtgaaacagtagttggcaaaaagggggaaagccattagggtacaaaagacactggaagactactgcagtcagatttgcagctcctggataattgcttgattctcttcggaaactgttaatcttttatttgttgccagtaccaataaatcattgcttttgttcagatggtaatactagtgtttctattgtaatcttgatacatgcagttgtaaataaaagtcattactttgccaagcttaaatttttgtcattctgtataaatgcattctctctctttttatttgaacataggctaagcttttgttttagaagagttgttgactaaaagctagtctgtctctaaaggagcggaatgttgcaggacttgggagcactgtctatacatgtggagtgttttgatatggacttgagacatccgtatatgtggaatgttttgatgcatggatttgggatggttaatcaagttcaagaccatactgacttattctatcaaaagatatttagggatctaggctttataaatttactcaattctaagcatctattactcctgtcactggcagttaacaggtttacaaatgttttgtttctaagttatcttcaccattgatatccttgtgtacctgccgcccagatggtgggattgtaagcatataccactctcgtgccaagattttaactctctgtataaacctaaaagttagagttagctattccctttaataaggcaggcattaatactaaattcagaaaatttggaaaaatataatacaacgaatttatcgaaatttagaagtggaatctaatctaatttattatcttaagttcaccaaaacattcactctaaatatatagatagataaagcttaaaatgagttgtctcaactgattgaaaggtctttcacaatagactggctaagacaaatatttgttcttacatgcttttttaacacttaatattggcaaatttaatgtttaaatactttattttttatgtgcatgtgtgttttgcctccgtgtgtgtattcatgtgggtgtggtgcctaacagaggccagaagagcctcagaaaccctggaaaaggggtgggagctgcttgggaactgccgtgtgggtggtaggaacaaaccccggcctctacaagactgctgctccagcccacaaggttgtcttgtacttgattactttaaaagcatatgtaagactataatttgtaattcagttacacatttgaggacattcttatctagaaatagtacagagattcgccctttggatactaatgtatttatacataattatgaaaaaactatcgtcgttgttgaagtagtgttgaagtactccttttctgaaacttgtgtccttacgtgatgttcagatcatttgtatgtgagtacagtaactggtctgtgttgcggctgtattttatgtatttcacagagtttgttgactcggaacaaatggaagacaacaaaataaaagtttatagtacctgtaaaccatcttgaagttaatcacacctgaaatggagaatacgattaacaagaaaagttgtagtttatacttatcctttttggggggaatcataaaagtgcctcatctcaggtgtaaatggtctcatcctattcgactacttgaaaaaccaagtaaaagtggtttcacatttgcaaaggatcagacatgagatttcctgttgttcatatgattcctgttacttttttgcaacttacagacattccatcattcaagttgtaaatagtgaagaatgctagtaggaaacttacatgtgtcacaaacaaatacgcataattgagatataaaaccaagctaaaatgctgttttctgttaagctagttaatataaatatatatttaaatataaataagtatatttacatgtaagtttttctcaaaagaacatgaggaatgtgtagccttagctcttttatcattagccatccattaatgttttctagaaaactaatatttattaccaaaaatctgcatgcatcgtttttcaagtcaggctgcctagttgagacatacaatgaaatgctctgtcagcagaaacaaagtattgccaaagtattgcttttcagagaaagcctaacaataagaccagcccttgttactccactcaagagttcccgttggtctttatactttgactatctgctgtcaagtaccaaataggaccctctcggcatacgaatgtattggatggagttagtcacctagccttctgccaaccgtgtttctttaaatgattaaagatgtgtaagattttttttgtactgttaatagtttttgctattagtgtatatttaataccagcatttgttttatggatgttgttagtatcagattgagagcattgacatcacaatgtcagcaacgagatacagtctgtacatgacaaagagttacatccttgtcagatcttaacgatatgaacaagacctgtacaatgacaccgtcagctgacttgccaaaatggatgtcgtacaaggccagatctctacatgaaaagctactaagaaccagtcttacccggggaaaggtctcttggtaagttatccaatcccaagtggccagccctaaatacaaacgagcaatcccaaatgtacttgcaggttatattcacgtacatgcatatgtggacatgtctgctattgctgtgaatacccctgaccaaggcgtgcttcagaagaactcattgaccctgactcagagggtgagtctgagcgttgtgttggggagcatggcaggaggcaagcgggcatggtactgggagggtagctgaattcctgcgtacagtctgatccagaactatgaggcaaggagagccaactgggaatggtgtgggcctttgaaatcacagcagaaaaaggagggattatgttacaattacatttaaaaatataaggtgactgatacgtagcttatttgaatcaataccaatacccttggtttctttttttattacaccaaagacaatttttgtctacaatttcttaagtgttgtttatatatgaaaatttcaatgtctcatttgtctactcacctcacttgattatcatgtttgagaaatattgatacaggagaaattggaatttactcctaaagtttttagtctcattaataaagtgcattttaatata

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